Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005492

Physical Location & Seq

Genomic Coordinates Forward (+)

3597216 .. 3598687

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCGAACCCAGGGCAATCAAAGGGATGGATAAAGAAATGGACGTCTATGGCTTCATCGGTTTACTTCGTCTTGATCTTATTCCAGATCCCTCTCTTCAGAGTTCCATGTAGATCTGGTATGTGTTCATCGCCAATCCATGTGACATCGTCTCAGTTGATTTCTAGTGAGATCTTTCCTGTTCCGATGATTAAGGCTCTCTTATACCCTGGTGCTGTAGTCAATGGCCTTGCCATCAACATGACATTTCCAAAGTGGGAAAATGTGTTAGATATCTACAATCTCACCAATGTGAAAGAAGCTTCTGCAGTGACCGATCTTCAACGCCTAGAGGTTCTTGCAGGGAGCTACTTTTCTGTAGCTGGGGCGTTTGTGGGTTTGCTAAAGCCTGGAAGGATGAGCATGTTTGGGTCATTGCTACTAGTATGGGGTCTTGTTAAAGAAGGGATCTTAGGGAAGCCAGTAAATACTGACCCAGCCAAAACTGTTTATGTGTACCCAACTATGGTGCTTGCGATGATCTGCGCTTTCTCTATGATAAAGTATGACTTGAGGAAAGCCACGAGGGCAGCTCCAGCTCGTCCCATTGCTAAACCTCTAATGAGCTCTTCAAAATCTAAGCTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

22.85

Weight (kDa)

9.91

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11280
fragaria_vesca	FvH4_2g29460 FvH4_6g30260 FvH4_6g30260 FvH4_6g30260
malus_domestica	MD15G1123100.v1.1 MD17G1206100.v1.1
prunus_persica	Prupe.1G478100_v2.0.a1
pyrus_communis	pycom15g11060 pycom17g20930
rosa_chinensis	RchiOBHm_Chr2g0136501 RchiOBHm_Chr6g0298251
rosa_laevigata	RLG00000011520 RLG00000019537
rosa_multiflora	Rmu_sc0003420.1_g000011
rosa_roxburghii	Rroxscaffold_2G00108220 Rroxscaffold_7G00169810
rosa_rugosa	Rorug02G0331400 Rorug06G0279800
rosa_samantha	Rh2AG382200 Rh2BG388900 Rh2CG368600 Rh2DG405600 Rh6AG390300 Rh6BG398700 Rh6CG404600 Rh6DG391300
rosa_wichuraiana	Rw2G031240 Rw6G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AclWI	GGATC	2 cut(s)	82, 455
AcuI	CTGAAG	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	2 cut(s)	323, 612
AhlI	ACTAGT	1 cut(s)	421
AjnI	CCWGG	3 cut(s)	10, 208, 388
AleI	CACNNNNGTG	1 cut(s)	290
AluBI	AGCT	7 cut(s)	302, 348, 362, 572, 578, 606, 622
AluI	AGCT	7 cut(s)	302, 348, 362, 572, 578, 606, 622
Alw21I	GWGCWC	1 cut(s)	608
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	82, 455
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	527
AsuHPI	GGTGA	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	608
BauI	CACGAG	1 cut(s)	562
Bbv12I	GWGCWC	1 cut(s)	608
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	2 cut(s)	21, 242
BciT130I	CCWGG	3 cut(s)	12, 210, 390
BcoDI	GTCTC	1 cut(s)	156
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	3 cut(s)	165, 329, 422
BfmI	CTRYAG	3 cut(s)	216, 306, 357
BglI	GCCNNNNNGGC	1 cut(s)	566
BglII	AGATCT	2 cut(s)	113, 171
BisI	GCNGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	571
Bme1390I	CCNGG	3 cut(s)	12, 210, 390
BmrFI	CCNGG	3 cut(s)	12, 210, 390
BplI	GAGNNNNNCTC	2 cut(s)	556, 588
BpmI	CTGGAG	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	571
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	3 cut(s)	10, 11, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	2 cut(s)	413, 585
BseBI	CCWGG	3 cut(s)	12, 210, 390
BseDI	CCNNGG	3 cut(s)	10, 11, 208
BseGI	GGATG	2 cut(s)	32, 402
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMI	GCAATG	2 cut(s)	413, 585
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	581
BseYI	CCCAGC	2 cut(s)	362, 475
BshFI	GGCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	608
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	1 cut(s)	156
BsmBI	CGTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	567
BsnI	GGCC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	608
Bsp143I	GATC	7 cut(s)	75, 87, 113, 171, 316, 447, 519
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	310
BspPI	GGATC	2 cut(s)	82, 455
BspQI	GCTCTTC	1 cut(s)	613
BsrDI	GCAATG	2 cut(s)	413, 585
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	3 cut(s)	10, 11, 208
BssMI	GATC	7 cut(s)	75, 87, 113, 171, 316, 447, 519
BssNI	GRCGYC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	562
Bst2BI	CACGAG	1 cut(s)	562
Bst2UI	CCWGG	3 cut(s)	12, 210, 390
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	2 cut(s)	101, 613
BstACI	GRCGYC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	153, 451, 618
BstF5I	GGATG	2 cut(s)	32, 402
BstHHI	GCGC	1 cut(s)	527
BstKTI	GATC	7 cut(s)	78, 90, 116, 174, 319, 450, 522
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	7 cut(s)	75, 87, 113, 171, 316, 447, 519
BstMWI	GCNNNNNNNGC	2 cut(s)	566, 575
BstNI	CCWGG	3 cut(s)	12, 210, 390
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	3 cut(s)	10, 208, 388
BstSFI	CTRYAG	3 cut(s)	216, 306, 357
BstV1I	GCAGC	1 cut(s)	581
BstX2I	RGATCY	4 cut(s)	87, 113, 171, 447
BstYI	RGATCY	4 cut(s)	87, 113, 171, 447
BsuRI	GGCC	1 cut(s)	228
BtgZI	GCGATG	2 cut(s)	114, 530
BtsCI	GGATG	2 cut(s)	32, 402
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	513
CfoI	GCGC	1 cut(s)	527
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	4 cut(s)	108, 140, 241, 403
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	3 cut(s)	153, 451, 618
DpnI	GATC	7 cut(s)	77, 89, 115, 173, 318, 449, 521
DpnII	GATC	7 cut(s)	75, 87, 113, 171, 316, 447, 519
Eam1104I	CTCTTC	2 cut(s)	101, 613
EarI	CTCTTC	2 cut(s)	101, 613
Ecl136II	GAGCTC	1 cut(s)	606
Eco24I	GRGCYC	1 cut(s)	608
Eco32I	GATATC	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	606
Eco57I	CTGAAG	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	606
EcoRII	CCWGG	3 cut(s)	10, 208, 388
EcoRV	GATATC	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	608
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	4 cut(s)	111, 143, 244, 406
FalI	AAGNNNNNCTT	4 cut(s)	185, 217, 533, 565
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	4 cut(s)	107, 139, 240, 402
Fnu4HI	GCNGC	1 cut(s)	570
FokI	GGATG	2 cut(s)	39, 409
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	1 cut(s)	570
FspBI	CTAG	3 cut(s)	165, 329, 422
GlaI	GCGC	1 cut(s)	526
GluI	GCNGC	1 cut(s)	570
GsaI	CCCAGC	2 cut(s)	366, 479
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	228
HhaI	GCGC	1 cut(s)	527
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	4 cut(s)	111, 143, 244, 406
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HindIII	AAGCTT	1 cut(s)	300
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	2 cut(s)	64, 496
Hpy188I	TCNGA	2 cut(s)	101, 186
Hpy188III	TCNNGA	2 cut(s)	73, 85
Hpy8I	GTNNAC	2 cut(s)	64, 496
HpyAV	CCTTC	2 cut(s)	387, 437
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	308, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	566, 575
HpyF3I	CTNAG	3 cut(s)	153, 451, 618
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	4 cut(s)	111, 143, 244, 406
HspAI	GCGC	1 cut(s)	525
Kzo9I	GATC	7 cut(s)	75, 87, 113, 171, 316, 447, 519
LguI	GCTCTTC	1 cut(s)	613
LmnI	GCTCC	2 cut(s)	345, 577
Lsp1109I	GCAGC	1 cut(s)	581
MaeI	CTAG	3 cut(s)	165, 329, 422
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	2 cut(s)	142, 310
MalI	GATC	7 cut(s)	77, 89, 115, 173, 318, 449, 521
MboI	GATC	7 cut(s)	75, 87, 113, 171, 316, 447, 519
MboII	GAAGA	3 cut(s)	88, 311, 600
MflI	RGATCY	4 cut(s)	87, 113, 171, 447
MhlI	GDGCHC	1 cut(s)	608
MnlI	CCTC	5 cut(s)	102, 325, 546, 558, 606
MseI	TTAA	2 cut(s)	192, 438
MslI	CAYNNNNRTG	2 cut(s)	239, 290
MspR9I	CCNGG	3 cut(s)	12, 210, 390
MvaI	CCWGG	3 cut(s)	12, 210, 390
MwoI	GCNNNNNNNGC	2 cut(s)	566, 575
NdeII	GATC	7 cut(s)	75, 87, 113, 171, 316, 447, 519
NlaIII	CATG	4 cut(s)	111, 143, 244, 406
NmuCI	GTSAC	2 cut(s)	142, 310
NspI	RCATGY	1 cut(s)	406
OliI	CACNNNNGTG	1 cut(s)	290
PasI	CCCWGGG	1 cut(s)	11
PciSI	GCTCTTC	1 cut(s)	613
PflFI	GACNNNGTC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	571
Psp124BI	GAGCTC	1 cut(s)	608
Psp6I	CCWGG	3 cut(s)	10, 208, 388
PspFI	CCCAGC	2 cut(s)	362, 475
PspGI	CCWGG	3 cut(s)	10, 208, 388
PstI	CTGCAG	1 cut(s)	310
PsuI	RGATCY	4 cut(s)	87, 113, 171, 447
PsyI	GACNNNGTC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
RseI	CAYNNNNRTG	2 cut(s)	239, 290
SacI	GAGCTC	1 cut(s)	608
SapI	GCTCTTC	1 cut(s)	613
SaqAI	TTAA	2 cut(s)	192, 438
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	7 cut(s)	75, 87, 113, 171, 316, 447, 519
ScrFI	CCNGG	3 cut(s)	12, 210, 390
SduI	GDGCHC	1 cut(s)	608
SfcI	CTRYAG	3 cut(s)	216, 306, 357
SmiMI	CAYNNNNRTG	2 cut(s)	239, 290
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
SpeI	ACTAGT	1 cut(s)	421
SspMI	CTAG	3 cut(s)	165, 329, 422
SstI	GAGCTC	1 cut(s)	608
StyD4I	CCNGG	3 cut(s)	10, 208, 388
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	1 cut(s)	47
TaqII	GACCGA	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	192, 438
Tru9I	TTAA	2 cut(s)	192, 438
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	2 cut(s)	142, 310
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	2 cut(s)	142, 310
TspDTI	ATGAA	2 cut(s)	45, 117
TspRI	CASTG	1 cut(s)	315
Tth111I	GACNNNGTC	1 cut(s)	148
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	3 cut(s)	165, 329, 422
ZraI	GACGTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.