Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005492

Physical Location & Seq

Genomic Coordinates Reverse (-)

10247567 .. 10249569

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011520

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAACTGCTTCTTCATCGTCGTCGTCCAAAGGATGGATGGGCAATATCCAAACGAAGGCTGCTCGCATCTTTTTCATTCTAATCATTTTTCAGATCCCACTCTTCAGAGTTCCATGCAGAGCTGGTATGTGTACCACACCATTGCATTTCACATCTTCCCAGCTGATTACAAGTGAGATCTTTCCTGTTCCTGTAGTAAAGGCTCTTCTCTACCCTGGAGCTCTTGCAAATGGCCTCGTAAGGAACATGACTGCTCCAAGCTGGAATAACTTGTTAGAAATCTATAACTTGACCAATGCAAAGGAAGCCAATCCAGTTACTGATCTCCAGCGCTTAGAGGTTCTAACAGGGAGCTACTTCTCTGTGGCTGGAGCCCTTGTGGGTGTTCTGAAATCAGGGAGGATGAGCATGTTTGGGACACTTCTATTAATTTGGGGCCTCATCAAAGAAGGGATCTTAGGAAAGCCTGTGAACACAGATCCTACTAAAGCTGTCTATGTCTACCCAACTATGTTGCTTGCCTTGATCGCTGCCTTTTCATCTGTAAAGTATAATGCGAAGAAGATTGTTAGACCTGCACCTGCTAGGCCTATTGCAAAGCCTCTTCAGAGGTCTTCAAAATCTAAGCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.02

Weight (kDa)

10.29

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11280
fragaria_vesca	FvH4_2g29460 FvH4_6g30260 FvH4_6g30260 FvH4_6g30260
malus_domestica	MD15G1123100.v1.1 MD17G1206100.v1.1
prunus_persica	Prupe.1G478100_v2.0.a1
pyrus_communis	pycom15g11060 pycom17g20930
rosa_chinensis	RchiOBHm_Chr2g0136501 RchiOBHm_Chr6g0298251
rosa_laevigata	RLG00000011520 RLG00000019537
rosa_multiflora	Rmu_sc0003420.1_g000011
rosa_roxburghii	Rroxscaffold_2G00108220 Rroxscaffold_7G00169810
rosa_rugosa	Rorug02G0331400 Rorug06G0279800
rosa_samantha	Rh2AG382200 Rh2BG388900 Rh2CG368600 Rh2DG405600 Rh6AG390300 Rh6BG398700 Rh6CG404600 Rh6DG391300
rosa_wichuraiana	Rw2G031240 Rw6G034070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	592
Acc36I	ACCTGC	2 cut(s)	586, 592
AccB7I	CCANNNNNTGG	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	504
AclWI	GGATC	3 cut(s)	91, 464, 476
AcuI	CTGAAG	2 cut(s)	91, 593
AfaI	GTAC	1 cut(s)	136
AfeI	AGCGCT	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	36, 58
AgsI	TTSAA	1 cut(s)	621
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	7 cut(s)	125, 166, 224, 264, 357, 494, 631
AluI	AGCT	7 cut(s)	125, 166, 224, 264, 357, 494, 631
Alw21I	GWGCWC	1 cut(s)	226
AlwI	GGATC	3 cut(s)	91, 464, 476
AlwNI	CAGNNNCTG	1 cut(s)	323
Aor51HI	AGCGCT	1 cut(s)	335
AoxI	GGCC	3 cut(s)	235, 439, 590
ApeKI	GCWGC	2 cut(s)	62, 533
AseI	ATTAAT	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	439
BanII	GRGCYC	2 cut(s)	226, 379
BarI	GAAGNNNNNNTAC	2 cut(s)	192, 224
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	49, 520
BccI	CCATC	2 cut(s)	30, 34
BciT130I	CCWGG	1 cut(s)	219
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	337
BfuAI	ACCTGC	2 cut(s)	586, 592
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	2 cut(s)	63, 534
BlsI	GCNGC	2 cut(s)	64, 535
Bme1390I	CCNGG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	2 cut(s)	376, 440
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	609
BpmI	CTGGAG	3 cut(s)	240, 314, 393
BsaJI	CCNNGG	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 58
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	3 cut(s)	41, 45, 411
BseLI	CCNNNNNNNGG	2 cut(s)	36, 58
BseMI	GCAATG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	49, 520
BseYI	CCCAGC	1 cut(s)	162
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	3 cut(s)	237, 441, 592
BsiHKAI	GWGCWC	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	36, 58
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	3 cut(s)	237, 441, 592
Bsp1286I	GDGCHC	2 cut(s)	226, 379
Bsp143I	GATC	6 cut(s)	96, 180, 325, 456, 481, 528
BspANI	GGCC	3 cut(s)	237, 441, 592
BspLI	GGNNCC	2 cut(s)	376, 440
BspMI	ACCTGC	2 cut(s)	586, 592
BspPI	GGATC	3 cut(s)	91, 464, 476
BspQI	GCTCTTC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	6 cut(s)	96, 180, 325, 456, 481, 528
Bst2UI	CCWGG	1 cut(s)	219
Bst6I	CTCTTC	3 cut(s)	110, 213, 612
BstC8I	GCNNGC	2 cut(s)	67, 522
BstDEI	CTNAG	3 cut(s)	337, 460, 627
BstF5I	GGATG	3 cut(s)	41, 45, 411
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	6 cut(s)	99, 183, 328, 459, 484, 531
BstMBI	GATC	6 cut(s)	96, 180, 325, 456, 481, 528
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 530
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	49, 520
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	4 cut(s)	96, 180, 456, 481
BstYI	RGATCY	4 cut(s)	96, 180, 456, 481
BsuRI	GGCC	3 cut(s)	237, 441, 592
BtsCI	GGATG	3 cut(s)	41, 45, 411
BveI	ACCTGC	2 cut(s)	586, 592
Cac8I	GCNNGC	2 cut(s)	67, 522
CaiI	CAGNNNCTG	1 cut(s)	323
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	3 cut(s)	117, 250, 412
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	3 cut(s)	337, 460, 627
DpnI	GATC	6 cut(s)	98, 182, 327, 458, 483, 530
DpnII	GATC	6 cut(s)	96, 180, 325, 456, 481, 528
Eam1104I	CTCTTC	3 cut(s)	110, 213, 612
EarI	CTCTTC	3 cut(s)	110, 213, 612
Ecl136II	GAGCTC	1 cut(s)	224
Eco147I	AGGCCT	1 cut(s)	592
Eco24I	GRGCYC	2 cut(s)	226, 379
Eco47III	AGCGCT	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	224
Eco57I	CTGAAG	2 cut(s)	91, 593
EcoICRI	GAGCTC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	217
EcoT38I	GRGCYC	2 cut(s)	226, 379
FaeI	CATG	3 cut(s)	120, 253, 415
FaiI	YATR	8 cut(s)	118, 131, 251, 288, 413, 501, 515, 555
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	3 cut(s)	116, 249, 411
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	63, 534
FokI	GGATG	3 cut(s)	48, 52, 418
FriOI	GRGCYC	2 cut(s)	226, 379
Fsp4HI	GCNGC	2 cut(s)	63, 534
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	2 cut(s)	63, 534
GsaI	CCCAGC	1 cut(s)	166
GsuI	CTGGAG	3 cut(s)	240, 314, 393
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	3 cut(s)	237, 441, 592
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	3 cut(s)	120, 253, 415
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
Hpy166II	GTNNAC	3 cut(s)	135, 475, 505
Hpy188I	TCNGA	4 cut(s)	96, 110, 393, 612
Hpy8I	GTNNAC	3 cut(s)	135, 475, 505
Hpy99I	CGWCG	2 cut(s)	25, 28
HpyAV	CCTTC	2 cut(s)	52, 446
HpyCH4V	TGCA	6 cut(s)	120, 148, 230, 302, 581, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 530
HpyF3I	CTNAG	3 cut(s)	337, 460, 627
Hsp92II	CATG	3 cut(s)	120, 253, 415
HspAI	GCGC	1 cut(s)	334
Kzo9I	GATC	6 cut(s)	96, 180, 325, 456, 481, 528
LguI	GCTCTTC	1 cut(s)	213
LmnI	GCTCC	4 cut(s)	221, 262, 354, 374
Lsp1109I	GCAGC	2 cut(s)	49, 520
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	6 cut(s)	98, 182, 327, 458, 483, 530
MboI	GATC	6 cut(s)	96, 180, 325, 456, 481, 528
MboII	GAAGA	8 cut(s)	6, 97, 150, 200, 574, 577, 599, 609
MflI	RGATCY	4 cut(s)	96, 180, 456, 481
MhlI	GDGCHC	2 cut(s)	226, 379
MluCI	AATT	1 cut(s)	432
MnlI	CCTC	6 cut(s)	248, 334, 396, 452, 606, 615
MseI	TTAA	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	308, 530
NdeII	GATC	6 cut(s)	96, 180, 325, 456, 481, 528
NlaIII	CATG	3 cut(s)	120, 253, 415
NlaIV	GGNNCC	2 cut(s)	376, 440
NspI	RCATGY	1 cut(s)	415
PaqCI	CACCTGC	1 cut(s)	592
PceI	AGGCCT	1 cut(s)	592
PciSI	GCTCTTC	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	64, 535
PshBI	ATTAAT	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	376, 440
PspPI	GGNCC	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	4 cut(s)	96, 180, 456, 481
PvuII	CAGCTG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	226
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	2 cut(s)	63, 534
Sau3AI	GATC	6 cut(s)	96, 180, 325, 456, 481, 528
Sau96I	GGNCC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	2 cut(s)	226, 379
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	432
SseBI	AGGCCT	1 cut(s)	592
SspMI	CTAG	1 cut(s)	588
SstI	GAGCTC	1 cut(s)	226
StuI	AGGCCT	1 cut(s)	592
StyD4I	CCNGG	1 cut(s)	217
TasI	AATT	1 cut(s)	432
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TseI	GCWGC	2 cut(s)	62, 533
TspDTI	ATGAA	3 cut(s)	6, 67, 531
Van91I	CCANNNNNTGG	1 cut(s)	36
VspI	ATTAAT	1 cut(s)	431
XceI	RCATGY	1 cut(s)	415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	504
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.