Rroxscaffold_7G00169810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005492
Physical Location & Seq
Reverse (-)
10350462 .. 10352634
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169810.1

Sequence Viewer

Length: 645 bp
ATGGCAACTGCACAATCTTCTTCATCGTCGTCGTCTAAAGGATGGATGGGCAATATCCAAACGAAGGCTGCTCGCATCTTTTTCATTATAATCATTTTTCAGATCCCACTTTTCAGAGTTCCATGCAGAGCTGGTATGTGTACCACACCGTTGCATTTCACATCTTCCCAGCTGATTACAAGTGAGATCTTTCCTGTTCCTGTAGTAAAGGCTCTTCTCTACCCTGGATCTCTTGCAAATGGCCTCGTAAGGAACATGACTGTTCCAAGCTGGAATAACTTGTTAGAAATCTATAACTTGACCAATGCAAAGGAAGCCAATCCAGTTACTGATCTCCAGCGTTTAGAGGTTTTAACAGGGAGCTACTTTTCTGTGGCTGGAGCCCTTGTGGGTGTTCTGAAATCAGGGAGGATGAGCATGTTTGGGACACTTCTATTAATTTGGGGCCTCATCAAAGAAGGGATCTTAGGAAAGCCTGTGAACACAGATCCTACTAAAGCTGTCTATGTCTACCCAACTATGTTGCTTGCCTTGATCGCTGCCTTCTCATCTATAAAGTATAATGCGAAGAAGATTGTTAGACCTGCACCTGCTAGGCCTATTGCAAAGCCTCTTCAGAGGTCTTCAAAATCTAAGCTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.29

Weight (kDa)

10.29

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 89
AarI CACCTGC 1 cut(s) 598
Acc36I ACCTGC 2 cut(s) 592, 598
AccI GTMKAC 1 cut(s) 510
AclWI GGATC 4 cut(s) 97, 235, 470, 482
AcuI CTGAAG 1 cut(s) 599
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 1 cut(s) 627
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 6 cut(s) 131, 172, 270, 363, 500, 637
AluI AGCT 6 cut(s) 131, 172, 270, 363, 500, 637
AlwI GGATC 4 cut(s) 97, 235, 470, 482
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 3 cut(s) 241, 445, 596
ApeKI GCWGC 2 cut(s) 68, 539
AseI ATTAAT 1 cut(s) 437
AspS9I GGNCC 1 cut(s) 445
BanII GRGCYC 1 cut(s) 385
BarI GAAGNNNNNNTAC 2 cut(s) 198, 230
BbsI GAAGAC 1 cut(s) 615
BbvI GCAGC 2 cut(s) 55, 526
BccI CCATC 2 cut(s) 36, 40
BciT130I CCWGG 1 cut(s) 225
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 1 cut(s) 201
BfuAI ACCTGC 2 cut(s) 592, 598
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 69, 540
BlsI GCNGC 2 cut(s) 70, 541
Bme1390I CCNGG 1 cut(s) 225
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 2 cut(s) 382, 446
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 615
BpmI CTGGAG 2 cut(s) 320, 399
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 323
BseBI CCWGG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 3 cut(s) 47, 51, 417
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 323
BseXI GCAGC 2 cut(s) 55, 526
BseYI CCCAGC 1 cut(s) 168
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 3 cut(s) 243, 447, 598
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 3 cut(s) 243, 447, 598
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 7 cut(s) 102, 186, 227, 331, 462, 487, 534
BspANI GGCC 3 cut(s) 243, 447, 598
BspLI GGNNCC 2 cut(s) 382, 446
BspMI ACCTGC 2 cut(s) 592, 598
BspPI GGATC 4 cut(s) 97, 235, 470, 482
BspQI GCTCTTC 1 cut(s) 219
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 7 cut(s) 102, 186, 227, 331, 462, 487, 534
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 150, 262
Bst6I CTCTTC 2 cut(s) 219, 618
BstC8I GCNNGC 2 cut(s) 73, 528
BstDEI CTNAG 2 cut(s) 466, 633
BstF5I GGATG 3 cut(s) 47, 51, 417
BstKTI GATC 7 cut(s) 105, 189, 230, 334, 465, 490, 537
BstMBI GATC 7 cut(s) 102, 186, 227, 331, 462, 487, 534
BstMWI GCNNNNNNNGC 2 cut(s) 314, 536
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 55, 526
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 5 cut(s) 102, 186, 227, 462, 487
BstYI RGATCY 5 cut(s) 102, 186, 227, 462, 487
BsuRI GGCC 3 cut(s) 243, 447, 598
BtsCI GGATG 3 cut(s) 47, 51, 417
BveI ACCTGC 2 cut(s) 592, 598
Cac8I GCNNGC 2 cut(s) 73, 528
CaiI CAGNNNCTG 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 445
Csp6I GTAC 1 cut(s) 141
CviAII CATG 3 cut(s) 123, 256, 418
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 2 cut(s) 466, 633
DpnI GATC 7 cut(s) 104, 188, 229, 333, 464, 489, 536
DpnII GATC 7 cut(s) 102, 186, 227, 331, 462, 487, 534
Eam1104I CTCTTC 2 cut(s) 219, 618
EarI CTCTTC 2 cut(s) 219, 618
Eco147I AGGCCT 1 cut(s) 598
Eco24I GRGCYC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 599
EcoO109I RGGNCCY 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 385
FaeI CATG 3 cut(s) 126, 259, 421
FaqI GGGAC 1 cut(s) 439
FatI CATG 3 cut(s) 122, 255, 417
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 2 cut(s) 69, 540
FokI GGATG 3 cut(s) 54, 58, 424
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 69, 540
FspBI CTAG 1 cut(s) 594
GluI GCNGC 2 cut(s) 69, 540
GsaI CCCAGC 1 cut(s) 172
GsuI CTGGAG 2 cut(s) 320, 399
HaeIII GGCC 3 cut(s) 243, 447, 598
Hin1II CATG 3 cut(s) 126, 259, 421
Hpy166II GTNNAC 3 cut(s) 141, 481, 511
Hpy188I TCNGA 4 cut(s) 102, 116, 399, 618
Hpy8I GTNNAC 3 cut(s) 141, 481, 511
Hpy99I CGWCG 2 cut(s) 31, 34
HpyAV CCTTC 3 cut(s) 58, 452, 553
HpyCH4III ACNGT 2 cut(s) 150, 262
HpyCH4V TGCA 7 cut(s) 11, 126, 154, 236, 308, 587, 605
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 536
HpyF3I CTNAG 2 cut(s) 466, 633
Hsp92II CATG 3 cut(s) 126, 259, 421
Kzo9I GATC 7 cut(s) 102, 186, 227, 331, 462, 487, 534
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 2 cut(s) 360, 380
Lsp1109I GCAGC 2 cut(s) 55, 526
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 594
MaeIII GTNAC 1 cut(s) 325
MalI GATC 7 cut(s) 104, 188, 229, 333, 464, 489, 536
MboI GATC 7 cut(s) 102, 186, 227, 331, 462, 487, 534
MboII GAAGA 8 cut(s) 9, 12, 156, 206, 580, 583, 605, 615
MflI RGATCY 5 cut(s) 102, 186, 227, 462, 487
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 1 cut(s) 438
MnlI CCTC 6 cut(s) 254, 340, 402, 458, 612, 621
MseI TTAA 2 cut(s) 353, 437
MspA1I CMGCKG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 314, 536
NdeII GATC 7 cut(s) 102, 186, 227, 331, 462, 487, 534
NlaIII CATG 3 cut(s) 126, 259, 421
NlaIV GGNNCC 2 cut(s) 382, 446
NspI RCATGY 1 cut(s) 421
PaqCI CACCTGC 1 cut(s) 598
PceI AGGCCT 1 cut(s) 598
PciSI GCTCTTC 1 cut(s) 219
PkrI GCNGC 2 cut(s) 70, 541
PshBI ATTAAT 1 cut(s) 437
PsiI TTATAA 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 382, 446
PspPI GGNCC 1 cut(s) 445
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 5 cut(s) 102, 186, 227, 462, 487
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 353, 437
SatI GCNGC 2 cut(s) 69, 540
Sau3AI GATC 7 cut(s) 102, 186, 227, 331, 462, 487, 534
Sau96I GGNCC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 201
Sse9I AATT 1 cut(s) 438
SseBI AGGCCT 1 cut(s) 598
SspMI CTAG 1 cut(s) 594
StuI AGGCCT 1 cut(s) 598
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 2 cut(s) 150, 262
TasI AATT 1 cut(s) 438
Tru1I TTAA 2 cut(s) 353, 437
Tru9I TTAA 2 cut(s) 353, 437
TseI GCWGC 2 cut(s) 68, 539
TspDTI ATGAA 2 cut(s) 12, 73
VspI ATTAAT 1 cut(s) 437
XceI RCATGY 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 510
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.