AT5G11460

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006492
Physical Location & Seq
Reverse (-)
3656582 .. 3659025
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11460.1

Sequence Viewer

Length: 1035 bp
ATGTCTCAGCATTCCAACTATCAAATGACCACTGCTTCTGATTACTATTCGACAAAACCGGTCTTGTCAGCGATTAGAAGCCACAAACTCATCTCTAGTGTGTTTGAAGGAAAGTGTCCATCTGACTATGAATCAGCTTGGAGCCCAACTTCTCCTTTGGATTTCAGATTGTTCTCCACTTTAGGGAACCCTTTTGCTGCTTCTTCTTCGAGGTCAATCTGGAGAGGGAAACAAAGGAGCTGGGATTCTGGTAAAGTAGGCTTGAGCATTGTGCATTCTCTTGTTGATGATCATCACACTGATTCATCAGCAACGATTGTTTTACCATCACCGGATAGTAAAAACATAATCTTTGGATCTTTGATGAGAAGTGGCCAGAAACCTCATCTACTCTCTCAACCCTTTACCAAAGCTTTGATGCCCAAGGATGTTATACCAAATGCTGTTTTTGAGATTGGACATGATGTGATTGATGTGCTTGAGCTTCGAAAATCTGGCTCCGTCGATGCTGCTTACTGTTCCGGTGCTGAGAACTTCAGTGTGAACAACAATGCTTGTCAGGTGACCAAGCAAGACCCAGGATCACTTAATGGGGGTACTGAAAGTGACATGGAGATCTCAGAGGACTACACTTGTGTTATTTCACATGGTCCTAACCCCAAAACCACCCATTTTTACGGGGATCAGGTTATGGAGTCCGTAGAGCGCGAGGAGTTGAAGAACCGTTGTTGCAAGAACGAGAAAGAGAGCATTTTTGCTGTTGCTCCTCTCGACTTGACAACACCTGTTGATGTGTTACCTCCCAAAGACTTCTTGAGCTTCTGCTACGGCTGTAGCAAGAAGTTGGGTATGGGAGAAGATATATACATGTACAGTGGATACAAAGCGTTCTGCAGTAGTGAGTGCCGTTCAAAGGAGATAGATCTGGATGAGGAAATGGAGGATGGAGATGAAGAAGAAGCAATCAAGTCTGTCTCGTCTTCAGACAAGGAGTCTAAGAAGAAGAGTAACGGTGTGTTCTTCACCGTGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

344

Amino Acids

37.87

Weight (kDa)

5.13

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 267 - 312 1.5e-20 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 708
AclWI GGATC 3 cut(s) 364, 589, 690
AcoI YGGCCR 1 cut(s) 373
AcuI CTGAAG 2 cut(s) 520, 966
AfaI GTAC 2 cut(s) 598, 872
AfiI CCNNNNNNNGG 2 cut(s) 183, 913
AflIII ACRYGT 1 cut(s) 867
AgeI ACCGGT 1 cut(s) 58
AgsI TTSAA 3 cut(s) 107, 718, 912
AhdI GACNNNNNGTC 1 cut(s) 991
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 5 cut(s) 137, 240, 413, 484, 819
AluI AGCT 5 cut(s) 137, 240, 413, 484, 819
Alw26I GTCTC 2 cut(s) 9, 979
AlwI GGATC 3 cut(s) 364, 589, 690
AoxI GGCC 1 cut(s) 373
ApeKI GCWGC 2 cut(s) 197, 509
AsiGI ACCGGT 1 cut(s) 58
AspLEI GCGC 1 cut(s) 708
AspS9I GGNCC 1 cut(s) 650
AsuHPI GGTGA 3 cut(s) 321, 574, 1015
AsuII TTCGAA 1 cut(s) 487
AvaII GGWCC 1 cut(s) 650
BalI TGGCCA 1 cut(s) 375
BanII GRGCYC 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 972
BbvI GCAGC 2 cut(s) 184, 496
BccI CCATC 3 cut(s) 127, 334, 938
BceAI ACGGC 2 cut(s) 844, 891
BciT130I CCWGG 1 cut(s) 579
BciVI GTATCC 1 cut(s) 872
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 9, 979
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 2 cut(s) 832, 892
BfuI GTATCC 1 cut(s) 872
BglII AGATCT 2 cut(s) 615, 922
BisI GCNGC 2 cut(s) 198, 510
BlsI GCNGC 2 cut(s) 199, 511
Bme1390I CCNGG 1 cut(s) 579
Bme18I GGWCC 1 cut(s) 650
BmeRI GACNNNNNGTC 1 cut(s) 991
BmgT120I GGNCC 1 cut(s) 650
BmiI GGNNCC 3 cut(s) 143, 188, 499
BmrFI CCNGG 1 cut(s) 579
BmsI GCATC 2 cut(s) 408, 496
BpiI GAAGAC 1 cut(s) 972
BpmI CTGGAG 1 cut(s) 241
Bpu14I TTCGAA 1 cut(s) 487
BpuEI CTTGAG 3 cut(s) 283, 500, 835
BsaBI GATNNNNATC 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 423, 577, 1026
BsaWI WCCGGW 3 cut(s) 58, 331, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 913
Bse118I RCCGGY 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 3 cut(s) 423, 577, 1026
BseGI GGATG 3 cut(s) 433, 934, 949
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 183, 913
BseMII CTCAG 3 cut(s) 20, 519, 633
BseRI GAGGAG 2 cut(s) 725, 756
BseXI GCAGC 2 cut(s) 184, 496
BseYI CCCAGC 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 708
BshFI GGCC 1 cut(s) 375
BshTI ACCGGT 1 cut(s) 58
BsiSI CCGG 3 cut(s) 59, 332, 522
BslI CCNNNNNNNGG 2 cut(s) 183, 913
BsmAI GTCTC 2 cut(s) 9, 979
BsmI GAATGC 2 cut(s) 10, 274
BsnI GGCC 1 cut(s) 375
Bsp119I TTCGAA 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 146
Bsp1407I TGTACA 1 cut(s) 870
Bsp143I GATC 6 cut(s) 289, 356, 581, 615, 682, 922
BspANI GGCC 1 cut(s) 375
BspCNI CTCAG 3 cut(s) 19, 520, 632
BspFNI CGCG 1 cut(s) 708
BspLI GGNNCC 3 cut(s) 143, 188, 499
BspMAI CTGCAG 1 cut(s) 896
BspPI GGATC 3 cut(s) 364, 589, 690
BspT104I TTCGAA 1 cut(s) 487
BsrFI RCCGGY 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 870
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 3 cut(s) 423, 577, 1026
BssMI GATC 6 cut(s) 289, 356, 581, 615, 682, 922
BssT1I CCWWGG 1 cut(s) 423
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 5 cut(s) 518, 725, 875, 1013, 1027
Bst6I CTCTTC 1 cut(s) 998
BstAUI TGTACA 1 cut(s) 870
BstBI TTCGAA 1 cut(s) 487
BstDEI CTNAG 4 cut(s) 6, 528, 619, 996
BstDSI CCRYGG 1 cut(s) 1026
BstEII GGTNACC 1 cut(s) 562
BstF5I GGATG 3 cut(s) 433, 934, 949
BstFNI CGCG 1 cut(s) 708
BstHHI GCGC 1 cut(s) 708
BstKTI GATC 6 cut(s) 292, 359, 584, 618, 685, 925
BstMAI GTCTC 2 cut(s) 9, 979
BstMBI GATC 6 cut(s) 289, 356, 581, 615, 682, 922
BstNI CCWGG 1 cut(s) 579
BstNSI RCATGY 1 cut(s) 871
BstPI GGTNACC 1 cut(s) 562
BstSCI CCNGG 1 cut(s) 577
BstSFI CTRYAG 2 cut(s) 832, 892
BstUI CGCG 1 cut(s) 708
BstV1I GCAGC 2 cut(s) 184, 496
BstV2I GAAGAC 1 cut(s) 972
BstX2I RGATCY 3 cut(s) 356, 615, 922
BstYI RGATCY 3 cut(s) 356, 615, 922
BsuI GTATCC 1 cut(s) 872
BsuRI GGCC 1 cut(s) 375
BtgI CCRYGG 1 cut(s) 1026
BtsCI GGATG 3 cut(s) 433, 934, 949
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 4 cut(s) 30, 297, 544, 880
CfoI GCGC 1 cut(s) 708
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 650
Csp6I GTAC 2 cut(s) 597, 871
CspAI ACCGGT 1 cut(s) 58
CviAII CATG 4 cut(s) 461, 610, 647, 868
CviQI GTAC 2 cut(s) 597, 871
DdeI CTNAG 4 cut(s) 6, 528, 619, 996
DpnI GATC 6 cut(s) 291, 358, 583, 617, 684, 924
DpnII GATC 6 cut(s) 289, 356, 581, 615, 682, 922
DriI GACNNNNNGTC 1 cut(s) 991
EaeI YGGCCR 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 998
Eam1105I GACNNNNNGTC 1 cut(s) 991
EarI CTCTTC 1 cut(s) 998
Eco130I CCWWGG 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 650
Eco57I CTGAAG 2 cut(s) 520, 966
Eco91I GGTNACC 1 cut(s) 562
EcoO65I GGTNACC 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 4 cut(s) 464, 613, 650, 871
FatI CATG 4 cut(s) 460, 609, 646, 867
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 198, 510
FokI GGATG 3 cut(s) 440, 941, 956
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 198, 510
FspBI CTAG 1 cut(s) 96
GlaI GCGC 1 cut(s) 707
GluI GCNGC 2 cut(s) 198, 510
GsaI CCCAGC 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 241
HaeIII GGCC 1 cut(s) 375
HapII CCGG 3 cut(s) 59, 332, 522
HhaI GCGC 1 cut(s) 708
Hin1II CATG 4 cut(s) 464, 613, 650, 871
Hin6I GCGC 1 cut(s) 706
HinP1I GCGC 1 cut(s) 706
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 5 cut(s) 131, 245, 302, 695, 992
HpaII CCGG 3 cut(s) 59, 332, 522
HphI GGTGA 3 cut(s) 321, 574, 1015
Hpy166II GTNNAC 1 cut(s) 544
Hpy188I TCNGA 5 cut(s) 40, 124, 167, 622, 985
Hpy188III TCNNGA 4 cut(s) 220, 770, 814, 926
Hpy8I GTNNAC 1 cut(s) 544
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 5 cut(s) 518, 725, 875, 1013, 1027
HpyCH4V TGCA 3 cut(s) 274, 732, 894
HpyF3I CTNAG 4 cut(s) 6, 528, 619, 996
Hsp92II CATG 4 cut(s) 464, 613, 650, 871
HspAI GCGC 1 cut(s) 706
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 6 cut(s) 289, 356, 581, 615, 682, 922
LmnI GCTCC 4 cut(s) 141, 237, 503, 769
Lsp1109I GCAGC 2 cut(s) 184, 496
LweI GCATC 2 cut(s) 408, 496
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 4 cut(s) 562, 605, 795, 1007
MalI GATC 6 cut(s) 291, 358, 583, 617, 684, 924
MboI GATC 6 cut(s) 289, 356, 581, 615, 682, 922
MflI RGATCY 3 cut(s) 356, 615, 922
MhlI GDGCHC 1 cut(s) 146
MlsI TGGCCA 1 cut(s) 375
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 2 cut(s) 704, 1001
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 9 cut(s) 204, 218, 393, 616, 703, 777, 810, 925, 934
Mox20I TGGCCA 1 cut(s) 375
MscI TGGCCA 1 cut(s) 375
MseI TTAA 1 cut(s) 588
Msp20I TGGCCA 1 cut(s) 375
MspI CCGG 3 cut(s) 59, 332, 522
MspR9I CCNGG 1 cut(s) 579
Mva1269I GAATGC 2 cut(s) 10, 274
MvaI CCWGG 1 cut(s) 579
MvnI CGCG 1 cut(s) 708
NdeII GATC 6 cut(s) 289, 356, 581, 615, 682, 922
NlaIII CATG 4 cut(s) 464, 613, 650, 871
NlaIV GGNNCC 3 cut(s) 143, 188, 499
NmuCI GTSAC 2 cut(s) 562, 605
NspI RCATGY 1 cut(s) 871
NspV TTCGAA 1 cut(s) 487
PciI ACATGT 1 cut(s) 867
PctI GAATGC 2 cut(s) 10, 274
PfeI GAWTC 3 cut(s) 131, 245, 302
PinAI ACCGGT 1 cut(s) 58
PkrI GCNGC 2 cut(s) 199, 511
PleI GAGTC 2 cut(s) 703, 1000
PpsI GAGTC 2 cut(s) 703, 1000
PscI ACATGT 1 cut(s) 867
Psp6I CCWGG 1 cut(s) 577
PspEI GGTNACC 1 cut(s) 562
PspFI CCCAGC 1 cut(s) 240
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 3 cut(s) 143, 188, 499
PspPI GGNCC 1 cut(s) 650
PstI CTGCAG 1 cut(s) 896
PsuI RGATCY 3 cut(s) 356, 615, 922
RsaI GTAC 2 cut(s) 598, 872
RsaNI GTAC 2 cut(s) 597, 871
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 2 cut(s) 198, 510
Sau3AI GATC 6 cut(s) 289, 356, 581, 615, 682, 922
Sau96I GGNCC 1 cut(s) 650
SchI GAGTC 2 cut(s) 704, 1001
ScrFI CCNGG 1 cut(s) 579
SduI GDGCHC 1 cut(s) 146
SfaNI GCATC 2 cut(s) 408, 496
SfcI CTRYAG 2 cut(s) 832, 892
SfuI TTCGAA 1 cut(s) 487
SinI GGWCC 1 cut(s) 650
SmlI CTYRAG 3 cut(s) 262, 479, 814
SmoI CTYRAG 3 cut(s) 262, 479, 814
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 577
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 5 cut(s) 518, 725, 875, 1013, 1027
TaqI TCGA 5 cut(s) 50, 209, 487, 504, 771
TatI WGTACW 1 cut(s) 870
TfiI GAWTC 3 cut(s) 131, 245, 302
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 4 cut(s) 37, 304, 544, 880
TseFI GTSAC 2 cut(s) 562, 605
TseI GCWGC 2 cut(s) 197, 509
Tsp45I GTSAC 2 cut(s) 562, 605
TspDTI ATGAA 3 cut(s) 144, 294, 966
TspGWI ACGGA 2 cut(s) 490, 688
TspRI CASTG 4 cut(s) 37, 304, 544, 880
VpaK11BI GGWCC 1 cut(s) 650
XceI RCATGY 1 cut(s) 871
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.