Rroxscaffold_7G00156660

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006492
Physical Location & Seq
Reverse (-)
516922 .. 518231
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156660.1

Sequence Viewer

Length: 1260 bp
ATGCTGAGGAAGAGGACCAGGTCAACTCAGAAGGATCAAGATCAACACCAAATGGGGCATCTGCCAATTTCTAATGCTGGGTCTGAGTCACATTTCCGGTCTGATGTTCTTGGACCGAATCCGAAAAGCAACTCTTTTTTCACTGTCCCTGGTCTGTTTGTGGGGTTGAGTCCTATAGGTTTAACAGATTCTGATTCAGTTAGGAGCCCAACTTCGCCTCTAGATTTCAGGGTGTTTTCGAATCTAGGCAGCCCCTTTAGGTCCCCAGGATCACCTCTTGATGGGCATAAGAGGAGCTGGGGTAGTAGTAAAGTAGGCTTAAGCATCATTGACTCTCTTGATGATGATGTCAAGTTTTCTGGGAAAGTTCCCAGATCATCAGAGAGTAAGAACATTCTTTTTGGACCTGGGATGAGGACTAAAACCCGAGATTCTCAATCCAATACCAATTCTATTGGGTCACCTAGATCTCTGCCTAAGAATTATGCAATTTTCCCTCATTCCAAAGTCAAGTCTCCTTTACAAGAGAGTAGCTCTGATGTTGTTTTTGAAATTGGAGAAACACCATCAGAACCTGAGTCATTTGGAAAAATAAGGTCTTGCTCACTGGATTCTGCTAGGACTTTTCAACCCTATCAGAATCTAACCAACCCACAATTTATTGGAGGAAGCCCCAACTCAACCACGCAAATGACTGTTGGATCCATTGGTTCTGGCAATGGGTTTGTTGGGTCTCTCTCAGCTAGTGAGATTGAGCTTTCTGAGGATTATACTTGTGTAATTTCTCATGGTGCCAATCCCAAAACAACTCATATCTTTGGTGACTGCGTTTTGGGATGCCACTCTGAAGATTTGAGCAATTTTGGTAAGAATGAGAGGATGGAAATTGGATCACCTCAGCTGGCTACGAGCTTGGGGAGTTTTGTTCAGTACCCCTCAAACAATTTCCTGAGCGTCTGCCACTACTGTAACAAAGAACTGGAAGAGGGGAAAGACATTTTCATATACAGGTATGAAGCAGACATATCTACTAGCCTATTAATGAACAAAGCTTTGCCAAGTAGTTTTGAACTTCAGTATTTATATCATTTGATTTCCTGCAGGGGTGAGAAAGCATTTTGCAGTTTGAGTTGTCGCTCTGTGGAGATTTTGAATGATGAGGAATTGGAGCAGTGCGATGACGAATCTTCAGAAAAGCCTCTCGAGTCAGATGATGGCACGGAACTTTTTTTCGAAACTGGCCTCATTGCTGATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

419

Amino Acids

45.83

Weight (kDa)

5.23

Isoelectric Point (pI)

61.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 310 - 340 9.1e-10 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 791
AclWI GGATC 5 cut(s) 42, 277, 696, 709, 898
AcuI CTGAAG 3 cut(s) 867, 1058, 1173
AfaI GTAC 1 cut(s) 932
AfiI CCNNNNNNNGG 1 cut(s) 281
AflII CTTAAG 1 cut(s) 319
AgsI TTSAA 4 cut(s) 551, 629, 1070, 1153
AjnI CCWGG 4 cut(s) 17, 148, 265, 406
AluBI AGCT 7 cut(s) 297, 534, 743, 757, 901, 912, 1052
AluI AGCT 7 cut(s) 297, 534, 743, 757, 901, 912, 1052
Alw26I GTCTC 2 cut(s) 519, 738
AlwI GGATC 5 cut(s) 42, 277, 696, 709, 898
AlwNI CAGNNNCTG 2 cut(s) 191, 575
Ama87I CYCGRG 2 cut(s) 426, 1202
AoxI GGCC 1 cut(s) 1240
ApeKI GCWGC 1 cut(s) 249
AseI ATTAAT 1 cut(s) 1040
AspS9I GGNCC 4 cut(s) 15, 113, 261, 404
AsuHPI GGTGA 5 cut(s) 264, 453, 833, 885, 1118
AsuII TTCGAA 2 cut(s) 239, 1233
AvaI CYCGRG 2 cut(s) 426, 1202
AvaII GGWCC 4 cut(s) 15, 113, 261, 404
BamHI GGATCC 1 cut(s) 701
BanI GGYRCC 1 cut(s) 791
BanII GRGCYC 1 cut(s) 209
BbvCI CCTCAGC 2 cut(s) 5, 897
BbvI GCAGC 1 cut(s) 261
BccI CCATC 4 cut(s) 275, 574, 874, 1208
BciT130I CCWGG 4 cut(s) 19, 150, 267, 408
BcoDI GTCTC 2 cut(s) 519, 738
BfaI CTAG 6 cut(s) 221, 245, 465, 618, 744, 1032
BfmI CTRYAG 2 cut(s) 174, 1099
BfrI CTTAAG 1 cut(s) 319
BglII AGATCT 1 cut(s) 467
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 4 cut(s) 19, 150, 267, 408
Bme18I GGWCC 4 cut(s) 15, 113, 261, 404
BmeT110I CYCGRG 2 cut(s) 426, 1202
BmgT120I GGNCC 4 cut(s) 15, 113, 261, 404
BmiI GGNNCC 4 cut(s) 206, 263, 703, 793
BmrFI CCNGG 4 cut(s) 19, 150, 267, 408
BmsI GCATC 3 cut(s) 67, 333, 827
BplI GAGNNNNNCTC 2 cut(s) 518, 550
Bpu10I CCTNAGC 3 cut(s) 5, 897, 950
Bpu14I TTCGAA 2 cut(s) 239, 1233
BsaBI GATNNNNATC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 738
BsaJI CCNNGG 3 cut(s) 148, 265, 407
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 3 cut(s) 612, 984, 1243
Bse3DI GCAATG 2 cut(s) 724, 1245
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 4 cut(s) 19, 150, 267, 408
BseDI CCNNGG 3 cut(s) 148, 265, 407
BseGI GGATG 3 cut(s) 417, 842, 885
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 2 cut(s) 724, 1245
BseMII CTCAG 7 cut(s) 41, 75, 567, 753, 753, 911, 941
BseNI ACTGG 3 cut(s) 612, 984, 1243
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 1 cut(s) 261
BseYI CCCAGC 2 cut(s) 77, 297
BshFI GGCC 1 cut(s) 1242
BshNI GGYRCC 1 cut(s) 791
BsiHKCI CYCGRG 2 cut(s) 426, 1202
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 2 cut(s) 131, 247
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 2 cut(s) 519, 738
BsmFI GGGAC 2 cut(s) 131, 247
BsnI GGCC 1 cut(s) 1242
Bso31I GGTCTC 1 cut(s) 738
BsoBI CYCGRG 2 cut(s) 426, 1202
Bsp119I TTCGAA 2 cut(s) 239, 1233
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 7 cut(s) 34, 40, 269, 374, 467, 701, 890
BspANI GGCC 1 cut(s) 1242
BspCNI CTCAG 7 cut(s) 40, 76, 568, 752, 754, 910, 942
BspLI GGNNCC 4 cut(s) 206, 263, 703, 793
BspMAI CTGCAG 1 cut(s) 1103
BspPI GGATC 5 cut(s) 42, 277, 696, 709, 898
BspT104I TTCGAA 2 cut(s) 239, 1233
BspT107I GGYRCC 1 cut(s) 791
BspTI CTTAAG 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 738
BsrDI GCAATG 2 cut(s) 724, 1245
BsrI ACTGG 3 cut(s) 612, 984, 1243
BssECI CCNNGG 3 cut(s) 148, 265, 407
BssMI GATC 7 cut(s) 34, 40, 269, 374, 467, 701, 890
Bst2UI CCWGG 4 cut(s) 19, 150, 267, 408
Bst4CI ACNGT 3 cut(s) 145, 697, 968
Bst6I CTCTTC 2 cut(s) 5, 978
BstAFI CTTAAG 1 cut(s) 319
BstBI TTCGAA 2 cut(s) 239, 1233
BstC8I GCNNGC 1 cut(s) 903
BstDEI CTNAG 9 cut(s) 5, 27, 84, 477, 576, 739, 762, 897, 950
BstEII GGTNACC 1 cut(s) 459
BstF5I GGATG 3 cut(s) 417, 842, 885
BstKTI GATC 7 cut(s) 37, 43, 272, 377, 470, 704, 893
BstMAI GTCTC 2 cut(s) 519, 738
BstMBI GATC 7 cut(s) 34, 40, 269, 374, 467, 701, 890
BstNI CCWGG 4 cut(s) 19, 150, 267, 408
BstPI GGTNACC 1 cut(s) 459
BstSCI CCNGG 4 cut(s) 17, 148, 265, 406
BstSFI CTRYAG 2 cut(s) 174, 1099
BstV1I GCAGC 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 467, 701
BstYI RGATCY 2 cut(s) 467, 701
BsuRI GGCC 1 cut(s) 1242
BtgZI GCGATG 1 cut(s) 1191
BtsCI GGATG 3 cut(s) 417, 842, 885
BtsI GCAGTG 1 cut(s) 1178
BtsIMutI CAGTG 3 cut(s) 141, 605, 1178
Cac8I GCNNGC 1 cut(s) 903
CaiI CAGNNNCTG 2 cut(s) 191, 575
Cfr13I GGNCC 4 cut(s) 15, 113, 261, 404
CseI GACGC 1 cut(s) 943
CsiI ACCWGGT 1 cut(s) 17
Csp6I GTAC 1 cut(s) 931
CviAII CATG 1 cut(s) 788
CviQI GTAC 1 cut(s) 931
DdeI CTNAG 9 cut(s) 5, 27, 84, 477, 576, 739, 762, 897, 950
DpnI GATC 7 cut(s) 36, 42, 271, 376, 469, 703, 892
DpnII GATC 7 cut(s) 34, 40, 269, 374, 467, 701, 890
Eam1104I CTCTTC 2 cut(s) 5, 978
EarI CTCTTC 2 cut(s) 5, 978
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 738
Eco47I GGWCC 4 cut(s) 15, 113, 261, 404
Eco57I CTGAAG 3 cut(s) 867, 1058, 1173
Eco88I CYCGRG 2 cut(s) 426, 1202
Eco91I GGTNACC 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 261
EcoO65I GGTNACC 1 cut(s) 459
EcoRII CCWGG 4 cut(s) 17, 148, 265, 406
EcoT38I GRGCYC 1 cut(s) 209
FaeI CATG 1 cut(s) 791
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FaqI GGGAC 2 cut(s) 131, 247
FatI CATG 1 cut(s) 787
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 3 cut(s) 424, 849, 892
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 250
FspBI CTAG 6 cut(s) 221, 245, 465, 618, 744, 1032
GluI GCNGC 1 cut(s) 250
GsaI CCCAGC 2 cut(s) 81, 301
HaeIII GGCC 1 cut(s) 1242
HapII CCGG 1 cut(s) 97
HgaI GACGC 1 cut(s) 943
Hin1II CATG 1 cut(s) 791
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 1050
HpaII CCGG 1 cut(s) 97
HphI GGTGA 5 cut(s) 264, 453, 833, 885, 1118
Hpy166II GTNNAC 1 cut(s) 24
Hpy188III TCNNGA 6 cut(s) 38, 221, 278, 338, 949, 1202
Hpy8I GTNNAC 1 cut(s) 24
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 3 cut(s) 145, 697, 968
HpyCH4V TGCA 3 cut(s) 488, 1101, 1122
HpyF3I CTNAG 9 cut(s) 5, 27, 84, 477, 576, 739, 762, 897, 950
Hsp92II CATG 1 cut(s) 791
Kzo9I GATC 7 cut(s) 34, 40, 269, 374, 467, 701, 890
LmnI GCTCC 3 cut(s) 204, 294, 1168
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 3 cut(s) 67, 333, 827
MabI ACCWGGT 1 cut(s) 17
MaeI CTAG 6 cut(s) 221, 245, 465, 618, 744, 1032
MaeIII GTNAC 4 cut(s) 87, 459, 821, 968
MalI GATC 7 cut(s) 36, 42, 271, 376, 469, 703, 892
MboI GATC 7 cut(s) 34, 40, 269, 374, 467, 701, 890
MboII GAAGA 4 cut(s) 22, 860, 995, 1179
MflI RGATCY 2 cut(s) 467, 701
MhlI GDGCHC 1 cut(s) 209
MlyI GAGTC 5 cut(s) 95, 178, 326, 587, 1214
MmeI TCCRAC 1 cut(s) 679
MseI TTAA 3 cut(s) 182, 320, 1040
MslI CAYNNNNRTG 1 cut(s) 689
MspA1I CMGCKG 1 cut(s) 901
MspCI CTTAAG 1 cut(s) 319
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 4 cut(s) 19, 150, 267, 408
MvaI CCWGG 4 cut(s) 19, 150, 267, 408
NdeII GATC 7 cut(s) 34, 40, 269, 374, 467, 701, 890
NlaIII CATG 1 cut(s) 791
NlaIV GGNNCC 4 cut(s) 206, 263, 703, 793
NmuCI GTSAC 3 cut(s) 87, 459, 821
NspV TTCGAA 2 cut(s) 239, 1233
PaeR7I CTCGAG 1 cut(s) 1202
PfeI GAWTC 8 cut(s) 118, 188, 194, 241, 431, 611, 640, 1184
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 251
PleI GAGTC 5 cut(s) 94, 177, 326, 586, 1213
PpsI GAGTC 5 cut(s) 94, 177, 326, 586, 1213
PpuMI RGGWCCY 1 cut(s) 261
PshBI ATTAAT 1 cut(s) 1040
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 4 cut(s) 17, 148, 265, 406
PspEI GGTNACC 1 cut(s) 459
PspFI CCCAGC 2 cut(s) 77, 297
PspGI CCWGG 4 cut(s) 17, 148, 265, 406
PspN4I GGNNCC 4 cut(s) 206, 263, 703, 793
PspPI GGNCC 4 cut(s) 15, 113, 261, 404
PspPPI RGGWCCY 1 cut(s) 261
PstI CTGCAG 1 cut(s) 1103
PstNI CAGNNNCTG 2 cut(s) 191, 575
PsuI RGATCY 2 cut(s) 467, 701
PsyI GACNNNGTC 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 901
RsaI GTAC 1 cut(s) 932
RsaNI GTAC 1 cut(s) 931
RseI CAYNNNNRTG 1 cut(s) 689
SaqAI TTAA 3 cut(s) 182, 320, 1040
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 7 cut(s) 34, 40, 269, 374, 467, 701, 890
Sau96I GGNCC 4 cut(s) 15, 113, 261, 404
SbfI CCTGCAGG 1 cut(s) 1103
SchI GAGTC 5 cut(s) 95, 178, 326, 587, 1214
ScrFI CCNGG 4 cut(s) 19, 150, 267, 408
SdaI CCTGCAGG 1 cut(s) 1103
SduI GDGCHC 1 cut(s) 209
SexAI ACCWGGT 1 cut(s) 17
SfaNI GCATC 3 cut(s) 67, 333, 827
SfcI CTRYAG 2 cut(s) 174, 1099
Sfr274I CTCGAG 1 cut(s) 1202
SfuI TTCGAA 2 cut(s) 239, 1233
SinI GGWCC 4 cut(s) 15, 113, 261, 404
SlaI CTCGAG 1 cut(s) 1202
SmiMI CAYNNNNRTG 1 cut(s) 689
SmlI CTYRAG 2 cut(s) 319, 1202
SmoI CTYRAG 2 cut(s) 319, 1202
Sse8387I CCTGCAGG 1 cut(s) 1103
SspMI CTAG 6 cut(s) 221, 245, 465, 618, 744, 1032
StyD4I CCNGG 4 cut(s) 17, 148, 265, 406
TaaI ACNGT 3 cut(s) 145, 697, 968
TaqI TCGA 3 cut(s) 239, 1203, 1233
TaqII GACCGA 1 cut(s) 130
TfiI GAWTC 8 cut(s) 118, 188, 194, 241, 431, 611, 640, 1184
Tru1I TTAA 3 cut(s) 182, 320, 1040
Tru9I TTAA 3 cut(s) 182, 320, 1040
TscAI CASTG 3 cut(s) 148, 612, 1178
TseFI GTSAC 3 cut(s) 87, 459, 821
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 3 cut(s) 87, 459, 821
TspDTI ATGAA 3 cut(s) 991, 1029, 1058
TspGWI ACGGA 1 cut(s) 1235
TspRI CASTG 3 cut(s) 148, 612, 1178
Tth111I GACNNNGTC 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 319
VpaK11BI GGWCC 4 cut(s) 15, 113, 261, 404
VspI ATTAAT 1 cut(s) 1040
XbaI TCTAGA 1 cut(s) 220
XhoI CTCGAG 1 cut(s) 1202
XspI CTAG 6 cut(s) 221, 245, 465, 618, 744, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.