Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006492

Physical Location & Seq

Genomic Coordinates Forward (+)

9641891 .. 9643148

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGGTCATCTGCCAATTTCTGATGCTGCTGCTGGGTCTGATGTTTTAGGGCACAACCCTAAAAGCAACTCTTTTTTCAGTGTTCCTGGTCTGTTTGTGGGGTTGAGTCATAAGGGTTTATCAGATTATGATGCAGTTAGGAGCCCAACTTCTCCTCTAGATTTTAGGGTCTTTTCCAATCTAGGTTACCCCTTTAGGTCCCCAAGGTCCAACCATGATGGGGGGCAGCAGAGGAGCTGGGGTAGCAGTAAAGTAGGATTAAGCATCATAGATTCTATTGATGATGTGAAAATTTTCGGGAAAGTTCCTCAGTCATCTGAGAGTAAGAACATTCTTTTTGGACCCGGAATGAGGATTAATAAAATCCCAGAGCCTCAGTCCAATGCCAAGTGTTTTGATTATTCACCGAAATCTCTGCCTAAGAACTATGCAATTTCCCCTCATTCCAAAATCAAATCTCCTTTACAGAAGGGTAGTTCTGATGTTCTTTTCGAAATCGGAGAAGCCCCATCAGAACCTGAGTCATTCGGGAAAATCCGGTCCTGTTCATTAGATTCTGGTAGAGCATTTTCGACCCTATCAGGATTGAGCAACCTTAACCCCAACTCCACTTCTGGAGATTTTTGCCCGGAAAATTTAACCACCCATCAAGTTATTGGAGGAAGCCCCAATTTAGCCACCCAAATGAAAACTGGATCCATCGAGTCTAGCAATGGGTTTGTCGGGTCTCTTTCAGCAAGTGAGATTGAGCTTTCTGAGGATTATACTTGTGTAATCTCCCATGGTGCCAATCCCAAAAAAACTCACATCTTTGGTGACTGCATTTTGGAATGTCACTCTGAGGATGTGAACAATTTTGGTAAGAATGTGGAAGAGGAAATTGGATTTGCCCACCCGGGTTCGAGCTTGGAGAATTTTGGTCACTACCCTTCAGACAATTTCCTGAGCTTCTGTTACTATTGTAACAAGAAATTGGAAGAGGGCAAAGATATATACATATACAGGGGTGAGAAAGCATTTTGCAGTTTGAGTTGCCGGTCGGAGGAAATTTTGATTGATGAGGAGTTGGAAAAATGCAATGACCAGTCTTCTGGGAAACCTCTCGAGTCGAATGAGGAACTTTTTGAAACTGGCTTGCTTGCCGATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

384

Amino Acids

41.57

Weight (kDa)

5.21

Isoelectric Point (pI)

60.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11460
fragaria_vesca	FvH4_2g30270 FvH4_2g30270 FvH4_2g30270
malus_domestica	MD08G1134900.v1.1 MD15G1113700.v1.1
prunus_persica	Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1
pyrus_communis	pycom03g20980 pycom08g11380 pycom15g10210
rosa_chinensis	RchiOBHm_Chr6g0312601
rosa_laevigata	RLG00000010312
rosa_multiflora	Rmu_sc0002859.1_g000009 Rmu_ssc0000412.1_g000001
rosa_roxburghii	Rroxscaffold_7G00156660
rosa_rugosa	Rorug06G0396800 Rorug06G0396900
rosa_samantha	Rh6AG514800 Rh6BG525200 Rh6CG530500 Rh6DG516900
rosa_wichuraiana	Rw6G044720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	785
AclWI	GGATC	2 cut(s)	690, 703
AcsI	RAATTY	4 cut(s)	291, 634, 913, 1047
AcuI	CTGAAG	1 cut(s)	915
AfiI	CCNNNNNNNGG	3 cut(s)	220, 351, 1042
AgsI	TTSAA	1 cut(s)	1127
AjnI	CCWGG	1 cut(s)	85
AjuI	GAANNNNNNNTTGG	2 cut(s)	864, 896
AluBI	AGCT	4 cut(s)	237, 751, 906, 948
AluI	AGCT	4 cut(s)	237, 751, 906, 948
Alw26I	GTCTC	1 cut(s)	732
AlwI	GGATC	2 cut(s)	690, 703
AlwNI	CAGNNNCTG	1 cut(s)	518
Ama87I	CYCGRG	2 cut(s)	895, 1103
ApeKI	GCWGC	3 cut(s)	26, 29, 226
ApoI	RAATTY	4 cut(s)	291, 634, 913, 1047
AseI	ATTAAT	1 cut(s)	357
Asp700I	GAANNNNTTC	1 cut(s)	293
AspS9I	GGNCC	4 cut(s)	198, 207, 341, 540
AsuC2I	CCSGG	4 cut(s)	345, 629, 896, 897
AsuHPI	GGTGA	3 cut(s)	396, 827, 1019
AsuII	TTCGAA	1 cut(s)	492
AvaI	CYCGRG	2 cut(s)	895, 1103
AvaII	GGWCC	4 cut(s)	198, 207, 341, 540
BaeGI	GKGCMC	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	785
BanII	GRGCYC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	1080
BbvI	GCAGC	3 cut(s)	13, 16, 238
BccI	CCATC	4 cut(s)	212, 517, 654, 707
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BciT130I	CCWGG	1 cut(s)	87
BcnI	CCSGG	4 cut(s)	345, 629, 896, 897
BcoDI	GTCTC	1 cut(s)	732
BfaI	CTAG	3 cut(s)	158, 182, 708
BisI	GCNGC	3 cut(s)	27, 30, 227
BlsI	GCNGC	3 cut(s)	28, 31, 228
Bme1390I	CCNGG	5 cut(s)	87, 345, 629, 896, 897
Bme18I	GGWCC	4 cut(s)	198, 207, 341, 540
BmeT110I	CYCGRG	2 cut(s)	895, 1103
BmgT120I	GGNCC	4 cut(s)	198, 207, 341, 540
BmiI	GGNNCC	5 cut(s)	143, 200, 343, 697, 787
BmrFI	CCNGG	5 cut(s)	87, 345, 629, 896, 897
BmsI	GCATC	3 cut(s)	13, 121, 273
BpiI	GAAGAC	1 cut(s)	1080
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	944
Bpu14I	TTCGAA	1 cut(s)	492
BpuMI	CCSGG	4 cut(s)	345, 629, 896, 897
BsaI	GGTCTC	1 cut(s)	732
BsaJI	CCNNGG	3 cut(s)	203, 781, 895
BsaWI	WCCGGW	1 cut(s)	537
BsaXI	ACNNNNNCTCC	4 cut(s)	226, 256, 590, 620
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 351, 1042
Bse118I	RCCGGY	1 cut(s)	1035
Bse1I	ACTGG	3 cut(s)	697, 1084, 1135
Bse3DI	GCAATG	2 cut(s)	718, 1084
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	3 cut(s)	203, 781, 895
BseGI	GGATG	1 cut(s)	850
BseLI	CCNNNNNNNGG	3 cut(s)	220, 351, 1042
BseMI	GCAATG	2 cut(s)	718, 1084
BseMII	CTCAG	7 cut(s)	309, 323, 389, 510, 747, 831, 935
BseNI	ACTGG	3 cut(s)	697, 1084, 1135
BseRI	GAGGAG	3 cut(s)	144, 247, 1076
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	13, 16, 238
BseYI	CCCAGC	2 cut(s)	32, 237
Bsh1285I	CGRYCG	1 cut(s)	1040
BshNI	GGYRCC	1 cut(s)	785
BsiEI	CGRYCG	1 cut(s)	1040
BsiHKCI	CYCGRG	2 cut(s)	895, 1103
BsiSI	CCGG	5 cut(s)	345, 538, 629, 896, 1036
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	3 cut(s)	220, 351, 1042
BsmAI	GTCTC	1 cut(s)	732
BsmFI	GGGAC	1 cut(s)	184
Bso31I	GGTCTC	1 cut(s)	732
BsoBI	CYCGRG	2 cut(s)	895, 1103
Bsp119I	TTCGAA	1 cut(s)	492
Bsp1286I	GDGCHC	2 cut(s)	54, 146
Bsp143I	GATC	1 cut(s)	695
Bsp19I	CCATGG	1 cut(s)	781
BspCNI	CTCAG	7 cut(s)	310, 322, 388, 511, 748, 832, 936
BspLI	GGNNCC	5 cut(s)	143, 200, 343, 697, 787
BspPI	GGATC	2 cut(s)	690, 703
BspT104I	TTCGAA	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	785
BspTNI	GGTCTC	1 cut(s)	732
BsrDI	GCAATG	2 cut(s)	718, 1084
BsrFI	RCCGGY	1 cut(s)	1035
BsrI	ACTGG	3 cut(s)	697, 1084, 1135
BssAI	RCCGGY	1 cut(s)	1035
BssECI	CCNNGG	3 cut(s)	203, 781, 895
BssMI	GATC	1 cut(s)	695
BssT1I	CCWWGG	2 cut(s)	203, 781
Bst2UI	CCWGG	1 cut(s)	87
Bst6I	CTCTTC	2 cut(s)	867, 972
BstBI	TTCGAA	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	1136, 1140
BstDEI	CTNAG	8 cut(s)	309, 318, 375, 420, 519, 756, 840, 944
BstDSI	CCRYGG	1 cut(s)	781
BstEII	GGTNACC	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	850
BstKTI	GATC	1 cut(s)	698
BstMAI	GTCTC	1 cut(s)	732
BstMBI	GATC	1 cut(s)	695
BstMCI	CGRYCG	1 cut(s)	1040
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNI	CCWGG	1 cut(s)	87
BstPI	GGTNACC	1 cut(s)	185
BstSCI	CCNGG	5 cut(s)	85, 343, 627, 894, 895
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	13, 16, 238
BstV2I	GAAGAC	1 cut(s)	1080
BstX2I	RGATCY	1 cut(s)	695
BstXI	CCANNNNNNTGG	1 cut(s)	1091
BstYI	RGATCY	1 cut(s)	695
BtgI	CCRYGG	1 cut(s)	781
BtsCI	GGATG	1 cut(s)	850
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	2 cut(s)	1136, 1140
CaiI	CAGNNNCTG	1 cut(s)	518
Cfr10I	RCCGGY	1 cut(s)	1035
Cfr13I	GGNCC	4 cut(s)	198, 207, 341, 540
Cfr9I	CCCGGG	1 cut(s)	895
CviAII	CATG	2 cut(s)	215, 782
DdeI	CTNAG	8 cut(s)	309, 318, 375, 420, 519, 756, 840, 944
DpnI	GATC	1 cut(s)	697
DpnII	GATC	1 cut(s)	695
Eam1104I	CTCTTC	2 cut(s)	867, 972
EarI	CTCTTC	2 cut(s)	867, 972
Eco130I	CCWWGG	2 cut(s)	203, 781
Eco24I	GRGCYC	1 cut(s)	146
Eco31I	GGTCTC	1 cut(s)	732
Eco47I	GGWCC	4 cut(s)	198, 207, 341, 540
Eco57I	CTGAAG	1 cut(s)	915
Eco88I	CYCGRG	2 cut(s)	895, 1103
Eco91I	GGTNACC	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	198
EcoO65I	GGTNACC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	2 cut(s)	203, 781
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	2 cut(s)	203, 781
FaeI	CATG	2 cut(s)	218, 785
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	214, 781
Fnu4HI	GCNGC	3 cut(s)	27, 30, 227
FokI	GGATG	1 cut(s)	857
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	3 cut(s)	27, 30, 227
FspBI	CTAG	3 cut(s)	158, 182, 708
GluI	GCNGC	3 cut(s)	27, 30, 227
GsaI	CCCAGC	2 cut(s)	36, 241
GsuI	CTGGAG	1 cut(s)	636
HapII	CCGG	5 cut(s)	345, 538, 629, 896, 1036
Hin1II	CATG	2 cut(s)	218, 785
HinfI	GANTC	6 cut(s)	106, 272, 521, 554, 704, 1106
HpaII	CCGG	5 cut(s)	345, 538, 629, 896, 1036
HphI	GGTGA	3 cut(s)	396, 827, 1019
Hpy166II	GTNNAC	1 cut(s)	850
Hpy188III	TCNNGA	7 cut(s)	158, 298, 529, 582, 615, 943, 1103
Hpy8I	GTNNAC	1 cut(s)	850
HpyAV	CCTTC	2 cut(s)	463, 939
HpyCH4V	TGCA	5 cut(s)	134, 431, 822, 1023, 1077
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	8 cut(s)	309, 318, 375, 420, 519, 756, 840, 944
Hsp92II	CATG	2 cut(s)	218, 785
Kzo9I	GATC	1 cut(s)	695
LmnI	GCTCC	2 cut(s)	141, 234
Lsp1109I	GCAGC	3 cut(s)	13, 16, 238
LweI	GCATC	3 cut(s)	13, 121, 273
MaeI	CTAG	3 cut(s)	158, 182, 708
MaeIII	GTNAC	6 cut(s)	185, 815, 833, 920, 953, 962
MalI	GATC	1 cut(s)	697
MboI	GATC	1 cut(s)	695
MboII	GAAGA	3 cut(s)	884, 989, 1080
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	2 cut(s)	54, 146
MlyI	GAGTC	4 cut(s)	115, 530, 713, 1115
MmeI	TCCRAC	3 cut(s)	234, 1020, 1047
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	4 cut(s)	260, 357, 597, 638
MslI	CAYNNNNRTG	1 cut(s)	683
MspI	CCGG	5 cut(s)	345, 538, 629, 896, 1036
MspR9I	CCNGG	5 cut(s)	87, 345, 629, 896, 897
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	243
NciI	CCSGG	4 cut(s)	345, 629, 896, 897
NcoI	CCATGG	1 cut(s)	781
NdeII	GATC	1 cut(s)	695
NlaIII	CATG	2 cut(s)	218, 785
NlaIV	GGNNCC	5 cut(s)	143, 200, 343, 697, 787
NmuCI	GTSAC	3 cut(s)	815, 833, 920
NspV	TTCGAA	1 cut(s)	492
PaeR7I	CTCGAG	1 cut(s)	1103
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	272, 554
PkrI	GCNGC	3 cut(s)	28, 31, 228
PleI	GAGTC	4 cut(s)	114, 529, 712, 1114
PpsI	GAGTC	4 cut(s)	114, 529, 712, 1114
PpuMI	RGGWCCY	1 cut(s)	198
PshBI	ATTAAT	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	85
PspEI	GGTNACC	1 cut(s)	185
PspFI	CCCAGC	2 cut(s)	32, 237
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	5 cut(s)	143, 200, 343, 697, 787
PspPI	GGNCC	4 cut(s)	198, 207, 341, 540
PspPPI	RGGWCCY	1 cut(s)	198
PstNI	CAGNNNCTG	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	695
RseI	CAYNNNNRTG	1 cut(s)	683
SaqAI	TTAA	4 cut(s)	260, 357, 597, 638
SatI	GCNGC	3 cut(s)	27, 30, 227
Sau3AI	GATC	1 cut(s)	695
Sau96I	GGNCC	4 cut(s)	198, 207, 341, 540
SchI	GAGTC	4 cut(s)	115, 530, 713, 1115
ScrFI	CCNGG	5 cut(s)	87, 345, 629, 896, 897
SduI	GDGCHC	2 cut(s)	54, 146
SfaNI	GCATC	3 cut(s)	13, 121, 273
Sfr274I	CTCGAG	1 cut(s)	1103
SfuI	TTCGAA	1 cut(s)	492
SinI	GGWCC	4 cut(s)	198, 207, 341, 540
SlaI	CTCGAG	1 cut(s)	1103
SmaI	CCCGGG	1 cut(s)	897
SmiMI	CAYNNNNRTG	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	1103
SmoI	CTYRAG	1 cut(s)	1103
SspMI	CTAG	3 cut(s)	158, 182, 708
StyD4I	CCNGG	5 cut(s)	85, 343, 627, 894, 895
StyI	CCWWGG	2 cut(s)	203, 781
TaqI	TCGA	6 cut(s)	492, 572, 702, 902, 1104, 1109
TfiI	GAWTC	2 cut(s)	272, 554
Tru1I	TTAA	4 cut(s)	260, 357, 597, 638
Tru9I	TTAA	4 cut(s)	260, 357, 597, 638
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	3 cut(s)	815, 833, 920
TseI	GCWGC	3 cut(s)	26, 29, 226
Tsp45I	GTSAC	3 cut(s)	815, 833, 920
TspDTI	ATGAA	2 cut(s)	537, 701
TspMI	CCCGGG	1 cut(s)	895
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	4 cut(s)	198, 207, 341, 540
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	4 cut(s)	291, 634, 913, 1047
XbaI	TCTAGA	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	2 cut(s)	653, 689
XhoI	CTCGAG	1 cut(s)	1103
XmaI	CCCGGG	1 cut(s)	895
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	3 cut(s)	158, 182, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.