Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006492

Physical Location & Seq

Genomic Coordinates Forward (+)

6684438 .. 6685108

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGTCATCTGCCAATTTCTGATGCTGCCGCTGGGTCTGATGTTTTGGGGCACAACCCTAAAAGCAGCTCTTTTTTCAGTGTTCCTGGTCTGTTTGTAGGGTTGAGTCCTAAGGGTTTATCAGATTGTGATGCAGTTAGAAGCCCAACTTCTCCTCTGGATTTTAGGGTTTTTTCCAATCTAGGTAACCCCTATAGGTCACCAAGGTCCAACCATGATGGGGGACAGCAGAGGAGCTGGGGTAGCAGTAAAGTAGGATTAAGCATCATAGATTCTCTTGATGATGTGAAATCTTCCGGGAGAGTTCCTCGTTCATCGGAGAGTAAGAACATTCTTTTTGGACCTGGAATGAGGATTAATAAAACCCCAAAGCCTCAGTCCAATGTCAAGCCTTTCGATTCTTCACCAAAATCTCTGCCTAAGAACTATGCAATTTTCCCTCATTCCAAAACCAAATCTCCCTTACAGAAGGGTAGTTCTGATGTTCTTTTTGAAATCGGAGAACCCCCATCAGAACCTGAGTCATTCGGGAAAATCCGGTCCTCTTCATTAGATTCCGGTAGATTCCGGAATTTTTTGTCCGGAAAATTTAACCACCCATCAATTCATTGGAGGAAGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

208

Amino Acids

22.41

Weight (kDa)

10.0

Isoelectric Point (pI)

68.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11460
fragaria_vesca	FvH4_2g30270 FvH4_2g30270 FvH4_2g30270
malus_domestica	MD08G1134900.v1.1 MD15G1113700.v1.1
prunus_persica	Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1
pyrus_communis	pycom03g20980 pycom08g11380 pycom15g10210
rosa_chinensis	RchiOBHm_Chr6g0312601
rosa_laevigata	RLG00000010312
rosa_multiflora	Rmu_sc0002859.1_g000009 Rmu_ssc0000412.1_g000001
rosa_roxburghii	Rroxscaffold_7G00156660
rosa_rugosa	Rorug06G0396800 Rorug06G0396900
rosa_samantha	Rh6AG514800 Rh6BG525200 Rh6CG530500 Rh6DG516900
rosa_wichuraiana	Rw6G044720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	567, 581
AciI	CCGC	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	571, 587
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	494
AjnI	CCWGG	2 cut(s)	85, 343
AluBI	AGCT	2 cut(s)	69, 237
AluI	AGCT	2 cut(s)	69, 237
AlwNI	CAGNNNCTG	1 cut(s)	518
Aor13HI	TCCGGA	2 cut(s)	567, 581
ApeKI	GCWGC	2 cut(s)	26, 66
ApoI	RAATTY	2 cut(s)	571, 587
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AseI	ATTAAT	1 cut(s)	357
AspS9I	GGNCC	3 cut(s)	207, 341, 540
AsuC2I	CCSGG	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	192, 396
AvaII	GGWCC	3 cut(s)	207, 341, 540
AxyI	CCTNAGG	1 cut(s)	111
BaeGI	GKGCMC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	13, 78
BccI	CCATC	3 cut(s)	212, 517, 607
BciT130I	CCWGG	2 cut(s)	87, 345
BcnI	CCSGG	1 cut(s)	298
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	193
BisI	GCNGC	3 cut(s)	27, 30, 67
BlsI	GCNGC	3 cut(s)	28, 31, 68
Bme1390I	CCNGG	3 cut(s)	87, 298, 345
Bme18I	GGWCC	3 cut(s)	207, 341, 540
BmgT120I	GGNCC	3 cut(s)	207, 341, 540
BmrFI	CCNGG	3 cut(s)	87, 298, 345
BmsI	GCATC	3 cut(s)	13, 121, 273
BplI	GAGNNNNNCTC	2 cut(s)	292, 324
BpuMI	CCSGG	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	4 cut(s)	537, 557, 567, 581
BsaXI	ACNNNNNCTCC	4 cut(s)	226, 256, 442, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse21I	CCTNAGG	1 cut(s)	111
BseAI	TCCGGA	2 cut(s)	567, 581
BseBI	CCWGG	2 cut(s)	87, 345
BseDI	CCNNGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMII	CTCAG	2 cut(s)	389, 510
BseRI	GAGGAG	2 cut(s)	144, 247
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	13, 78
BseYI	CCCAGC	2 cut(s)	32, 237
BsiSI	CCGG	5 cut(s)	297, 538, 558, 568, 582
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp13I	TCCGGA	2 cut(s)	567, 581
BspACI	CCGC	1 cut(s)	30
BspCNI	CTCAG	2 cut(s)	388, 511
BspEI	TCCGGA	2 cut(s)	567, 581
BssECI	CCNNGG	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	2 cut(s)	87, 345
Bst6I	CTCTTC	1 cut(s)	550
BstDEI	CTNAG	4 cut(s)	111, 375, 420, 519
BstEII	GGTNACC	2 cut(s)	185, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNI	CCWGG	2 cut(s)	87, 345
BstPI	GGTNACC	2 cut(s)	185, 198
BstSCI	CCNGG	3 cut(s)	85, 296, 343
BstSFI	CTRYAG	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	13, 78
Bsu36I	CCTNAGG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	85
CaiI	CAGNNNCTG	1 cut(s)	518
Cfr13I	GGNCC	3 cut(s)	207, 341, 540
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	6 cut(s)	69, 144, 237, 373, 391, 619
CviKI_1	RGCY	6 cut(s)	69, 144, 237, 373, 391, 619
DdeI	CTNAG	4 cut(s)	111, 375, 420, 519
Eam1104I	CTCTTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	550
Eco130I	CCWWGG	1 cut(s)	203
Eco47I	GGWCC	3 cut(s)	207, 341, 540
Eco81I	CCTNAGG	1 cut(s)	111
Eco91I	GGTNACC	2 cut(s)	185, 198
EcoO65I	GGTNACC	2 cut(s)	185, 198
EcoRII	CCWGG	2 cut(s)	85, 343
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	1 cut(s)	218
FaiI	YATR	4 cut(s)	195, 216, 269, 429
FalI	AAGNNNNNCTT	4 cut(s)	55, 87, 133, 165
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	1 cut(s)	214
Fnu4HI	GCNGC	3 cut(s)	27, 30, 67
Fsp4HI	GCNGC	3 cut(s)	27, 30, 67
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	3 cut(s)	27, 30, 67
GsaI	CCCAGC	2 cut(s)	36, 241
HapII	CCGG	5 cut(s)	297, 538, 558, 568, 582
Hin1II	CATG	1 cut(s)	218
HinfI	GANTC	6 cut(s)	106, 272, 398, 521, 554, 564
HpaII	CCGG	5 cut(s)	297, 538, 558, 568, 582
HphI	GGTGA	2 cut(s)	192, 396
Hpy188I	TCNGA	7 cut(s)	22, 40, 124, 319, 481, 500, 514
Hpy188III	TCNNGA	5 cut(s)	158, 278, 529, 568, 582
HpyAV	CCTTC	1 cut(s)	463
HpyCH4V	TGCA	2 cut(s)	134, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	4 cut(s)	111, 375, 420, 519
Hsp92II	CATG	1 cut(s)	218
Kpn2I	TCCGGA	2 cut(s)	567, 581
LmnI	GCTCC	1 cut(s)	234
Lsp1109I	GCAGC	2 cut(s)	13, 78
LweI	GCATC	3 cut(s)	13, 121, 273
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	185, 198
MboII	GAAGA	3 cut(s)	285, 393, 537
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	5 cut(s)	15, 432, 571, 587, 603
MlyI	GAGTC	2 cut(s)	115, 530
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	8 cut(s)	165, 225, 318, 345, 384, 450, 553, 606
MroI	TCCGGA	2 cut(s)	567, 581
MseI	TTAA	3 cut(s)	260, 357, 591
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	5 cut(s)	297, 538, 558, 568, 582
MspR9I	CCNGG	3 cut(s)	87, 298, 345
MvaI	CCWGG	2 cut(s)	87, 345
MwoI	GCNNNNNNNGC	1 cut(s)	243
NciI	CCSGG	1 cut(s)	298
NlaIII	CATG	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	198
PfeI	GAWTC	4 cut(s)	272, 398, 554, 564
PfoI	TCCNGGA	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	28, 31, 68
PleI	GAGTC	2 cut(s)	114, 529
PpsI	GAGTC	2 cut(s)	114, 529
PshBI	ATTAAT	1 cut(s)	357
Psp6I	CCWGG	2 cut(s)	85, 343
PspEI	GGTNACC	2 cut(s)	185, 198
PspFI	CCCAGC	2 cut(s)	32, 237
PspGI	CCWGG	2 cut(s)	85, 343
PspPI	GGNCC	3 cut(s)	207, 341, 540
PstNI	CAGNNNCTG	1 cut(s)	518
SaqAI	TTAA	3 cut(s)	260, 357, 591
SatI	GCNGC	3 cut(s)	27, 30, 67
Sau96I	GGNCC	3 cut(s)	207, 341, 540
SchI	GAGTC	2 cut(s)	115, 530
ScrFI	CCNGG	3 cut(s)	87, 298, 345
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	7 cut(s)	71, 187, 200, 209, 239, 346, 520
SfaNI	GCATC	3 cut(s)	13, 121, 273
SfcI	CTRYAG	1 cut(s)	193
SinI	GGWCC	3 cut(s)	207, 341, 540
Sse9I	AATT	5 cut(s)	15, 432, 571, 587, 603
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	3 cut(s)	85, 296, 343
StyI	CCWWGG	1 cut(s)	203
TaqI	TCGA	1 cut(s)	396
TasI	AATT	5 cut(s)	15, 432, 571, 587, 603
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	4 cut(s)	272, 398, 554, 564
Tru1I	TTAA	3 cut(s)	260, 357, 591
Tru9I	TTAA	3 cut(s)	260, 357, 591
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	2 cut(s)	26, 66
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	3 cut(s)	303, 537, 596
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	3 cut(s)	207, 341, 540
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	2 cut(s)	571, 587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	606
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.