Rmu_ssc0000412.1_g000001

zinc-finger of the FCS-type, C2-C2

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000412.1
Physical Location & Seq
Forward (+)
16127 .. 19100
2974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000412.1_g000001.1.cds

Sequence Viewer

Length: 1533 bp
atgctgaggaagaggaccaggtcaactcagaaggatcaagatcaacaccaaatggggcatctgccgatttctaatgctggctctgagtcacatttccggtctgatgttcttggaccgaatctgaaaagcaactcttttttcactgcccctggtctgtttgtggggttgagtcctataggtttaacagattctgattcagttaggagcccaacttcgcctctagatttcagggtgttttcaaatctaggcagcccctttaggtccccaggatcacctcttgatgggcataagaggagctggggtagtagtaaagtaggcttaagcatcatcgactctcttgatgatgatgtcaagttttctgggaaagttcccagatcatcagagagtaagaacattctttttggacctgggatgaggactaaaacccgggattctcaatccaataccagttctattgggtcacctagatctctgcctaagaattatgcaattttccctcattccaaagtcaagtctcctttacaagagagtagctctgatgttgtttttgaaattggagaaacaccatcagaacctgagtcatttggaaaaattacgtcttgctcactggattctgctaggactttttcaaccctatcaggtttaagcaagcttaaccccaattccactactggaaatttttgcttggagaatttaaccaacccacaatttattggaggaagccccaactcaaccacgcaaatgactgttggatccattggttctggcaatgggtttgttgggtctctctcagctagtgagattgagctttctgaggattatacttgtgtaatttctcatggtgccaatcccaaaacaactcatatctttggtgactgcgttttgggatgccactctgaagatttgagcaattttggtaagaatgagaagatggaaattggatcacctcagctggctacgagcttggggagttttgttcagtacccctcaaacaatttcctgagcttctgccactactgtaacaaagaactggaagaggggaaagacattttcatatacaggggtgagaaagcattttgcagtttgagttgtcgctctgtggagattttgaatgatgaggaattggagcagtgcgatgacgaatcttctgaaaagcctctcgacgggtcttgctttagcggcggcgtctcctccgtcgacttagaccaaatcggatatgtgcagcggctttgggagggcagtcaggtcgaggcttggaggcagattttattgctggcgggatttggtgagcacccacaccaggctccgtcgttttcttcccatggcggaagggcaaggtcgaccgccgaaagtgttggtagggctaaggccggagttgaagaagcagtggctccggcgagcctactaggatttcgatgctctctgatccaaactcagagtgagggtagtgggagttgggctgggctgttgggcttaagtccactttccctcctctttctgatttgggctgaagttgggccgggcttttggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

510

Amino Acids

54.78

Weight (kDa)

5.46

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 842
AccI GTMKAC 2 cut(s) 1197, 1340
AciI CCGC 6 cut(s) 1179, 1182, 1225, 1277, 1326, 1344
AclWI GGATC 6 cut(s) 42, 277, 747, 760, 949, 1420
AcsI RAATTY 2 cut(s) 676, 691
AcuI CTGAAG 2 cut(s) 918, 1530
AcyI GRCGYC 1 cut(s) 1185
AfaI GTAC 1 cut(s) 983
AfiI CCNNNNNNNGG 3 cut(s) 281, 1163, 1300
AflII CTTAAG 2 cut(s) 319, 1474
AgsI TTSAA 5 cut(s) 240, 551, 630, 1111, 1379
AjnI CCWGG 5 cut(s) 17, 148, 265, 406, 1299
AluBI AGCT 8 cut(s) 297, 534, 652, 794, 808, 952, 963, 1005
AluI AGCT 8 cut(s) 297, 534, 652, 794, 808, 952, 963, 1005
Alw21I GWGCWC 1 cut(s) 1293
Alw26I GTCTC 3 cut(s) 519, 789, 1192
AlwI GGATC 6 cut(s) 42, 277, 747, 760, 949, 1420
AlwNI CAGNNNCTG 2 cut(s) 191, 575
Ama87I CYCGRG 1 cut(s) 426
AoxI GGCC 2 cut(s) 1368, 1517
ApeKI GCWGC 2 cut(s) 249, 1222
ApoI RAATTY 2 cut(s) 676, 691
AspS9I GGNCC 5 cut(s) 15, 113, 261, 404, 1517
AsuC2I CCSGG 3 cut(s) 427, 428, 1521
AsuHPI GGTGA 6 cut(s) 264, 453, 884, 936, 1076, 1298
AvaI CYCGRG 1 cut(s) 426
AvaII GGWCC 4 cut(s) 15, 113, 261, 404
BamHI GGATCC 1 cut(s) 752
BanI GGYRCC 1 cut(s) 842
BanII GRGCYC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 1293
BbvCI CCTCAGC 2 cut(s) 5, 948
BbvI GCAGC 2 cut(s) 261, 1234
BccI CCATC 3 cut(s) 275, 574, 925
BcgI CGANNNNNNTGC 2 cut(s) 1228, 1262
BciT130I CCWGG 5 cut(s) 19, 150, 267, 408, 1301
BcnI CCSGG 3 cut(s) 427, 428, 1521
BcoDI GTCTC 3 cut(s) 519, 789, 1192
BfaI CTAG 6 cut(s) 221, 245, 465, 618, 795, 1406
BfmI CTRYAG 1 cut(s) 174
BfrI CTTAAG 2 cut(s) 319, 1474
BglII AGATCT 1 cut(s) 467
BisI GCNGC 5 cut(s) 250, 1180, 1183, 1223, 1226
BlsI GCNGC 5 cut(s) 251, 1181, 1184, 1224, 1227
Bme1390I CCNGG 8 cut(s) 19, 150, 267, 408, 427, 428, 1301, 1521
Bme18I GGWCC 4 cut(s) 15, 113, 261, 404
BmeT110I CYCGRG 1 cut(s) 426
BmgT120I GGNCC 5 cut(s) 15, 113, 261, 404, 1517
BmiI GGNNCC 6 cut(s) 206, 263, 754, 844, 1305, 1392
BmrFI CCNGG 8 cut(s) 19, 150, 267, 408, 427, 428, 1301, 1521
BmsI GCATC 4 cut(s) 67, 333, 878, 1406
BplI GAGNNNNNCTC 2 cut(s) 518, 550
Bpu10I CCTNAGC 4 cut(s) 5, 948, 1001, 1365
BpuMI CCSGG 3 cut(s) 427, 428, 1521
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 1185
BsaI GGTCTC 1 cut(s) 789
BsaJI CCNNGG 5 cut(s) 148, 265, 407, 426, 1321
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 4 cut(s) 286, 316, 1473, 1503
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 1163, 1300
Bse1I ACTGG 4 cut(s) 447, 612, 676, 1035
Bse3DI GCAATG 1 cut(s) 775
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 5 cut(s) 19, 150, 267, 408, 1301
BseDI CCNNGG 5 cut(s) 148, 265, 407, 426, 1321
BseGI GGATG 2 cut(s) 417, 893
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 3 cut(s) 281, 1163, 1300
BseMI GCAATG 1 cut(s) 775
BseMII CTCAG 8 cut(s) 41, 75, 567, 804, 804, 962, 992, 1448
BseNI ACTGG 4 cut(s) 447, 612, 676, 1035
BseRI GAGGAG 3 cut(s) 307, 1180, 1481
BseXI GCAGC 2 cut(s) 261, 1234
BseYI CCCAGC 2 cut(s) 297, 1460
BsgI GTGCAG 1 cut(s) 1241
Bsh1285I CGRYCG 1 cut(s) 1344
BshFI GGCC 2 cut(s) 1370, 1519
BshNI GGYRCC 1 cut(s) 842
BsiEI CGRYCG 1 cut(s) 1344
BsiHKAI GWGCWC 1 cut(s) 1293
BsiHKCI CYCGRG 1 cut(s) 426
BsiSI CCGG 5 cut(s) 97, 427, 1371, 1394, 1520
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 3 cut(s) 281, 1163, 1300
BsmAI GTCTC 3 cut(s) 519, 789, 1192
BsmBI CGTCTC 1 cut(s) 1192
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 2 cut(s) 1370, 1519
Bso31I GGTCTC 1 cut(s) 789
BsoBI CYCGRG 1 cut(s) 426
Bsp1286I GDGCHC 2 cut(s) 209, 1293
Bsp143I GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
Bsp19I CCATGG 1 cut(s) 1321
BspACI CCGC 6 cut(s) 1179, 1182, 1225, 1277, 1326, 1344
BspANI GGCC 2 cut(s) 1370, 1519
BspCNI CTCAG 8 cut(s) 40, 76, 568, 803, 805, 961, 993, 1447
BspLI GGNNCC 6 cut(s) 206, 263, 754, 844, 1305, 1392
BspPI GGATC 6 cut(s) 42, 277, 747, 760, 949, 1420
BspT107I GGYRCC 1 cut(s) 842
BspTI CTTAAG 2 cut(s) 319, 1474
BspTNI GGTCTC 1 cut(s) 789
BsrDI GCAATG 1 cut(s) 775
BsrI ACTGG 4 cut(s) 447, 612, 676, 1035
BssECI CCNNGG 5 cut(s) 148, 265, 407, 426, 1321
BssMI GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
BssNI GRCGYC 1 cut(s) 1185
BssT1I CCWWGG 1 cut(s) 1321
Bst2UI CCWGG 5 cut(s) 19, 150, 267, 408, 1301
Bst4CI ACNGT 2 cut(s) 748, 1019
Bst6I CTCTTC 2 cut(s) 5, 1029
BstACI GRCGYC 1 cut(s) 1185
BstAFI CTTAAG 2 cut(s) 319, 1474
BstC8I GCNNGC 5 cut(s) 79, 650, 954, 1275, 1399
BstDSI CCRYGG 1 cut(s) 1321
BstEII GGTNACC 1 cut(s) 459
BstF5I GGATG 2 cut(s) 417, 893
BstKTI GATC 8 cut(s) 37, 43, 272, 377, 470, 755, 944, 1428
BstMAI GTCTC 3 cut(s) 519, 789, 1192
BstMBI GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
BstMCI CGRYCG 1 cut(s) 1344
BstMWI GCNNNNNNNGC 1 cut(s) 1179
BstNI CCWGG 5 cut(s) 19, 150, 267, 408, 1301
BstPI GGTNACC 1 cut(s) 459
BstSCI CCNGG 8 cut(s) 17, 148, 265, 406, 425, 426, 1299, 1519
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 261, 1234
BstX2I RGATCY 2 cut(s) 467, 752
BstYI RGATCY 2 cut(s) 467, 752
BsuRI GGCC 2 cut(s) 1370, 1519
BtgI CCRYGG 1 cut(s) 1321
BtgZI GCGATG 1 cut(s) 1149
BtsCI GGATG 2 cut(s) 417, 893
BtsI GCAGTG 3 cut(s) 141, 1136, 1392
BtsIMutI CAGTG 4 cut(s) 141, 605, 1136, 1392
Cac8I GCNNGC 5 cut(s) 79, 650, 954, 1275, 1399
CaiI CAGNNNCTG 2 cut(s) 191, 575
Cfr13I GGNCC 5 cut(s) 15, 113, 261, 404, 1517
Cfr9I CCCGGG 1 cut(s) 426
CseI GACGC 1 cut(s) 1174
CsiI ACCWGGT 1 cut(s) 17
Csp6I GTAC 1 cut(s) 982
CviAII CATG 2 cut(s) 839, 1322
CviQI GTAC 1 cut(s) 982
DpnI GATC 8 cut(s) 36, 42, 271, 376, 469, 754, 943, 1427
DpnII GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
Eam1104I CTCTTC 2 cut(s) 5, 1029
EarI CTCTTC 2 cut(s) 5, 1029
EciI GGCGGA 1 cut(s) 1341
Eco130I CCWWGG 1 cut(s) 1321
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 789
Eco47I GGWCC 4 cut(s) 15, 113, 261, 404
Eco57I CTGAAG 2 cut(s) 918, 1530
Eco88I CYCGRG 1 cut(s) 426
Eco91I GGTNACC 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 261
EcoO65I GGTNACC 1 cut(s) 459
EcoRII CCWGG 5 cut(s) 17, 148, 265, 406, 1299
EcoT14I CCWWGG 1 cut(s) 1321
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 1321
Esp3I CGTCTC 1 cut(s) 1192
FaeI CATG 2 cut(s) 842, 1325
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FaqI GGGAC 1 cut(s) 247
FatI CATG 2 cut(s) 838, 1321
FauI CCCGC 1 cut(s) 1270
FblI GTMKAC 2 cut(s) 1197, 1340
Fnu4HI GCNGC 5 cut(s) 250, 1180, 1183, 1223, 1226
FokI GGATG 2 cut(s) 424, 900
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 5 cut(s) 250, 1180, 1183, 1223, 1226
FspBI CTAG 6 cut(s) 221, 245, 465, 618, 795, 1406
GluI GCNGC 5 cut(s) 250, 1180, 1183, 1223, 1226
GsaI CCCAGC 2 cut(s) 301, 1464
HaeIII GGCC 2 cut(s) 1370, 1519
HapII CCGG 5 cut(s) 97, 427, 1371, 1394, 1520
HgaI GACGC 1 cut(s) 1174
Hin1I GRCGYC 1 cut(s) 1185
Hin1II CATG 2 cut(s) 842, 1325
HincII GTYRAC 3 cut(s) 24, 1198, 1341
HindII GTYRAC 3 cut(s) 24, 1198, 1341
HindIII AAGCTT 1 cut(s) 650
HpaII CCGG 5 cut(s) 97, 427, 1371, 1394, 1520
HphI GGTGA 6 cut(s) 264, 453, 884, 936, 1076, 1298
Hpy166II GTNNAC 4 cut(s) 24, 1198, 1341, 1481
Hpy188III TCNNGA 6 cut(s) 38, 221, 278, 338, 1000, 1160
Hpy8I GTNNAC 4 cut(s) 24, 1198, 1341, 1481
Hpy99I CGWCG 3 cut(s) 1166, 1199, 1312
HpyAV CCTTC 2 cut(s) 25, 1323
HpyCH4III ACNGT 2 cut(s) 748, 1019
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 3 cut(s) 488, 1080, 1222
HpyF10VI GCNNNNNNNGC 1 cut(s) 1179
HpySE526I ACGT 1 cut(s) 596
Hsp92I GRCGYC 1 cut(s) 1185
Hsp92II CATG 2 cut(s) 842, 1325
Kzo9I GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
LmnI GCTCC 5 cut(s) 204, 294, 1126, 1309, 1396
Lsp1109I GCAGC 2 cut(s) 261, 1234
LweI GCATC 4 cut(s) 67, 333, 878, 1406
MabI ACCWGGT 1 cut(s) 17
MaeI CTAG 6 cut(s) 221, 245, 465, 618, 795, 1406
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 4 cut(s) 87, 459, 872, 1019
MalI GATC 8 cut(s) 36, 42, 271, 376, 469, 754, 943, 1427
MboI GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
MboII GAAGA 7 cut(s) 22, 911, 940, 1046, 1137, 1308, 1391
MflI RGATCY 2 cut(s) 467, 752
MhlI GDGCHC 2 cut(s) 209, 1293
MlyI GAGTC 4 cut(s) 95, 178, 326, 587
MmeI TCCRAC 1 cut(s) 730
MseI TTAA 6 cut(s) 182, 320, 644, 654, 695, 1475
MslI CAYNNNNRTG 1 cut(s) 740
MspA1I CMGCKG 2 cut(s) 952, 1225
MspCI CTTAAG 2 cut(s) 319, 1474
MspI CCGG 5 cut(s) 97, 427, 1371, 1394, 1520
MspR9I CCNGG 8 cut(s) 19, 150, 267, 408, 427, 428, 1301, 1521
MvaI CCWGG 5 cut(s) 19, 150, 267, 408, 1301
MwoI GCNNNNNNNGC 1 cut(s) 1179
NciI CCSGG 3 cut(s) 427, 428, 1521
NcoI CCATGG 1 cut(s) 1321
NdeII GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
NlaIII CATG 2 cut(s) 842, 1325
NlaIV GGNNCC 6 cut(s) 206, 263, 754, 844, 1305, 1392
NmuCI GTSAC 3 cut(s) 87, 459, 872
PfeI GAWTC 6 cut(s) 118, 188, 194, 431, 611, 1142
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 5 cut(s) 251, 1181, 1184, 1224, 1227
PleI GAGTC 4 cut(s) 94, 177, 326, 586
PpsI GAGTC 4 cut(s) 94, 177, 326, 586
PpuMI RGGWCCY 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 5 cut(s) 17, 148, 265, 406, 1299
PspEI GGTNACC 1 cut(s) 459
PspFI CCCAGC 2 cut(s) 297, 1460
PspGI CCWGG 5 cut(s) 17, 148, 265, 406, 1299
PspN4I GGNNCC 6 cut(s) 206, 263, 754, 844, 1305, 1392
PspPI GGNCC 5 cut(s) 15, 113, 261, 404, 1517
PspPPI RGGWCCY 1 cut(s) 261
PstNI CAGNNNCTG 2 cut(s) 191, 575
PsuI RGATCY 2 cut(s) 467, 752
PsyI GACNNNGTC 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 1 cut(s) 983
RsaNI GTAC 1 cut(s) 982
RseI CAYNNNNRTG 1 cut(s) 740
SalI GTCGAC 2 cut(s) 1196, 1339
SaqAI TTAA 6 cut(s) 182, 320, 644, 654, 695, 1475
SatI GCNGC 5 cut(s) 250, 1180, 1183, 1223, 1226
Sau3AI GATC 8 cut(s) 34, 40, 269, 374, 467, 752, 941, 1425
Sau96I GGNCC 5 cut(s) 15, 113, 261, 404, 1517
SchI GAGTC 4 cut(s) 95, 178, 326, 587
ScrFI CCNGG 8 cut(s) 19, 150, 267, 408, 427, 428, 1301, 1521
SduI GDGCHC 2 cut(s) 209, 1293
SexAI ACCWGGT 1 cut(s) 17
SfaNI GCATC 4 cut(s) 67, 333, 878, 1406
SfcI CTRYAG 1 cut(s) 174
SinI GGWCC 4 cut(s) 15, 113, 261, 404
SmaI CCCGGG 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 2 cut(s) 319, 1474
SmoI CTYRAG 2 cut(s) 319, 1474
SsiI CCGC 6 cut(s) 1179, 1182, 1225, 1277, 1326, 1344
SspMI CTAG 6 cut(s) 221, 245, 465, 618, 795, 1406
StyD4I CCNGG 8 cut(s) 17, 148, 265, 406, 425, 426, 1299, 1519
StyI CCWWGG 1 cut(s) 1321
TaaI ACNGT 2 cut(s) 748, 1019
TaiI ACGT 1 cut(s) 599
TaqI TCGA 6 cut(s) 330, 1161, 1197, 1248, 1340, 1414
TaqII GACCGA 1 cut(s) 130
TauI GCSGC 3 cut(s) 1182, 1185, 1228
TfiI GAWTC 6 cut(s) 118, 188, 194, 431, 611, 1142
Tru1I TTAA 6 cut(s) 182, 320, 644, 654, 695, 1475
Tru9I TTAA 6 cut(s) 182, 320, 644, 654, 695, 1475
TscAI CASTG 4 cut(s) 148, 612, 1136, 1392
TseFI GTSAC 3 cut(s) 87, 459, 872
TseI GCWGC 2 cut(s) 249, 1222
Tsp45I GTSAC 3 cut(s) 87, 459, 872
TspDTI ATGAA 1 cut(s) 1042
TspGWI ACGGA 2 cut(s) 1183, 1296
TspMI CCCGGG 1 cut(s) 426
TspRI CASTG 4 cut(s) 148, 612, 1136, 1392
Tth111I GACNNNGTC 1 cut(s) 19
Vha464I CTTAAG 2 cut(s) 319, 1474
VpaK11BI GGWCC 4 cut(s) 15, 113, 261, 404
XapI RAATTY 2 cut(s) 676, 691
XbaI TCTAGA 1 cut(s) 220
XmaI CCCGGG 1 cut(s) 426
XmiI GTMKAC 2 cut(s) 1197, 1340
XspI CTAG 6 cut(s) 221, 245, 465, 618, 795, 1406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.