Rw6G044720

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006492
Physical Location & Seq
Forward (+)
67871375 .. 67872685
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G044720.1

Sequence Viewer

Length: 1218 bp
ATGCTGAGGAAGAGGACCAGGTCAACTCAGAAGGATCAAGATCAACACCAAATGGGGCATCTGCCGATTTCTAATGCTGGCTCTGAGTCACATTTCCGGTCTGATGTTCTTGGACCGAATCCGAAAAGCAACTCTTTTTTCACTGCCCCTGGTCTGTTTGTGGGATTGAGTCCTATAGGTTTAACAGATTCTGATTCAGTTAGGAGCCCAACTTCGCCTCTAGATTTCAGGGTGTTTTCAAATCTAGGCAGCCCCTTTAGGTCCCCAGGATCACCTCTTGATGGGCATAAGAGGAGCTGGGGTAGTAGTAAAGTAGGCTTAAGCATCATCGACTCTCTTGATGATGATGTCAAGTTTTCTGGGAAAGTTCCCAGATCATCAGAGAGTAAGAACATTCTTTTTGGACCTGGGATGAGGACTAAAACCCGAGATTCTCAATCCAATACCAGTTCTATTGGGTCACCTAGATCTCTGCCTAAGAATTATGCAATTTTCCCTCATTCCAAAGTCAAGTCTCCTTTACAAGAGAGTAGCTCTGATGTTGTTTTTGAAATTGGAGAAACACCATCAGAACCTGAGTCATTTGGAAAAATTACGTCTTGCTCACTGGATTCTGCTAGGACTTTTTCAACCCTATCAGGTTTAAGCAAGCTTAACCCCAATTCCACTACTGGAAATTTTTGCTTGGAGAATTTAACCAACCCACAATTTATTGGAGGAAGCCCCAACTCAACCACGCAAATGACTGTTGGATCCATTGGTTCTGGCAATGGGTTTGTTGGGTCTCTCTCAGCTAGTGAGATTGAGCTTTCTGAGGATTATACTTGTGTAATTTCTCATGGTGCCTATCCCAAAACAACTCATATCTTTGGTGACTGCGTTTTGGGATGCCACTCTGAAGATTTGAGCAATTTTGGTAAGAATGAGAAGATGGAAATTGGGTCACCTCAGCTGGCTACGAGCTTGGGGAGTTTTGTTCAGTACCCCGCAAACAATTTCCTGAGCTTCTGCCACTACTGTAACAAAGAACTGGAAGAGGGGAAAGACATTTTCATATACAGGGGTGAGAAAGCATTTTGCAGTTTGAGTTGTCGCTCTGTGGAGATTTTGAATGATGAGGAATTGGAGCAGTGCGATGACGAATCTTCTGAAAAGCCTCTCGAGTCAGATGATGGCAAGGAACTTTTTTTCGAAACTGGCCTCATTGCTGATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

405

Amino Acids

43.86

Weight (kDa)

5.23

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 327 - 374 1.3e-20 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 842
AciI CCGC 1 cut(s) 987
AclWI GGATC 4 cut(s) 42, 277, 747, 760
AcsI RAATTY 2 cut(s) 676, 691
AcuI CTGAAG 1 cut(s) 918
AfaI GTAC 1 cut(s) 983
AfiI CCNNNNNNNGG 1 cut(s) 281
AflII CTTAAG 1 cut(s) 319
AgsI TTSAA 4 cut(s) 240, 551, 630, 1111
AjnI CCWGG 4 cut(s) 17, 148, 265, 406
AluBI AGCT 8 cut(s) 297, 534, 652, 794, 808, 952, 963, 1005
AluI AGCT 8 cut(s) 297, 534, 652, 794, 808, 952, 963, 1005
Alw26I GTCTC 2 cut(s) 519, 789
AlwI GGATC 4 cut(s) 42, 277, 747, 760
AlwNI CAGNNNCTG 2 cut(s) 191, 575
Ama87I CYCGRG 2 cut(s) 426, 1160
AoxI GGCC 1 cut(s) 1198
ApeKI GCWGC 1 cut(s) 249
ApoI RAATTY 2 cut(s) 676, 691
AspS9I GGNCC 4 cut(s) 15, 113, 261, 404
AsuHPI GGTGA 5 cut(s) 264, 453, 884, 936, 1076
AsuII TTCGAA 1 cut(s) 1191
AvaI CYCGRG 2 cut(s) 426, 1160
AvaII GGWCC 4 cut(s) 15, 113, 261, 404
BamHI GGATCC 1 cut(s) 752
BanI GGYRCC 1 cut(s) 842
BanII GRGCYC 1 cut(s) 209
BbvCI CCTCAGC 2 cut(s) 5, 948
BbvI GCAGC 1 cut(s) 261
BccI CCATC 4 cut(s) 275, 574, 925, 1166
BciT130I CCWGG 4 cut(s) 19, 150, 267, 408
BcoDI GTCTC 2 cut(s) 519, 789
BfaI CTAG 5 cut(s) 221, 245, 465, 618, 795
BfmI CTRYAG 1 cut(s) 174
BfrI CTTAAG 1 cut(s) 319
BglII AGATCT 1 cut(s) 467
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 4 cut(s) 19, 150, 267, 408
Bme18I GGWCC 4 cut(s) 15, 113, 261, 404
BmeT110I CYCGRG 2 cut(s) 426, 1160
BmgT120I GGNCC 4 cut(s) 15, 113, 261, 404
BmiI GGNNCC 4 cut(s) 206, 263, 754, 844
BmrFI CCNGG 4 cut(s) 19, 150, 267, 408
BmsI GCATC 3 cut(s) 67, 333, 878
BplI GAGNNNNNCTC 2 cut(s) 518, 550
Bpu10I CCTNAGC 3 cut(s) 5, 948, 1001
Bpu14I TTCGAA 1 cut(s) 1191
BsaBI GATNNNNATC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 789
BsaJI CCNNGG 3 cut(s) 148, 265, 407
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 5 cut(s) 447, 612, 676, 1035, 1201
Bse3DI GCAATG 2 cut(s) 775, 1203
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 4 cut(s) 19, 150, 267, 408
BseDI CCNNGG 3 cut(s) 148, 265, 407
BseGI GGATG 2 cut(s) 417, 893
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 2 cut(s) 775, 1203
BseMII CTCAG 7 cut(s) 41, 75, 567, 804, 804, 962, 992
BseNI ACTGG 5 cut(s) 447, 612, 676, 1035, 1201
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 297
BshFI GGCC 1 cut(s) 1200
BshNI GGYRCC 1 cut(s) 842
BsiHKCI CYCGRG 2 cut(s) 426, 1160
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 2 cut(s) 519, 789
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 1 cut(s) 1200
Bso31I GGTCTC 1 cut(s) 789
BsoBI CYCGRG 2 cut(s) 426, 1160
Bsp119I TTCGAA 1 cut(s) 1191
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 6 cut(s) 34, 40, 269, 374, 467, 752
BspACI CCGC 1 cut(s) 987
BspANI GGCC 1 cut(s) 1200
BspCNI CTCAG 7 cut(s) 40, 76, 568, 803, 805, 961, 993
BspLI GGNNCC 4 cut(s) 206, 263, 754, 844
BspPI GGATC 4 cut(s) 42, 277, 747, 760
BspT104I TTCGAA 1 cut(s) 1191
BspT107I GGYRCC 1 cut(s) 842
BspTI CTTAAG 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 789
BsrDI GCAATG 2 cut(s) 775, 1203
BsrI ACTGG 5 cut(s) 447, 612, 676, 1035, 1201
BssECI CCNNGG 3 cut(s) 148, 265, 407
BssMI GATC 6 cut(s) 34, 40, 269, 374, 467, 752
Bst2UI CCWGG 4 cut(s) 19, 150, 267, 408
Bst4CI ACNGT 2 cut(s) 748, 1019
Bst6I CTCTTC 2 cut(s) 5, 1029
BstAFI CTTAAG 1 cut(s) 319
BstBI TTCGAA 1 cut(s) 1191
BstC8I GCNNGC 3 cut(s) 79, 650, 954
BstDEI CTNAG 9 cut(s) 5, 27, 84, 477, 576, 790, 813, 948, 1001
BstEII GGTNACC 2 cut(s) 459, 942
BstF5I GGATG 2 cut(s) 417, 893
BstKTI GATC 6 cut(s) 37, 43, 272, 377, 470, 755
BstMAI GTCTC 2 cut(s) 519, 789
BstMBI GATC 6 cut(s) 34, 40, 269, 374, 467, 752
BstNI CCWGG 4 cut(s) 19, 150, 267, 408
BstPI GGTNACC 2 cut(s) 459, 942
BstSCI CCNGG 4 cut(s) 17, 148, 265, 406
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 467, 752
BstYI RGATCY 2 cut(s) 467, 752
BsuRI GGCC 1 cut(s) 1200
BtgZI GCGATG 1 cut(s) 1149
BtsCI GGATG 2 cut(s) 417, 893
BtsI GCAGTG 2 cut(s) 141, 1136
BtsIMutI CAGTG 3 cut(s) 141, 605, 1136
Cac8I GCNNGC 3 cut(s) 79, 650, 954
CaiI CAGNNNCTG 2 cut(s) 191, 575
Cfr13I GGNCC 4 cut(s) 15, 113, 261, 404
CsiI ACCWGGT 1 cut(s) 17
Csp6I GTAC 1 cut(s) 982
CviAII CATG 1 cut(s) 839
CviQI GTAC 1 cut(s) 982
DdeI CTNAG 9 cut(s) 5, 27, 84, 477, 576, 790, 813, 948, 1001
DpnI GATC 6 cut(s) 36, 42, 271, 376, 469, 754
DpnII GATC 6 cut(s) 34, 40, 269, 374, 467, 752
Eam1104I CTCTTC 2 cut(s) 5, 1029
EarI CTCTTC 2 cut(s) 5, 1029
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 789
Eco47I GGWCC 4 cut(s) 15, 113, 261, 404
Eco57I CTGAAG 1 cut(s) 918
Eco88I CYCGRG 2 cut(s) 426, 1160
Eco91I GGTNACC 2 cut(s) 459, 942
EcoO109I RGGNCCY 1 cut(s) 261
EcoO65I GGTNACC 2 cut(s) 459, 942
EcoRII CCWGG 4 cut(s) 17, 148, 265, 406
EcoT38I GRGCYC 1 cut(s) 209
FaeI CATG 1 cut(s) 842
FaiI YATR 8 cut(s) 176, 288, 486, 822, 840, 864, 1055, 1057
FalI AAGNNNNNCTT 2 cut(s) 118, 150
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 838
FauI CCCGC 1 cut(s) 994
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 2 cut(s) 424, 900
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 250
FspBI CTAG 5 cut(s) 221, 245, 465, 618, 795
GluI GCNGC 1 cut(s) 250
GsaI CCCAGC 1 cut(s) 301
HaeIII GGCC 1 cut(s) 1200
HapII CCGG 1 cut(s) 97
Hin1II CATG 1 cut(s) 842
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 650
HpaII CCGG 1 cut(s) 97
HphI GGTGA 5 cut(s) 264, 453, 884, 936, 1076
Hpy166II GTNNAC 1 cut(s) 24
Hpy188III TCNNGA 6 cut(s) 38, 221, 278, 338, 1000, 1160
Hpy8I GTNNAC 1 cut(s) 24
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 2 cut(s) 748, 1019
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 2 cut(s) 488, 1080
HpyF3I CTNAG 9 cut(s) 5, 27, 84, 477, 576, 790, 813, 948, 1001
HpySE526I ACGT 1 cut(s) 596
Hsp92II CATG 1 cut(s) 842
Kzo9I GATC 6 cut(s) 34, 40, 269, 374, 467, 752
LmnI GCTCC 3 cut(s) 204, 294, 1126
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 3 cut(s) 67, 333, 878
MabI ACCWGGT 1 cut(s) 17
MaeI CTAG 5 cut(s) 221, 245, 465, 618, 795
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 5 cut(s) 87, 459, 872, 942, 1019
MalI GATC 6 cut(s) 36, 42, 271, 376, 469, 754
MboI GATC 6 cut(s) 34, 40, 269, 374, 467, 752
MboII GAAGA 5 cut(s) 22, 911, 940, 1046, 1137
MflI RGATCY 2 cut(s) 467, 752
MhlI GDGCHC 1 cut(s) 209
MlyI GAGTC 5 cut(s) 95, 178, 326, 587, 1172
MmeI TCCRAC 1 cut(s) 730
MseI TTAA 5 cut(s) 182, 320, 644, 654, 695
MslI CAYNNNNRTG 1 cut(s) 740
MspA1I CMGCKG 1 cut(s) 952
MspCI CTTAAG 1 cut(s) 319
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 4 cut(s) 19, 150, 267, 408
MvaI CCWGG 4 cut(s) 19, 150, 267, 408
NdeII GATC 6 cut(s) 34, 40, 269, 374, 467, 752
NlaIII CATG 1 cut(s) 842
NlaIV GGNNCC 4 cut(s) 206, 263, 754, 844
NmuCI GTSAC 4 cut(s) 87, 459, 872, 942
NspV TTCGAA 1 cut(s) 1191
PaeR7I CTCGAG 1 cut(s) 1160
PfeI GAWTC 6 cut(s) 118, 188, 194, 431, 611, 1142
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 251
PleI GAGTC 5 cut(s) 94, 177, 326, 586, 1171
PpsI GAGTC 5 cut(s) 94, 177, 326, 586, 1171
PpuMI RGGWCCY 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 261
Psp6I CCWGG 4 cut(s) 17, 148, 265, 406
PspEI GGTNACC 2 cut(s) 459, 942
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 4 cut(s) 17, 148, 265, 406
PspN4I GGNNCC 4 cut(s) 206, 263, 754, 844
PspPI GGNCC 4 cut(s) 15, 113, 261, 404
PspPPI RGGWCCY 1 cut(s) 261
PstNI CAGNNNCTG 2 cut(s) 191, 575
PsuI RGATCY 2 cut(s) 467, 752
PsyI GACNNNGTC 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 1 cut(s) 983
RsaNI GTAC 1 cut(s) 982
RseI CAYNNNNRTG 1 cut(s) 740
SaqAI TTAA 5 cut(s) 182, 320, 644, 654, 695
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 6 cut(s) 34, 40, 269, 374, 467, 752
Sau96I GGNCC 4 cut(s) 15, 113, 261, 404
SchI GAGTC 5 cut(s) 95, 178, 326, 587, 1172
ScrFI CCNGG 4 cut(s) 19, 150, 267, 408
SduI GDGCHC 1 cut(s) 209
SexAI ACCWGGT 1 cut(s) 17
SfaNI GCATC 3 cut(s) 67, 333, 878
SfcI CTRYAG 1 cut(s) 174
Sfr274I CTCGAG 1 cut(s) 1160
SfuI TTCGAA 1 cut(s) 1191
SinI GGWCC 4 cut(s) 15, 113, 261, 404
SlaI CTCGAG 1 cut(s) 1160
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 2 cut(s) 319, 1160
SmoI CTYRAG 2 cut(s) 319, 1160
SsiI CCGC 1 cut(s) 987
SspMI CTAG 5 cut(s) 221, 245, 465, 618, 795
StyD4I CCNGG 4 cut(s) 17, 148, 265, 406
TaaI ACNGT 2 cut(s) 748, 1019
TaiI ACGT 1 cut(s) 599
TaqI TCGA 3 cut(s) 330, 1161, 1191
TaqII GACCGA 1 cut(s) 130
TfiI GAWTC 6 cut(s) 118, 188, 194, 431, 611, 1142
Tru1I TTAA 5 cut(s) 182, 320, 644, 654, 695
Tru9I TTAA 5 cut(s) 182, 320, 644, 654, 695
TscAI CASTG 3 cut(s) 148, 612, 1136
TseFI GTSAC 4 cut(s) 87, 459, 872, 942
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 4 cut(s) 87, 459, 872, 942
TspDTI ATGAA 1 cut(s) 1042
TspRI CASTG 3 cut(s) 148, 612, 1136
Tth111I GACNNNGTC 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 319
VpaK11BI GGWCC 4 cut(s) 15, 113, 261, 404
XapI RAATTY 2 cut(s) 676, 691
XbaI TCTAGA 1 cut(s) 220
XhoI CTCGAG 1 cut(s) 1160
XspI CTAG 5 cut(s) 221, 245, 465, 618, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.