FvH4_2g30270

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006492
Physical Location & Seq
Reverse (-)
23395576 .. 23398336
2761 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30270.t2

Sequence Viewer

Length: 1329 bp
ATGCTGGTTCATATTATTGAACCACTACCCAGATTTCAGTTCATCTCAATATTTGATAGCCTTGTGTTAGTTATAAAGAAGAGGGCTTTTTGGTGCCCAGTTGGGGACTTTGAGATAATGCTGAGGAAGAGGACCAGGTCAACTCAGAAGGATCAAGATCAACACCAAATGGGGCATCTGCCAATTTCTAATACTGGGTCTGAGTCACATTTCCGGTCTGATGTTCTTGGACCGAATCCGAAAAGCAACCCTTTTTTCACTATCCCTGGTCTGTTTGTGGGGTTGGGTCCTATAGGTTTAACAGATTCTGATTCAATTAGGAGCCCAACTTCGCCTCTAGATTTCAGGGTGTTTTCGAATCTAGGCAGCCCCTTTAGGTCCCCAAGATCACCTCTCGATGGGCATAAGAGGAGCTGGGGTAGTAGTAAAGTAGGCTTAAGCATCATCGACTCTTTTGATGATGATGTGAAGTGTTCTGGGAAAGTTCCCAGATCATCGGAGAGTAAGAACATTCTTTTTGGACCTGGGATGAGGATTAAAACCCGAGATTCTCGATCCAATACCAATTCTATTGGGTCACCTAGATCTCTGCCCAAGAACTATGCAATTTTCCCTCATTCCAAAGTCAAGTCTCCTTTACAAGAGAGTAGCTCTGATGTTGTTTTTGAAATTGGAGAAACCCCATCAGAACCTGAGTCATTTGGAAAAATAAGGTCTTGCTCATTCGATTCTGCTAGGACCTTTTCAACCCTATCAGGTTTAAGCAAGCTTAACCCCAATTCTACTAGAAATTTTTGCTTGGAGAATGTAACCAACCCACAATTTATAGGAGGAAGCCCCAACTCTGCCACCCTAATGAATGTTGGATCCACTGGTTCTGGCAATGAGTTTGTTGGGTCTCTCTCAGCTAGTGAGATTGAGCTTTCTGAGGATTATACTTGTGTGATTTCTCATGGTGCCAATCCAAAAACAACTCATATCTTTGGTGACTGCATTTTGTGCCACTCTGAGGATTTGAGCAAATCTTTTGAGAATGAGAAGAAGGGAATTGGATCACCTCAGCTGGCTACAAGCTTGGGGAGTTTTGTTCAGTACCCCTCAAACAATTTCCTGAGCTTCTGCCACTACTGTAACAAGGAACTGGAAGAGGGGAAAGACATTTACATATACAGGGGTGAAAAAGCATTTTGCAGCTTAAGTTGCCGCTCTGTGGAGATTTTGAATGATGAGGAATTGGAAATGTGCAATGATGAACCTTCTGAAGAGCCTCTTGAGTCAGATGATGGCAAGGAACTTTTTTTTGAAACTGGCCTCATTGCTGATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

443

Amino Acids

48.71

Weight (kDa)

5.58

Isoelectric Point (pI)

60.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 325 - 372 7.8e-21 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
AccB1I GGYRCC 2 cut(s) 93, 956
AccBSI CCGCTC 1 cut(s) 1206
AciI CCGC 1 cut(s) 1204
AclWI GGATC 5 cut(s) 159, 549, 861, 874, 1060
AcsI RAATTY 1 cut(s) 790
AcuI CTGAAG 1 cut(s) 1281
AfaI GTAC 1 cut(s) 1094
AfiI CCNNNNNNNGG 4 cut(s) 103, 398, 1009, 1210
AflII CTTAAG 2 cut(s) 436, 1195
AgsI TTSAA 6 cut(s) 20, 315, 668, 747, 1222, 1304
AjnI CCWGG 3 cut(s) 134, 265, 523
AluBI AGCT 9 cut(s) 414, 651, 769, 908, 922, 1063, 1074, 1116, 1194
AluI AGCT 9 cut(s) 414, 651, 769, 908, 922, 1063, 1074, 1116, 1194
Alw26I GTCTC 2 cut(s) 636, 903
AlwI GGATC 5 cut(s) 159, 549, 861, 874, 1060
AlwNI CAGNNNCTG 2 cut(s) 308, 692
Ama87I CYCGRG 1 cut(s) 543
AoxI GGCC 1 cut(s) 1309
ApeKI GCWGC 2 cut(s) 366, 1191
ApoI RAATTY 1 cut(s) 790
AspS9I GGNCC 6 cut(s) 132, 230, 287, 378, 521, 738
AsuHPI GGTGA 5 cut(s) 381, 570, 998, 1047, 1187
AsuII TTCGAA 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 543
AvaII GGWCC 6 cut(s) 132, 230, 287, 378, 521, 738
BaeGI GKGCMC 1 cut(s) 98
BamHI GGATCC 1 cut(s) 866
BanI GGYRCC 2 cut(s) 93, 956
BanII GRGCYC 1 cut(s) 326
BbvCI CCTCAGC 2 cut(s) 122, 1059
BbvI GCAGC 2 cut(s) 378, 1203
BccI CCATC 3 cut(s) 392, 691, 1277
BciT130I CCWGG 3 cut(s) 136, 267, 525
BcoDI GTCTC 2 cut(s) 636, 903
BfaI CTAG 6 cut(s) 338, 362, 582, 735, 786, 909
BfmI CTRYAG 1 cut(s) 291
BfrI CTTAAG 2 cut(s) 436, 1195
BglII AGATCT 1 cut(s) 584
BisI GCNGC 3 cut(s) 367, 1192, 1204
BlsI GCNGC 3 cut(s) 368, 1193, 1205
Bme1390I CCNGG 3 cut(s) 136, 267, 525
Bme18I GGWCC 6 cut(s) 132, 230, 287, 378, 521, 738
BmeT110I CYCGRG 1 cut(s) 543
BmgT120I GGNCC 6 cut(s) 132, 230, 287, 378, 521, 738
BmiI GGNNCC 6 cut(s) 95, 288, 323, 380, 868, 958
BmrFI CCNGG 3 cut(s) 136, 267, 525
BmrI ACTGGG 2 cut(s) 92, 204
BmsI GCATC 2 cut(s) 184, 450
BmuI ACTGGG 2 cut(s) 92, 204
BplI GAGNNNNNCTC 2 cut(s) 635, 667
Bpu10I CCTNAGC 3 cut(s) 122, 1059, 1112
Bpu14I TTCGAA 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 1292
BsaBI GATNNNNATC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 903
BsaJI CCNNGG 2 cut(s) 265, 524
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 403, 433
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 398, 1009, 1210
Bse1I ACTGG 5 cut(s) 98, 199, 877, 1146, 1312
Bse3DI GCAATG 3 cut(s) 889, 1252, 1314
Bse8I GATNNNNATC 1 cut(s) 156
BseBI CCWGG 3 cut(s) 136, 267, 525
BseDI CCNNGG 2 cut(s) 265, 524
BseGI GGATG 1 cut(s) 534
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 4 cut(s) 103, 398, 1009, 1210
BseMI GCAATG 3 cut(s) 889, 1252, 1314
BseMII CTCAG 9 cut(s) 113, 158, 192, 684, 918, 918, 999, 1073, 1103
BseNI ACTGG 5 cut(s) 98, 199, 877, 1146, 1312
BseRI GAGGAG 1 cut(s) 424
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 2 cut(s) 378, 1203
BseYI CCCAGC 1 cut(s) 414
BshFI GGCC 1 cut(s) 1311
BshNI GGYRCC 2 cut(s) 93, 956
BsiHKCI CYCGRG 1 cut(s) 543
BsiSI CCGG 1 cut(s) 214
BslFI GGGAC 2 cut(s) 119, 364
BslI CCNNNNNNNGG 4 cut(s) 103, 398, 1009, 1210
BsmAI GTCTC 2 cut(s) 636, 903
BsmFI GGGAC 2 cut(s) 119, 364
BsnI GGCC 1 cut(s) 1311
Bso31I GGTCTC 1 cut(s) 903
BsoBI CYCGRG 1 cut(s) 543
Bsp119I TTCGAA 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 98, 326
Bsp143I GATC 8 cut(s) 151, 157, 386, 491, 554, 584, 866, 1052
BspACI CCGC 1 cut(s) 1204
BspANI GGCC 1 cut(s) 1311
BspCNI CTCAG 9 cut(s) 114, 157, 193, 685, 917, 919, 1000, 1072, 1104
BspLI GGNNCC 6 cut(s) 95, 288, 323, 380, 868, 958
BspPI GGATC 5 cut(s) 159, 549, 861, 874, 1060
BspQI GCTCTTC 1 cut(s) 1257
BspT104I TTCGAA 1 cut(s) 356
BspT107I GGYRCC 2 cut(s) 93, 956
BspTI CTTAAG 2 cut(s) 436, 1195
BspTNI GGTCTC 1 cut(s) 903
BsrBI CCGCTC 1 cut(s) 1206
BsrDI GCAATG 3 cut(s) 889, 1252, 1314
BsrI ACTGG 5 cut(s) 98, 199, 877, 1146, 1312
BssECI CCNNGG 2 cut(s) 265, 524
BssMI GATC 8 cut(s) 151, 157, 386, 491, 554, 584, 866, 1052
Bst2UI CCWGG 3 cut(s) 136, 267, 525
Bst4CI ACNGT 1 cut(s) 1130
Bst6I CTCTTC 4 cut(s) 74, 122, 1140, 1257
BstAFI CTTAAG 2 cut(s) 436, 1195
BstAPI GCANNNNNTGC 1 cut(s) 999
BstBI TTCGAA 1 cut(s) 356
BstC8I GCNNGC 2 cut(s) 767, 1065
BstDEI CTNAG 9 cut(s) 122, 144, 201, 693, 904, 927, 1008, 1059, 1112
BstEII GGTNACC 1 cut(s) 576
BstF5I GGATG 1 cut(s) 534
BstKTI GATC 8 cut(s) 154, 160, 389, 494, 557, 587, 869, 1055
BstMAI GTCTC 2 cut(s) 636, 903
BstMBI GATC 8 cut(s) 151, 157, 386, 491, 554, 584, 866, 1052
BstMWI GCNNNNNNNGC 2 cut(s) 999, 1200
BstNI CCWGG 3 cut(s) 136, 267, 525
BstPI GGTNACC 1 cut(s) 576
BstSCI CCNGG 3 cut(s) 134, 265, 523
BstSFI CTRYAG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 378, 1203
BstX2I RGATCY 2 cut(s) 584, 866
BstYI RGATCY 2 cut(s) 584, 866
BsuRI GGCC 1 cut(s) 1311
BtsCI GGATG 1 cut(s) 534
BtsIMutI CAGTG 1 cut(s) 870
Cac8I GCNNGC 2 cut(s) 767, 1065
CaiI CAGNNNCTG 2 cut(s) 308, 692
Cfr13I GGNCC 6 cut(s) 132, 230, 287, 378, 521, 738
CsiI ACCWGGT 1 cut(s) 134
Csp6I GTAC 1 cut(s) 1093
CviAII CATG 1 cut(s) 953
CviQI GTAC 1 cut(s) 1093
DdeI CTNAG 9 cut(s) 122, 144, 201, 693, 904, 927, 1008, 1059, 1112
DpnI GATC 8 cut(s) 153, 159, 388, 493, 556, 586, 868, 1054
DpnII GATC 8 cut(s) 151, 157, 386, 491, 554, 584, 866, 1052
Eam1104I CTCTTC 4 cut(s) 74, 122, 1140, 1257
EarI CTCTTC 4 cut(s) 74, 122, 1140, 1257
Eco24I GRGCYC 1 cut(s) 326
Eco31I GGTCTC 1 cut(s) 903
Eco47I GGWCC 6 cut(s) 132, 230, 287, 378, 521, 738
Eco57I CTGAAG 1 cut(s) 1281
Eco88I CYCGRG 1 cut(s) 543
Eco91I GGTNACC 1 cut(s) 576
EcoO109I RGGNCCY 3 cut(s) 287, 378, 738
EcoO65I GGTNACC 1 cut(s) 576
EcoRII CCWGG 3 cut(s) 134, 265, 523
EcoT38I GRGCYC 1 cut(s) 326
FaeI CATG 1 cut(s) 956
FalI AAGNNNNNCTT 4 cut(s) 235, 267, 1254, 1286
FaqI GGGAC 2 cut(s) 119, 364
FatI CATG 1 cut(s) 952
Fnu4HI GCNGC 3 cut(s) 367, 1192, 1204
FokI GGATG 1 cut(s) 541
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 3 cut(s) 367, 1192, 1204
FspBI CTAG 6 cut(s) 338, 362, 582, 735, 786, 909
GluI GCNGC 3 cut(s) 367, 1192, 1204
GsaI CCCAGC 1 cut(s) 418
HaeIII GGCC 1 cut(s) 1311
HapII CCGG 1 cut(s) 214
Hin1II CATG 1 cut(s) 956
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HindIII AAGCTT 2 cut(s) 767, 1072
HpaII CCGG 1 cut(s) 214
HphI GGTGA 5 cut(s) 381, 570, 998, 1047, 1187
Hpy166II GTNNAC 1 cut(s) 141
Hpy188III TCNNGA 6 cut(s) 155, 338, 395, 552, 1111, 1271
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 3 cut(s) 142, 1036, 1266
HpyCH4III ACNGT 1 cut(s) 1130
HpyCH4V TGCA 4 cut(s) 605, 993, 1191, 1245
HpyF10VI GCNNNNNNNGC 2 cut(s) 999, 1200
HpyF3I CTNAG 9 cut(s) 122, 144, 201, 693, 904, 927, 1008, 1059, 1112
Hsp92II CATG 1 cut(s) 956
Kzo9I GATC 8 cut(s) 151, 157, 386, 491, 554, 584, 866, 1052
LguI GCTCTTC 1 cut(s) 1257
LmnI GCTCC 2 cut(s) 321, 411
Lsp1109I GCAGC 2 cut(s) 378, 1203
LweI GCATC 2 cut(s) 184, 450
MabI ACCWGGT 1 cut(s) 134
MaeI CTAG 6 cut(s) 338, 362, 582, 735, 786, 909
MaeIII GTNAC 5 cut(s) 204, 576, 808, 986, 1130
MalI GATC 8 cut(s) 153, 159, 388, 493, 556, 586, 868, 1054
MbiI CCGCTC 1 cut(s) 1206
MboI GATC 8 cut(s) 151, 157, 386, 491, 554, 584, 866, 1052
MboII GAAGA 5 cut(s) 91, 139, 1051, 1157, 1274
MflI RGATCY 2 cut(s) 584, 866
MhlI GDGCHC 2 cut(s) 98, 326
MlyI GAGTC 4 cut(s) 212, 443, 704, 1283
MmeI TCCRAC 1 cut(s) 844
MseI TTAA 6 cut(s) 299, 437, 537, 761, 771, 1196
MslI CAYNNNNRTG 1 cut(s) 854
MspA1I CMGCKG 1 cut(s) 1063
MspCI CTTAAG 2 cut(s) 436, 1195
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 3 cut(s) 136, 267, 525
MvaI CCWGG 3 cut(s) 136, 267, 525
MwoI GCNNNNNNNGC 2 cut(s) 999, 1200
NdeII GATC 8 cut(s) 151, 157, 386, 491, 554, 584, 866, 1052
NlaIII CATG 1 cut(s) 956
NlaIV GGNNCC 6 cut(s) 95, 288, 323, 380, 868, 958
NmuCI GTSAC 3 cut(s) 204, 576, 986
NspV TTCGAA 1 cut(s) 356
PciSI GCTCTTC 1 cut(s) 1257
PfeI GAWTC 6 cut(s) 235, 305, 311, 358, 548, 728
PflFI GACNNNGTC 1 cut(s) 136
PkrI GCNGC 3 cut(s) 368, 1193, 1205
PleI GAGTC 4 cut(s) 211, 443, 703, 1282
PpsI GAGTC 4 cut(s) 211, 443, 703, 1282
PpuMI RGGWCCY 3 cut(s) 287, 378, 738
PsiI TTATAA 1 cut(s) 74
Psp5II RGGWCCY 3 cut(s) 287, 378, 738
Psp6I CCWGG 3 cut(s) 134, 265, 523
PspEI GGTNACC 1 cut(s) 576
PspFI CCCAGC 1 cut(s) 414
PspGI CCWGG 3 cut(s) 134, 265, 523
PspN4I GGNNCC 6 cut(s) 95, 288, 323, 380, 868, 958
PspPI GGNCC 6 cut(s) 132, 230, 287, 378, 521, 738
PspPPI RGGWCCY 3 cut(s) 287, 378, 738
PstNI CAGNNNCTG 2 cut(s) 308, 692
PsuI RGATCY 2 cut(s) 584, 866
PsyI GACNNNGTC 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 1063
RsaI GTAC 1 cut(s) 1094
RsaNI GTAC 1 cut(s) 1093
RseI CAYNNNNRTG 1 cut(s) 854
SapI GCTCTTC 1 cut(s) 1257
SaqAI TTAA 6 cut(s) 299, 437, 537, 761, 771, 1196
SatI GCNGC 3 cut(s) 367, 1192, 1204
Sau3AI GATC 8 cut(s) 151, 157, 386, 491, 554, 584, 866, 1052
Sau96I GGNCC 6 cut(s) 132, 230, 287, 378, 521, 738
SchI GAGTC 4 cut(s) 212, 443, 704, 1283
ScrFI CCNGG 3 cut(s) 136, 267, 525
SduI GDGCHC 2 cut(s) 98, 326
SexAI ACCWGGT 1 cut(s) 134
SfaNI GCATC 2 cut(s) 184, 450
SfcI CTRYAG 1 cut(s) 291
SfuI TTCGAA 1 cut(s) 356
SinI GGWCC 6 cut(s) 132, 230, 287, 378, 521, 738
SmiMI CAYNNNNRTG 1 cut(s) 854
SmlI CTYRAG 3 cut(s) 436, 1195, 1271
SmoI CTYRAG 3 cut(s) 436, 1195, 1271
SsiI CCGC 1 cut(s) 1204
SspI AATATT 1 cut(s) 51
SspMI CTAG 6 cut(s) 338, 362, 582, 735, 786, 909
StyD4I CCNGG 3 cut(s) 134, 265, 523
TaaI ACNGT 1 cut(s) 1130
TaqI TCGA 5 cut(s) 356, 396, 447, 553, 726
TaqII GACCGA 1 cut(s) 247
TauI GCSGC 1 cut(s) 1206
TfiI GAWTC 6 cut(s) 235, 305, 311, 358, 548, 728
Tru1I TTAA 6 cut(s) 299, 437, 537, 761, 771, 1196
Tru9I TTAA 6 cut(s) 299, 437, 537, 761, 771, 1196
TscAI CASTG 1 cut(s) 877
TseFI GTSAC 3 cut(s) 204, 576, 986
TseI GCWGC 2 cut(s) 366, 1191
Tsp45I GTSAC 3 cut(s) 204, 576, 986
TspDTI ATGAA 3 cut(s) 31, 872, 1266
TspRI CASTG 1 cut(s) 877
Tth111I GACNNNGTC 1 cut(s) 136
Vha464I CTTAAG 2 cut(s) 436, 1195
VpaK11BI GGWCC 6 cut(s) 132, 230, 287, 378, 521, 738
XapI RAATTY 1 cut(s) 790
XbaI TCTAGA 1 cut(s) 337
XspI CTAG 6 cut(s) 338, 362, 582, 735, 786, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.