Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006492

Physical Location & Seq

Genomic Coordinates Forward (+)

21327267 .. 21328022

Gene Structure 756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g20980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAGCTTTCTGAGGATTACACTTGTGTGATTTCTCGTGGGGCGAATCCGAGAACGACTCACATATTTGATAACTGCATTGTGGAAAGTTACTATACTTTGTCAGATCAGTCGAGCTCGTGTTCTGAGAATTTTCTTAGCTTTTGTTACACATGCAAGAAGAGTCTTGAGCAGAAGATTGACATCTATATTTACAGAGGTGAGAAGGCTTTTTGCAGTCGAGAATGCCGCAACCAAGAAATGCTCTTGGATGAAGTTGGGAGCACAGAACTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000932 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0010033 GO:0010154 GO:0010162 GO:0010431 GO:0010494 GO:0021700 GO:0022414 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033993 GO:0035770 GO:0036464 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071695 GO:0097305 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

93

Amino Acids

10.6

Weight (kDa)

4.64

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-FLZ	PF04570	38 - 85	1.3e-20	zinc-finger of the FCS-type, C2-C2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11460
fragaria_vesca	FvH4_2g30270 FvH4_2g30270 FvH4_2g30270
malus_domestica	MD08G1134900.v1.1 MD15G1113700.v1.1
prunus_persica	Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1
pyrus_communis	pycom03g20980 pycom08g11380 pycom15g10210
rosa_chinensis	RchiOBHm_Chr6g0312601
rosa_laevigata	RLG00000010312
rosa_multiflora	Rmu_sc0002859.1_g000009 Rmu_ssc0000412.1_g000001
rosa_roxburghii	Rroxscaffold_7G00156660
rosa_rugosa	Rorug06G0396800 Rorug06G0396900
rosa_samantha	Rh6AG514800 Rh6BG525200 Rh6CG530500 Rh6DG516900
rosa_wichuraiana	Rw6G044720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	130
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	3 cut(s)	7, 117, 141
AluI	AGCT	3 cut(s)	7, 117, 141
Alw21I	GWGCWC	2 cut(s)	119, 266
ApoI	RAATTY	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	119
BauI	CACGAG	2 cut(s)	36, 118
Bbv12I	GWGCWC	2 cut(s)	119, 266
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
BpuEI	CTTGAG	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	182
Bse8I	GATNNNNATC	1 cut(s)	182
BseGI	GGATG	1 cut(s)	256
BseJI	GATNNNNATC	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	119, 266
BsmI	GAATGC	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	119, 266
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	1 cut(s)	229
BspCNI	CTCAG	2 cut(s)	4, 118
BssMI	GATC	1 cut(s)	106
BssSI	CACGAG	2 cut(s)	36, 118
Bst2BI	CACGAG	2 cut(s)	36, 118
Bst6I	CTCTTC	1 cut(s)	155
BstDEI	CTNAG	3 cut(s)	12, 126, 137
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	256
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	4 cut(s)	7, 117, 141, 209
CviKI_1	RGCY	4 cut(s)	7, 117, 141, 209
DdeI	CTNAG	3 cut(s)	12, 126, 137
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	1 cut(s)	156
FaiI	YATR	4 cut(s)	65, 96, 154, 189
FatI	CATG	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	229
Hin1II	CATG	1 cut(s)	156
HinfI	GANTC	3 cut(s)	46, 58, 163
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	4 cut(s)	13, 51, 106, 127
Hpy188III	TCNNGA	2 cut(s)	167, 221
HpyAV	CCTTC	1 cut(s)	199
HpyCH4V	TGCA	3 cut(s)	78, 156, 216
HpyF3I	CTNAG	3 cut(s)	12, 126, 137
Hsp92II	CATG	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	2 cut(s)	4, 261
MaeIII	GTNAC	2 cut(s)	89, 146
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	172, 187
MhlI	GDGCHC	2 cut(s)	119, 266
MluCI	AATT	1 cut(s)	130
MlyI	GAGTC	2 cut(s)	52, 172
MnlI	CCTC	2 cut(s)	7, 191
MslI	CAYNNNNRTG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	230
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	1 cut(s)	156
NspI	RCATGY	1 cut(s)	156
OliI	CACNNNNGTG	1 cut(s)	26
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	2 cut(s)	52, 171
PpsI	GAGTC	2 cut(s)	52, 171
Psp124BI	GAGCTC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	119
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	1 cut(s)	106
SchI	GAGTC	2 cut(s)	52, 172
SduI	GDGCHC	2 cut(s)	119, 266
SetI	ASST	4 cut(s)	9, 119, 143, 202
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	1 cut(s)	229
SstI	GAGCTC	1 cut(s)	119
TaqI	TCGA	2 cut(s)	113, 220
TasI	AATT	1 cut(s)	130
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	267
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.