Rorug06G0396800

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006492
Physical Location & Seq
Reverse (-)
54288452 .. 54290625
2174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0396800.1

Sequence Viewer

Length: 987 bp
ATGGAGAAAAGACCAACAGCCTTCTCTTATACACATAAAATCCTCTTGTTTGTGTGGTTATGTCAGGCTTCCTGTGCAAGTGCAGACCTCACATTGAATTTCTACTCAACTTCATGCCCTTCTGCTGAGCTTGTGGTCAGAAACACAGTCAGATCAGCTTCAAACATGGACCCTACTGTCCCGGGGAAGCTCCTACGCTTGCTCTTCCATGACTGCTTTGTGGAGGGTTGTGATGCCTCTGTGCTTCTACAAGGAAATGGAACTGAGAGAAGCGATCCAGCAAACCAATCTCTGGGAGGGTTTTCAGTTATTGATTCAGCAAAAAGACTGCTTGAAATTTTCTGTCCAGGAACTGTTTCTTGTGCTGACATTGTTGCTTTGGCTGCTAGAGATGCTGTTGAACTTACGGGAGGACCCGTGGTTCATATTCCAACTGGTAGGCGAGATGGGAAGGTTTCATCAGCTTCCAATGTCAGGCCTAATATTGTAGATACAAGCTTTACAATGACTGAGATGATAAAGCTCTTCTCTTCTAAAGGCTTGTCTTTGGAGGACCTTGTAACCCTCTCAGGAGCTCACACTATAGGAGCAGCTCATTGCAGTGCATTCAGTGACCGGTTCCAAGAAGACTCGAAAGGAAAATTCACACTCATTGACACATCTTTAGACAATGGCTATGCAGAGAAGCTCATGAAACAGTGCCCTCCAGGCGCAAATCCATCTATAACAGTCCAAAATGATCCTGAAACTGCCTTTGTGTTTGATAATCATTACTACGGCAATCTATTGGCCCACAGAGGGCTGTTTCAATCAGATTCTGTCCTGTTCACCGACAGTAGATCCAGCAAACAAGTGAAGAATTTTGCAGAAGACCAAGTTGGATTTTTTGAGAGTTGGGTTCAGTCATTTTTGAAGCTTACTAGCATTCATGTTAAGACAGGTGATGAAGGGGAAATTCGAGCATTTTGTCCTACAGCTAATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

328

Amino Acids

35.57

Weight (kDa)

5.62

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 291 6.7e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AccB7I CCANNNNNTGG 1 cut(s) 292
AclWI GGATC 3 cut(s) 269, 734, 834
AcsI RAATTY 5 cut(s) 97, 336, 641, 859, 954
AfiI CCNNNNNNNGG 3 cut(s) 292, 474, 798
AgeI ACCGGT 1 cut(s) 615
AgsI TTSAA 6 cut(s) 97, 162, 335, 401, 809, 913
AjnI CCWGG 2 cut(s) 346, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 861, 893
AloI GAACNNNNNNTCC 2 cut(s) 405, 437
Alw21I GWGCWC 1 cut(s) 577
AlwI GGATC 3 cut(s) 269, 734, 834
AlwNI CAGNNNCTG 2 cut(s) 353, 818
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 2 cut(s) 476, 789
ApeKI GCWGC 2 cut(s) 383, 590
ApoI RAATTY 5 cut(s) 97, 336, 641, 859, 954
AsiGI ACCGGT 1 cut(s) 615
Asp700I GAANNNNTTC 1 cut(s) 355
AspLEI GCGC 1 cut(s) 713
AspS9I GGNCC 4 cut(s) 169, 413, 553, 790
AsuC2I CCSGG 2 cut(s) 182, 183
AsuHPI GGTGA 2 cut(s) 820, 953
AvaI CYCGRG 1 cut(s) 181
AvaII GGWCC 3 cut(s) 169, 413, 553
BaeGI GKGCMC 1 cut(s) 704
BanII GRGCYC 1 cut(s) 577
BbsI GAAGAC 2 cut(s) 633, 876
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 2 cut(s) 370, 602
BccI CCATC 2 cut(s) 440, 727
BceAI ACGGC 1 cut(s) 793
BciT130I CCWGG 2 cut(s) 348, 708
BcnI CCSGG 2 cut(s) 182, 183
BfaI CTAG 2 cut(s) 387, 921
BfmI CTRYAG 2 cut(s) 582, 972
BglI GCCNNNNNGGC 1 cut(s) 708
BisI GCNGC 2 cut(s) 384, 591
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 2 cut(s) 385, 592
Bme1390I CCNGG 4 cut(s) 182, 183, 348, 708
Bme18I GGWCC 3 cut(s) 169, 413, 553
BmeT110I CYCGRG 1 cut(s) 181
BmgT120I GGNCC 4 cut(s) 169, 413, 553, 790
BmiI GGNNCC 3 cut(s) 171, 415, 620
BmrFI CCNGG 4 cut(s) 182, 183, 348, 708
BmsI GCATC 2 cut(s) 223, 382
BpiI GAAGAC 2 cut(s) 633, 876
BpmI CTGGAG 1 cut(s) 690
Bpu1102I GCTNAGC 1 cut(s) 126
BpuMI CCSGG 2 cut(s) 182, 183
BsaJI CCNNGG 3 cut(s) 181, 182, 417
BsaWI WCCGGW 1 cut(s) 615
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 474, 798
Bse118I RCCGGY 1 cut(s) 615
Bse1I ACTGG 1 cut(s) 439
Bse3DI GCAATG 1 cut(s) 595
BseBI CCWGG 2 cut(s) 348, 708
BseDI CCNNGG 3 cut(s) 181, 182, 417
BseLI CCNNNNNNNGG 3 cut(s) 292, 474, 798
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 4 cut(s) 117, 255, 501, 582
BseNI ACTGG 1 cut(s) 439
BseSI GKGCMC 1 cut(s) 704
BseXI GCAGC 2 cut(s) 370, 602
BsgI GTGCAG 1 cut(s) 102
BshFI GGCC 2 cut(s) 478, 791
BshTI ACCGGT 1 cut(s) 615
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 2 cut(s) 182, 616
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 3 cut(s) 292, 474, 798
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 2 cut(s) 605, 924
BsnI GGCC 2 cut(s) 478, 791
BsoBI CYCGRG 1 cut(s) 181
Bsp1286I GDGCHC 2 cut(s) 577, 704
Bsp143I GATC 4 cut(s) 152, 274, 739, 839
Bsp1720I GCTNAGC 1 cut(s) 126
BspANI GGCC 2 cut(s) 478, 791
BspCNI CTCAG 4 cut(s) 118, 256, 502, 581
BspHI TCATGA 1 cut(s) 690
BspLI GGNNCC 3 cut(s) 171, 415, 620
BspPI GGATC 3 cut(s) 269, 734, 834
BspQI GCTCTTC 2 cut(s) 209, 530
BsrDI GCAATG 1 cut(s) 595
BsrFI RCCGGY 1 cut(s) 615
BsrI ACTGG 1 cut(s) 439
BssAI RCCGGY 1 cut(s) 615
BssECI CCNNGG 3 cut(s) 181, 182, 417
BssMI GATC 4 cut(s) 152, 274, 739, 839
Bst2UI CCWGG 2 cut(s) 348, 708
Bst4CI ACNGT 6 cut(s) 148, 178, 355, 699, 730, 836
Bst6I CTCTTC 3 cut(s) 209, 530, 535
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 4 cut(s) 126, 264, 510, 568
BstDSI CCRYGG 1 cut(s) 417
BstHHI GCGC 1 cut(s) 713
BstKTI GATC 4 cut(s) 155, 277, 742, 842
BstMBI GATC 4 cut(s) 152, 274, 739, 839
BstMWI GCNNNNNNNGC 4 cut(s) 74, 383, 392, 708
BstNI CCWGG 2 cut(s) 348, 708
BstSCI CCNGG 4 cut(s) 180, 181, 346, 706
BstSFI CTRYAG 2 cut(s) 582, 972
BstSLI GKGCMC 1 cut(s) 704
BstV1I GCAGC 2 cut(s) 370, 602
BstV2I GAAGAC 2 cut(s) 633, 876
BstX2I RGATCY 1 cut(s) 839
BstYI RGATCY 1 cut(s) 839
BsuRI GGCC 2 cut(s) 478, 791
BtgI CCRYGG 1 cut(s) 417
BtsI GCAGTG 1 cut(s) 607
BtsIMutI CAGTG 3 cut(s) 607, 616, 704
Cac8I GCNNGC 1 cut(s) 200
CaiI CAGNNNCTG 2 cut(s) 353, 818
CciI TCATGA 1 cut(s) 690
CfoI GCGC 1 cut(s) 713
Cfr10I RCCGGY 1 cut(s) 615
Cfr13I GGNCC 4 cut(s) 169, 413, 553, 790
Cfr9I CCCGGG 1 cut(s) 181
CspAI ACCGGT 1 cut(s) 615
CviAII CATG 6 cut(s) 114, 166, 209, 691, 929, 984
DdeI CTNAG 4 cut(s) 126, 264, 510, 568
DpnI GATC 4 cut(s) 154, 276, 741, 841
DpnII GATC 4 cut(s) 152, 274, 739, 839
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eam1104I CTCTTC 3 cut(s) 209, 530, 535
EarI CTCTTC 3 cut(s) 209, 530, 535
Ecl136II GAGCTC 1 cut(s) 575
Eco147I AGGCCT 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 577
Eco47I GGWCC 3 cut(s) 169, 413, 553
Eco53kI GAGCTC 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 575
EcoO109I RGGNCCY 2 cut(s) 413, 553
EcoRII CCWGG 2 cut(s) 346, 706
EcoT22I ATGCAT 1 cut(s) 985
EcoT38I GRGCYC 1 cut(s) 577
FaeI CATG 6 cut(s) 117, 169, 212, 694, 932, 987
FaqI GGGAC 1 cut(s) 164
FatI CATG 6 cut(s) 113, 165, 208, 690, 928, 983
Fnu4HI GCNGC 2 cut(s) 384, 591
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 2 cut(s) 384, 591
FspBI CTAG 2 cut(s) 387, 921
GlaI GCGC 1 cut(s) 712
GluI GCNGC 2 cut(s) 384, 591
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 2 cut(s) 478, 791
HapII CCGG 2 cut(s) 182, 616
HhaI GCGC 1 cut(s) 713
Hin1II CATG 6 cut(s) 117, 169, 212, 694, 932, 987
Hin6I GCGC 1 cut(s) 711
HinP1I GCGC 1 cut(s) 711
HindIII AAGCTT 2 cut(s) 496, 914
HinfI GANTC 3 cut(s) 314, 629, 815
HpaII CCGG 2 cut(s) 182, 616
HphI GGTGA 2 cut(s) 820, 953
Hpy166II GTNNAC 1 cut(s) 828
Hpy188I TCNGA 3 cut(s) 140, 152, 814
Hpy188III TCNNGA 3 cut(s) 570, 691, 743
Hpy8I GTNNAC 1 cut(s) 828
HpyAV CCTTC 4 cut(s) 31, 129, 445, 941
HpyCH4III ACNGT 6 cut(s) 148, 178, 355, 699, 730, 836
HpyCH4V TGCA 7 cut(s) 77, 83, 600, 605, 680, 866, 983
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 383, 392, 708
HpyF3I CTNAG 4 cut(s) 126, 264, 510, 568
Hsp92II CATG 6 cut(s) 117, 169, 212, 694, 932, 987
HspAI GCGC 1 cut(s) 711
Kzo9I GATC 4 cut(s) 152, 274, 739, 839
LguI GCTCTTC 2 cut(s) 209, 530
LmnI GCTCC 3 cut(s) 195, 572, 587
Lsp1109I GCAGC 2 cut(s) 370, 602
LweI GCATC 2 cut(s) 223, 382
MaeI CTAG 2 cut(s) 387, 921
MaeIII GTNAC 2 cut(s) 559, 611
MalI GATC 4 cut(s) 154, 276, 741, 841
MboI GATC 4 cut(s) 152, 274, 739, 839
MboII GAAGA 6 cut(s) 196, 517, 522, 638, 868, 881
MflI RGATCY 1 cut(s) 839
MhlI GDGCHC 2 cut(s) 577, 704
MluCI AATT 5 cut(s) 97, 336, 641, 859, 954
MlyI GAGTC 1 cut(s) 623
MmeI TCCRAC 2 cut(s) 455, 859
Mph1103I ATGCAT 1 cut(s) 985
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 1 cut(s) 933
MslI CAYNNNNRTG 1 cut(s) 600
MspI CCGG 2 cut(s) 182, 616
MspR9I CCNGG 4 cut(s) 182, 183, 348, 708
Mva1269I GAATGC 2 cut(s) 605, 924
MvaI CCWGG 2 cut(s) 348, 708
MwoI GCNNNNNNNGC 4 cut(s) 74, 383, 392, 708
NciI CCSGG 2 cut(s) 182, 183
NdeII GATC 4 cut(s) 152, 274, 739, 839
NlaIII CATG 6 cut(s) 117, 169, 212, 694, 932, 987
NlaIV GGNNCC 3 cut(s) 171, 415, 620
NmuCI GTSAC 1 cut(s) 611
NsiI ATGCAT 1 cut(s) 985
PagI TCATGA 1 cut(s) 690
PceI AGGCCT 1 cut(s) 478
PciSI GCTCTTC 2 cut(s) 209, 530
PctI GAATGC 2 cut(s) 605, 924
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 2 cut(s) 314, 815
PflMI CCANNNNNTGG 1 cut(s) 292
PfoI TCCNGGA 1 cut(s) 346
PinAI ACCGGT 1 cut(s) 615
PkrI GCNGC 2 cut(s) 385, 592
PleI GAGTC 1 cut(s) 623
PpsI GAGTC 1 cut(s) 623
PpuMI RGGWCCY 2 cut(s) 413, 553
Psp124BI GAGCTC 1 cut(s) 577
Psp5II RGGWCCY 2 cut(s) 413, 553
Psp6I CCWGG 2 cut(s) 346, 706
PspGI CCWGG 2 cut(s) 346, 706
PspN4I GGNNCC 3 cut(s) 171, 415, 620
PspPI GGNCC 4 cut(s) 169, 413, 553, 790
PspPPI RGGWCCY 2 cut(s) 413, 553
PstNI CAGNNNCTG 2 cut(s) 353, 818
PsuI RGATCY 1 cut(s) 839
RseI CAYNNNNRTG 1 cut(s) 600
SacI GAGCTC 1 cut(s) 577
SapI GCTCTTC 2 cut(s) 209, 530
SaqAI TTAA 1 cut(s) 933
SatI GCNGC 2 cut(s) 384, 591
Sau3AI GATC 4 cut(s) 152, 274, 739, 839
Sau96I GGNCC 4 cut(s) 169, 413, 553, 790
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 4 cut(s) 182, 183, 348, 708
SduI GDGCHC 2 cut(s) 577, 704
SfaNI GCATC 2 cut(s) 223, 382
SfcI CTRYAG 2 cut(s) 582, 972
SinI GGWCC 3 cut(s) 169, 413, 553
SmaI CCCGGG 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 600
Sse9I AATT 5 cut(s) 97, 336, 641, 859, 954
SseBI AGGCCT 1 cut(s) 478
SspI AATATT 1 cut(s) 484
SspMI CTAG 2 cut(s) 387, 921
SstI GAGCTC 1 cut(s) 577
StuI AGGCCT 1 cut(s) 478
StyD4I CCNGG 4 cut(s) 180, 181, 346, 706
TaaI ACNGT 6 cut(s) 148, 178, 355, 699, 730, 836
TaqI TCGA 2 cut(s) 632, 958
TasI AATT 5 cut(s) 97, 336, 641, 859, 954
TfiI GAWTC 2 cut(s) 314, 815
Tru1I TTAA 1 cut(s) 933
Tru9I TTAA 1 cut(s) 933
TscAI CASTG 3 cut(s) 607, 616, 704
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 2 cut(s) 383, 590
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 6 cut(s) 102, 413, 447, 707, 917, 960
TspMI CCCGGG 1 cut(s) 181
TspRI CASTG 3 cut(s) 607, 616, 704
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 3 cut(s) 169, 413, 553
XapI RAATTY 5 cut(s) 97, 336, 641, 859, 954
XmaI CCCGGG 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 2 cut(s) 387, 921
Zsp2I ATGCAT 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.