Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006492

Physical Location & Seq

Genomic Coordinates Forward (+)

38789901 .. 38792756

Gene Structure 2856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G464800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGCTGAGGAAGAGAAGCAGGTCAATTCAGAAGGATCAACACCAAATGGGTCATTTGCCAATTGCTGATGCTGGGTCTGATGTTTTGGGACACAATCCCAAAAGCAACTCTTTTTTCAGTGTTCCTGGTCTGTTTGTGGGGTTGAGTTCTAAGGGTTTAATAGATTCTGATTCAGTTAGGAGCCCAACTTCTCCTCTAGATTTTAGGGTGTTTTCAAATTTGGGCAACCCCTTTAGGTCCCCACGGTCCAACAGTGATGGGCAGCAGAGGAGCTGGGGTAGCAGTAAAGTAGGCTTGAGCATCATAGATTCTTTTGATGATGATGTGAAGTTTTCTGGGAAAGTCCCTCGTTCATCAGAGAGTAAGAACATTCTTTTTGGACCTGGAATGAGGATTAAAACCCCAGATTCTCAGTCCAATACCAATTCTTTTGCTTCACCTAAATCTCTACCTAAGAACTATGCAGTTTTCCCTCATTCCAAAATCAAATCTCCTCTAGAGAAGGGTAGTTCTGATGTTCTTTTTGAAATTGGAGAATCCCCAACAGAGCCTGAGTCATTTGGAAAAATCCGGTCCTGTTCACTGGATTCTGGTAGGGCATTTTCAACCCTATCAGGTTTAAGCAACCTTAACCCTAACTCCACTTCTGGAAATTTTTGTATGGGAAGTTTAACCACCCAACCATTTATTGGAGGGAGCCCAAATTTAGCCACCCAAATGAATACTGGATCTATTGGGTCTAGCAATGGGTTAGTTGGGTCTCTCTCAGCTAGTGAGATTGAGCTTTCTGAGGATTATACTTGTGTAATTTCTCATGGTGCCAATCCCAAAAAAACTCATATCTTTGGTGACTGCATTTTGGGATGTCACTCTAATGACTTGAGCAATTTTGGTAAGAATGAGGGAAAGGAAATTGGATTTGCCCGCCCGGGCACGAGCTTGGGGAATTTTGTCCAGTACCCCTCAAACAATTTCTTGAGCTTTTGCTACTATTGTAACAAGAAATTGGAAGAGGGGAAAGACATCTACATATACAGGGGTGAGAAAGCATTTTGCAGTTTGAGTTGCCGCTCTGAGGAGATTTTAATTGATGAGGAATTGGAAAAATGCAATGACCAGTCTTCTGAGAAACCTCTTGAGTCAGATGAGGAACTTTTTGAAACTGGCATCATTGCTGATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

395

Amino Acids

42.68

Weight (kDa)

5.88

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11460
fragaria_vesca	FvH4_2g30270 FvH4_2g30270 FvH4_2g30270
malus_domestica	MD08G1134900.v1.1 MD15G1113700.v1.1
prunus_persica	Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1 Prupe.1G464800_v2.0.a1
pyrus_communis	pycom03g20980 pycom08g11380 pycom15g10210
rosa_chinensis	RchiOBHm_Chr6g0312601
rosa_laevigata	RLG00000010312
rosa_multiflora	Rmu_sc0002859.1_g000009 Rmu_ssc0000412.1_g000001
rosa_roxburghii	Rroxscaffold_7G00156660
rosa_rugosa	Rorug06G0396800 Rorug06G0396900
rosa_samantha	Rh6AG514800 Rh6BG525200 Rh6CG530500 Rh6DG516900
rosa_wichuraiana	Rw6G044720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	818
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccBSI	CCGCTC	1 cut(s)	1071
AciI	CCGC	2 cut(s)	925, 1069
AclWI	GGATC	2 cut(s)	42, 736
AcsI	RAATTY	4 cut(s)	217, 652, 703, 946
AfaI	GTAC	1 cut(s)	959
AfiI	CCNNNNNNNGG	2 cut(s)	689, 1075
AgsI	TTSAA	4 cut(s)	216, 527, 606, 1160
AjnI	CCWGG	2 cut(s)	124, 382
AluBI	AGCT	5 cut(s)	273, 770, 784, 939, 981
AluI	AGCT	5 cut(s)	273, 770, 784, 939, 981
Alw26I	GTCTC	1 cut(s)	765
AlwI	GGATC	2 cut(s)	42, 736
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	928
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	4 cut(s)	217, 652, 703, 946
AspS9I	GGNCC	4 cut(s)	237, 246, 380, 573
AsuC2I	CCSGG	2 cut(s)	929, 930
AsuHPI	GGTGA	3 cut(s)	429, 860, 1052
AvaI	CYCGRG	1 cut(s)	928
AvaII	GGWCC	4 cut(s)	237, 246, 380, 573
BaeGI	GKGCMC	1 cut(s)	935
BanI	GGYRCC	1 cut(s)	818
BanII	GRGCYC	2 cut(s)	185, 701
BauI	CACGAG	1 cut(s)	934
BbsI	GAAGAC	1 cut(s)	1113
BbvCI	CCTCAGC	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	2 cut(s)	126, 384
BcnI	CCSGG	2 cut(s)	929, 930
BcoDI	GTCTC	1 cut(s)	765
BfaI	CTAG	4 cut(s)	197, 497, 741, 771
BfuAI	ACCTGC	1 cut(s)	9
BisI	GCNGC	2 cut(s)	263, 1069
BlsI	GCNGC	2 cut(s)	264, 1070
Bme1390I	CCNGG	4 cut(s)	126, 384, 929, 930
Bme18I	GGWCC	4 cut(s)	237, 246, 380, 573
BmeT110I	CYCGRG	1 cut(s)	928
BmgT120I	GGNCC	4 cut(s)	237, 246, 380, 573
BmiI	GGNNCC	4 cut(s)	182, 239, 698, 820
BmrFI	CCNGG	4 cut(s)	126, 384, 929, 930
BmsI	GCATC	3 cut(s)	58, 309, 1176
BpiI	GAAGAC	1 cut(s)	1113
Bpu10I	CCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	4 cut(s)	316, 901, 997, 1157
BpuMI	CCSGG	2 cut(s)	929, 930
BsaI	GGTCTC	1 cut(s)	765
BsaJI	CCNNGG	2 cut(s)	242, 928
BsaWI	WCCGGW	1 cut(s)	570
BsaXI	ACNNNNNCTCC	4 cut(s)	262, 292, 623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	689, 1075
Bse1I	ACTGG	5 cut(s)	588, 730, 955, 1117, 1168
Bse3DI	GCAATG	3 cut(s)	751, 1117, 1170
BseBI	CCWGG	2 cut(s)	126, 384
BseDI	CCNNGG	2 cut(s)	242, 928
BseGI	GGATG	1 cut(s)	869
BseLI	CCNNNNNNNGG	2 cut(s)	689, 1075
BseMI	GCAATG	3 cut(s)	751, 1117, 1170
BseMII	CTCAG	6 cut(s)	425, 543, 780, 780, 1065, 1116
BseNI	ACTGG	5 cut(s)	588, 730, 955, 1117, 1168
BseRI	GAGGAG	4 cut(s)	183, 283, 483, 1091
BseSI	GKGCMC	1 cut(s)	935
BseXI	GCAGC	1 cut(s)	274
BseYI	CCCAGC	2 cut(s)	71, 273
BshNI	GGYRCC	1 cut(s)	818
BsiHKCI	CYCGRG	1 cut(s)	928
BsiSI	CCGG	2 cut(s)	571, 929
BslFI	GGGAC	3 cut(s)	102, 223, 329
BslI	CCNNNNNNNGG	2 cut(s)	689, 1075
BsmAI	GTCTC	1 cut(s)	765
BsmFI	GGGAC	3 cut(s)	102, 223, 329
Bso31I	GGTCTC	1 cut(s)	765
BsoBI	CYCGRG	1 cut(s)	928
Bsp1286I	GDGCHC	3 cut(s)	185, 701, 935
Bsp143I	GATC	2 cut(s)	34, 728
BspACI	CCGC	2 cut(s)	925, 1069
BspCNI	CTCAG	6 cut(s)	424, 544, 779, 781, 1066, 1117
BspLI	GGNNCC	4 cut(s)	182, 239, 698, 820
BspMI	ACCTGC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	42, 736
BspT107I	GGYRCC	1 cut(s)	818
BspTNI	GGTCTC	1 cut(s)	765
BsrBI	CCGCTC	1 cut(s)	1071
BsrDI	GCAATG	3 cut(s)	751, 1117, 1170
BsrI	ACTGG	5 cut(s)	588, 730, 955, 1117, 1168
BssECI	CCNNGG	2 cut(s)	242, 928
BssMI	GATC	2 cut(s)	34, 728
BssSI	CACGAG	1 cut(s)	934
Bst2BI	CACGAG	1 cut(s)	934
Bst2UI	CCWGG	2 cut(s)	126, 384
Bst4CI	ACNGT	2 cut(s)	246, 254
Bst6I	CTCTTC	2 cut(s)	5, 1005
BstC8I	GCNNGC	1 cut(s)	925
BstDEI	CTNAG	9 cut(s)	5, 150, 411, 453, 552, 766, 789, 1074, 1125
BstDSI	CCRYGG	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	869
BstKTI	GATC	2 cut(s)	37, 731
BstMAI	GTCTC	1 cut(s)	765
BstMBI	GATC	2 cut(s)	34, 728
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstNI	CCWGG	2 cut(s)	126, 384
BstSCI	CCNGG	4 cut(s)	124, 382, 927, 928
BstSLI	GKGCMC	1 cut(s)	935
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	1113
BstX2I	RGATCY	1 cut(s)	728
BstYI	RGATCY	1 cut(s)	728
BtgI	CCRYGG	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	869
BtsIMutI	CAGTG	3 cut(s)	124, 259, 581
BveI	ACCTGC	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	925
CaiI	CAGNNNCTG	1 cut(s)	551
Cfr13I	GGNCC	4 cut(s)	237, 246, 380, 573
Cfr9I	CCCGGG	1 cut(s)	928
Csp6I	GTAC	1 cut(s)	958
CviAII	CATG	1 cut(s)	815
CviQI	GTAC	1 cut(s)	958
DdeI	CTNAG	9 cut(s)	5, 150, 411, 453, 552, 766, 789, 1074, 1125
DpnI	GATC	2 cut(s)	36, 730
DpnII	GATC	2 cut(s)	34, 728
Eam1104I	CTCTTC	2 cut(s)	5, 1005
EarI	CTCTTC	2 cut(s)	5, 1005
Eco24I	GRGCYC	2 cut(s)	185, 701
Eco31I	GGTCTC	1 cut(s)	765
Eco47I	GGWCC	4 cut(s)	237, 246, 380, 573
Eco88I	CYCGRG	1 cut(s)	928
EcoO109I	RGGNCCY	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	124, 382
EcoT38I	GRGCYC	2 cut(s)	185, 701
FaeI	CATG	1 cut(s)	818
FaiI	YATR	8 cut(s)	305, 462, 662, 798, 816, 840, 1031, 1033
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FaqI	GGGAC	3 cut(s)	102, 223, 329
FatI	CATG	1 cut(s)	814
FauI	CCCGC	1 cut(s)	932
Fnu4HI	GCNGC	2 cut(s)	263, 1069
FokI	GGATG	1 cut(s)	876
FriOI	GRGCYC	2 cut(s)	185, 701
Fsp4HI	GCNGC	2 cut(s)	263, 1069
FspBI	CTAG	4 cut(s)	197, 497, 741, 771
GluI	GCNGC	2 cut(s)	263, 1069
GsaI	CCCAGC	2 cut(s)	75, 277
HapII	CCGG	2 cut(s)	571, 929
Hin1II	CATG	1 cut(s)	818
HinfI	GANTC	8 cut(s)	164, 170, 308, 407, 536, 554, 587, 1139
HpaII	CCGG	2 cut(s)	571, 929
HphI	GGTGA	3 cut(s)	429, 860, 1052
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	9 cut(s)	30, 79, 169, 358, 514, 790, 1075, 1126, 1144
Hpy188III	TCNNGA	5 cut(s)	197, 497, 648, 976, 1136
Hpy8I	GTNNAC	1 cut(s)	581
HpyAV	CCTTC	2 cut(s)	25, 496
HpyCH4III	ACNGT	2 cut(s)	246, 254
HpyCH4V	TGCA	4 cut(s)	464, 855, 1056, 1110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpyF3I	CTNAG	9 cut(s)	5, 150, 411, 453, 552, 766, 789, 1074, 1125
Hsp92II	CATG	1 cut(s)	818
Kzo9I	GATC	2 cut(s)	34, 728
LmnI	GCTCC	3 cut(s)	180, 270, 696
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	3 cut(s)	58, 309, 1176
MaeI	CTAG	4 cut(s)	197, 497, 741, 771
MaeIII	GTNAC	3 cut(s)	848, 866, 995
MalI	GATC	2 cut(s)	36, 730
MbiI	CCGCTC	1 cut(s)	1071
MboI	GATC	2 cut(s)	34, 728
MboII	GAAGA	3 cut(s)	22, 1022, 1113
MfeI	CAATTG	1 cut(s)	60
MflI	RGATCY	1 cut(s)	728
MhlI	GDGCHC	3 cut(s)	185, 701, 935
MlyI	GAGTC	2 cut(s)	563, 1148
MmeI	TCCRAC	1 cut(s)	273
MseI	TTAA	6 cut(s)	158, 396, 620, 630, 671, 1085
MslI	CAYNNNNRTG	2 cut(s)	716, 873
MspI	CCGG	2 cut(s)	571, 929
MspR9I	CCNGG	4 cut(s)	126, 384, 929, 930
MunI	CAATTG	1 cut(s)	60
MvaI	CCWGG	2 cut(s)	126, 384
MwoI	GCNNNNNNNGC	1 cut(s)	279
NciI	CCSGG	2 cut(s)	929, 930
NdeII	GATC	2 cut(s)	34, 728
NlaIII	CATG	1 cut(s)	818
NlaIV	GGNNCC	4 cut(s)	182, 239, 698, 820
NmuCI	GTSAC	2 cut(s)	848, 866
PfeI	GAWTC	6 cut(s)	164, 170, 308, 407, 536, 587
PflMI	CCANNNNNTGG	1 cut(s)	689
PkrI	GCNGC	2 cut(s)	264, 1070
PleI	GAGTC	2 cut(s)	562, 1147
PpsI	GAGTC	2 cut(s)	562, 1147
PpuMI	RGGWCCY	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	124, 382
PspFI	CCCAGC	2 cut(s)	71, 273
PspGI	CCWGG	2 cut(s)	124, 382
PspN4I	GGNNCC	4 cut(s)	182, 239, 698, 820
PspPI	GGNCC	4 cut(s)	237, 246, 380, 573
PspPPI	RGGWCCY	1 cut(s)	237
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	728
RsaI	GTAC	1 cut(s)	959
RsaNI	GTAC	1 cut(s)	958
RseI	CAYNNNNRTG	2 cut(s)	716, 873
SaqAI	TTAA	6 cut(s)	158, 396, 620, 630, 671, 1085
SatI	GCNGC	2 cut(s)	263, 1069
Sau3AI	GATC	2 cut(s)	34, 728
Sau96I	GGNCC	4 cut(s)	237, 246, 380, 573
SchI	GAGTC	2 cut(s)	563, 1148
ScrFI	CCNGG	4 cut(s)	126, 384, 929, 930
SduI	GDGCHC	3 cut(s)	185, 701, 935
SfaNI	GCATC	3 cut(s)	58, 309, 1176
SinI	GGWCC	4 cut(s)	237, 246, 380, 573
SmaI	CCCGGG	1 cut(s)	930
SmiMI	CAYNNNNRTG	2 cut(s)	716, 873
SmlI	CTYRAG	4 cut(s)	295, 880, 976, 1136
SmoI	CTYRAG	4 cut(s)	295, 880, 976, 1136
SrfI	GCCCGGGC	1 cut(s)	930
SsiI	CCGC	2 cut(s)	925, 1069
SspMI	CTAG	4 cut(s)	197, 497, 741, 771
StyD4I	CCNGG	4 cut(s)	124, 382, 927, 928
TaaI	ACNGT	2 cut(s)	246, 254
TauI	GCSGC	1 cut(s)	1071
TfiI	GAWTC	6 cut(s)	164, 170, 308, 407, 536, 587
Tru1I	TTAA	6 cut(s)	158, 396, 620, 630, 671, 1085
Tru9I	TTAA	6 cut(s)	158, 396, 620, 630, 671, 1085
TscAI	CASTG	3 cut(s)	124, 259, 588
TseFI	GTSAC	2 cut(s)	848, 866
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	2 cut(s)	848, 866
TspDTI	ATGAA	2 cut(s)	342, 734
TspMI	CCCGGG	1 cut(s)	928
TspRI	CASTG	3 cut(s)	124, 259, 588
Van91I	CCANNNNNTGG	1 cut(s)	689
VpaK11BI	GGWCC	4 cut(s)	237, 246, 380, 573
XapI	RAATTY	4 cut(s)	217, 652, 703, 946
XbaI	TCTAGA	2 cut(s)	196, 496
XcmI	CCANNNNNNNNNTGG	2 cut(s)	686, 722
XmaI	CCCGGG	1 cut(s)	928
XspI	CTAG	4 cut(s)	197, 497, 741, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.