Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006870

Physical Location & Seq

Genomic Coordinates Forward (+)

4218786 .. 4221077

Gene Structure 2292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTCGAAAGCTACCATAGAACTCGATTTCCTCGGACTTGAGAAGAAACAAACCAACAACGCTCCTAAGCCTAAGTTCCAGAAATTTCTCGATCGCCGTCGTAGTTTCCGAGATATTCAAGGTGCGATTTCGAAAATCGATCCGGAGATTATCAAATCGCTGTTAGCTTCCACTGGAAACAATTCCGATTCATCGGCTAAATCTCGTTCGGTTCCGTCTACTCCGAGGGAAGATCAGCCTCAGATCCCGATTTCTCCGGTCCACGCGTCTCTCGCCAGGTCTAGTACCGAACTCGTTTCGGGAACTGTTCCTATGACGATTTTCTACAATGGAAGTGTTTCAGTTTTCCAAGTGTCTCGTAACAAAGCTGGTGAAATTATGAAGGTCGCTAATGAAGCAGCATCTAAGAAAGACGAGTCGTCGATGGAGACAGATCTTTCGGTAATTCTTCCGACCACTCTAAGACCAAAGCTCTTTGGCCAGAATCTAGAAGGAGATCTTCCCATCGCAAGGAGAAAGTCACTGCAACGTTTTCTCGAGAAGCGCAAGGAGAGATTAGTATCAACATCTCCTTACTATCCGACATCGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010033 GO:0010112 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032101 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045088 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

197

Amino Acids

21.81

Weight (kDa)

9.9

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	102 - 131	7.2e-10	tify domain
Jas_motif	PF09425	168 - 193	6.5e-15	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220
fragaria_vesca	FvH4_4g23000 FvH4_4g23000
malus_domestica	MD13G1127100.v1.1 MD16G1127400.v1.1
prunus_persica	Prupe.1G218500_v2.0.a1
pyrus_communis	pycom13g11020 pycom16g10820
rosa_chinensis	RchiOBHm_Chr4g0429271
rosa_laevigata	RLG00000007085
rosa_multiflora	Rmu_sc0000054.1_g000018 Rmu_sc0036209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370890
rosa_rugosa	Rorug04G0234600 Rorug04G0234700
rosa_samantha	Rh4AG290300 Rh4BG296000 Rh4CG311800 Rh4DG293100
rosa_wichuraiana	Rw4G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	218
AccII	CGCG	1 cut(s)	266
AccIII	TCCGGA	1 cut(s)	142
AclI	AACGTT	1 cut(s)	529
AclWI	GGATC	2 cut(s)	134, 238
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	83
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	510
AflIII	ACRYGT	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	119
AhdI	GACNNNNNGTC	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	275
AloI	GAACNNNNNNTCC	2 cut(s)	12, 44
AluBI	AGCT	4 cut(s)	11, 167, 368, 472
AluI	AGCT	4 cut(s)	11, 167, 368, 472
Alw26I	GTCTC	3 cut(s)	273, 360, 422
AlwI	GGATC	2 cut(s)	134, 238
Ama87I	CYCGRG	1 cut(s)	536
Aor13HI	TCCGGA	1 cut(s)	142
AoxI	GGCC	2 cut(s)	478, 588
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	83
ArsI	GACNNNNNNTTYG	2 cut(s)	421, 453
Asp700I	GAANNNNTTC	2 cut(s)	181, 337
AspLEI	GCGC	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	383
AsuII	TTCGAA	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	259
BalI	TGGCCA	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	410
BccI	CCATC	2 cut(s)	418, 512
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	277
BcoDI	GTCTC	3 cut(s)	273, 360, 422
BfaI	CTAG	2 cut(s)	282, 488
BglII	AGATCT	2 cut(s)	433, 496
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	259
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	410
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	559
BsaJI	CCNNGG	2 cut(s)	31, 224
BsaWI	WCCGGW	2 cut(s)	142, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse1I	ACTGG	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	559
BseAI	TCCGGA	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	277
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	31, 224
BseJI	GATNNNNATC	1 cut(s)	559
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseMII	CTCAG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	480, 590
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	2 cut(s)	143, 257
BslI	CCNNNNNNNGG	1 cut(s)	510
BsmAI	GTCTC	3 cut(s)	273, 360, 422
BsmBI	CGTCTC	1 cut(s)	273
BsnI	GGCC	2 cut(s)	480, 590
BsoBI	CYCGRG	1 cut(s)	536
Bsp119I	TTCGAA	1 cut(s)	131
Bsp13I	TCCGGA	1 cut(s)	142
Bsp143I	GATC	6 cut(s)	91, 139, 232, 243, 433, 496
BspANI	GGCC	2 cut(s)	480, 590
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	213
BspPI	GGATC	2 cut(s)	134, 238
BspT104I	TTCGAA	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	31, 224
BssMI	GATC	6 cut(s)	91, 139, 232, 243, 433, 496
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	131
BstDEI	CTNAG	5 cut(s)	66, 72, 240, 405, 461
BstFNI	CGCG	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	6 cut(s)	94, 142, 235, 246, 436, 499
BstMAI	GTCTC	3 cut(s)	273, 360, 422
BstMBI	GATC	6 cut(s)	91, 139, 232, 243, 433, 496
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 395
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	275
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	410
BstX2I	RGATCY	3 cut(s)	243, 433, 496
BstYI	RGATCY	3 cut(s)	243, 433, 496
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	480, 590
BsuTUI	ATCGAT	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	490
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	2 cut(s)	171, 521
CfoI	GCGC	1 cut(s)	546
Cfr13I	GGNCC	1 cut(s)	259
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	285
CviJI	RGCY	9 cut(s)	11, 70, 167, 197, 238, 368, 472, 480, 590
CviKI_1	RGCY	9 cut(s)	11, 70, 167, 197, 238, 368, 472, 480, 590
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	5 cut(s)	66, 72, 240, 405, 461
DpnI	GATC	6 cut(s)	93, 141, 234, 245, 435, 498
DpnII	GATC	6 cut(s)	91, 139, 232, 243, 433, 496
DriI	GACNNNNNGTC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	478
Eam1105I	GACNNNNNGTC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	273
FaiI	YATR	3 cut(s)	17, 314, 380
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FblI	GTMKAC	1 cut(s)	218
Fnu4HI	GCNGC	1 cut(s)	399
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	2 cut(s)	282, 488
GlaI	GCGC	1 cut(s)	545
GluI	GCNGC	1 cut(s)	399
HaeIII	GGCC	2 cut(s)	480, 590
HapII	CCGG	2 cut(s)	143, 257
HgaI	GACGC	1 cut(s)	255
HhaI	GCGC	1 cut(s)	546
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HinfI	GANTC	3 cut(s)	188, 416, 484
HpaII	CCGG	2 cut(s)	143, 257
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	219, 262
Hpy188I	TCNGA	7 cut(s)	35, 110, 187, 225, 243, 453, 582
Hpy188III	TCNNGA	8 cut(s)	79, 89, 143, 247, 300, 488, 536, 538
Hpy8I	GTNNAC	2 cut(s)	219, 262
Hpy99I	CGWCG	2 cut(s)	102, 424
HpyAV	CCTTC	2 cut(s)	376, 485
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	529
HpyCH4V	TGCA	1 cut(s)	526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 395
HpyF3I	CTNAG	5 cut(s)	66, 72, 240, 405, 461
HpySE526I	ACGT	1 cut(s)	529
HspAI	GCGC	1 cut(s)	544
Kpn2I	TCCGGA	1 cut(s)	142
Kzo9I	GATC	6 cut(s)	91, 139, 232, 243, 433, 496
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	8 cut(s)	92, 156, 159, 262, 270, 289, 354, 494
Lsp1109I	GCAGC	1 cut(s)	410
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	2 cut(s)	282, 488
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	2 cut(s)	359, 519
MalI	GATC	6 cut(s)	93, 141, 234, 245, 435, 498
MboI	GATC	6 cut(s)	91, 139, 232, 243, 433, 496
MboII	GAAGA	4 cut(s)	55, 242, 440, 491
MflI	RGATCY	3 cut(s)	243, 433, 496
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	4 cut(s)	83, 181, 375, 444
MluI	ACGCGT	1 cut(s)	264
MluNI	TGGCCA	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	3 cut(s)	41, 219, 249
Mox20I	TGGCCA	1 cut(s)	480
MroI	TCCGGA	1 cut(s)	142
MroXI	GAANNNNTTC	2 cut(s)	181, 337
MscI	TGGCCA	1 cut(s)	480
Msp20I	TGGCCA	1 cut(s)	480
MspI	CCGG	2 cut(s)	143, 257
MspR9I	CCNGG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	277
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	272, 395
NdeII	GATC	6 cut(s)	91, 139, 232, 243, 433, 496
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	519
NspV	TTCGAA	1 cut(s)	131
PaeR7I	CTCGAG	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PdmI	GAANNNNTTC	2 cut(s)	181, 337
PfeI	GAWTC	2 cut(s)	188, 484
PkrI	GCNGC	1 cut(s)	400
Ple19I	CGATCG	1 cut(s)	94
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Psp1406I	AACGTT	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	259
PsuI	RGATCY	3 cut(s)	243, 433, 496
PvuI	CGATCG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	6 cut(s)	91, 139, 232, 243, 433, 496
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	277
SetI	ASST	8 cut(s)	13, 124, 169, 281, 370, 387, 474, 532
SfaNI	GCATC	1 cut(s)	410
Sfr274I	CTCGAG	1 cut(s)	536
SfuI	TTCGAA	1 cut(s)	131
SinI	GGWCC	1 cut(s)	259
SlaI	CTCGAG	1 cut(s)	536
SmlI	CTYRAG	2 cut(s)	38, 536
SmoI	CTYRAG	2 cut(s)	38, 536
Sse9I	AATT	4 cut(s)	83, 181, 375, 444
SspMI	CTAG	2 cut(s)	282, 488
StyD4I	CCNGG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	7 cut(s)	5, 24, 90, 131, 138, 422, 537
TasI	AATT	4 cut(s)	83, 181, 375, 444
TfiI	GAWTC	2 cut(s)	188, 484
TscAI	CASTG	2 cut(s)	178, 528
TseFI	GTSAC	1 cut(s)	519
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	519
TspDTI	ATGAA	3 cut(s)	180, 395, 408
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	178, 528
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	1 cut(s)	83
XbaI	TCTAGA	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	218
XmnI	GAANNNNTTC	2 cut(s)	181, 337
XspI	CTAG	2 cut(s)	282, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.