Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006870

Physical Location & Seq

Genomic Coordinates Reverse (-)

51468940 .. 51472210

Gene Structure 3271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG293100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTACACACCGGCCGCGGCAACCGTCGAGCTCGATTTCTTGGGAGTCGGGACGACGACGATTATGGATCAGCACCACCACAATCAGCAGCGTGGTGGTGGTGGTGACACCTTCTCTACTGACTTGCCCAAATCTCCGTTCCAGAAGTTCCTCGAACGCGGAAGAAGCTTCCGAGGAATCCAGGCCCGAGAAGTGATTCCTAATCTTCTCAGTTCTGAAGTTCTGAAATCCATGATTGCGGCCAGGAAATCCGTGGCTGCGGCTCCGGAGAATTCCCCTGAAAAACCAAAAGCAAAGCCTATGACGATTTTCTACGGCGGAAGCGTCTCTGTTTTCGACGTCACTCCGGACAAGTTTGAGAGCATAGTGAAGCTTGCCATGGAAGAGAAATTCAAAGCTGCTGGAGCTGCAGATCAACCACTGGAGCCAAAACAACAACAGCTGGTGAATGTTGAGGCTCCTCTCAATGAAGGTAGGTTCTGTAATTTCACTTTGCATTTACATGTTAGATTTCTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010033 GO:0010112 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032101 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045088 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

173

Amino Acids

19.09

Weight (kDa)

7.89

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	96 - 126	5.3e-11	tify domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220
fragaria_vesca	FvH4_4g23000 FvH4_4g23000
malus_domestica	MD13G1127100.v1.1 MD16G1127400.v1.1
prunus_persica	Prupe.1G218500_v2.0.a1
pyrus_communis	pycom13g11020 pycom16g10820
rosa_chinensis	RchiOBHm_Chr4g0429271
rosa_laevigata	RLG00000007085
rosa_multiflora	Rmu_sc0000054.1_g000018 Rmu_sc0036209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370890
rosa_rugosa	Rorug04G0234600 Rorug04G0234700
rosa_samantha	Rh4AG290300 Rh4BG296000 Rh4CG311800 Rh4DG293100
rosa_wichuraiana	Rw4G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
AccII	CGCG	2 cut(s)	17, 159
AccIII	TCCGGA	2 cut(s)	265, 346
AciI	CCGC	6 cut(s)	15, 17, 159, 239, 260, 318
AclWI	GGATC	1 cut(s)	75
AcoI	YGGCCR	2 cut(s)	12, 240
AcsI	RAATTY	2 cut(s)	271, 389
AcuI	CTGAAG	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	2 cut(s)	180, 242
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	6 cut(s)	31, 168, 373, 398, 407, 442
AluI	AGCT	6 cut(s)	31, 168, 373, 398, 407, 442
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	331
AlwI	GGATC	1 cut(s)	75
Ama87I	CYCGRG	1 cut(s)	186
Aor13HI	TCCGGA	2 cut(s)	265, 346
AoxI	GGCC	3 cut(s)	12, 183, 240
ApeKI	GCWGC	4 cut(s)	88, 257, 398, 407
ApoI	RAATTY	2 cut(s)	271, 389
Asp700I	GAANNNNTTC	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	116, 457
AvaI	CYCGRG	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	100, 244, 385, 394
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	2 cut(s)	182, 244
BcoDI	GTCTC	1 cut(s)	331
BfmI	CTRYAG	1 cut(s)	408
BisI	GCNGC	8 cut(s)	15, 18, 89, 240, 258, 261, 399, 408
BlsI	GCNGC	8 cut(s)	16, 19, 90, 241, 259, 262, 400, 409
Bme1390I	CCNGG	2 cut(s)	182, 244
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	3 cut(s)	264, 426, 459
BmrFI	CCNGG	2 cut(s)	182, 244
BpmI	CTGGAG	2 cut(s)	423, 443
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	4 cut(s)	15, 172, 252, 378
BsaWI	WCCGGW	2 cut(s)	265, 346
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	426
BseAI	TCCGGA	2 cut(s)	265, 346
BseBI	CCWGG	2 cut(s)	182, 244
BseDI	CCNNGG	4 cut(s)	15, 172, 252, 378
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	450
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	4 cut(s)	100, 244, 385, 394
Bsh1236I	CGCG	2 cut(s)	17, 159
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	14, 185, 242
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	3 cut(s)	11, 266, 347
BslFI	GGGAC	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	331
BsmBI	CGTCTC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	14, 185, 242
BsoBI	CYCGRG	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp13I	TCCGGA	2 cut(s)	265, 346
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	67, 412
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	6 cut(s)	15, 17, 159, 239, 260, 318
BspANI	GGCC	3 cut(s)	14, 185, 242
BspCNI	CTCAG	1 cut(s)	222
BspEI	TCCGGA	2 cut(s)	265, 346
BspFNI	CGCG	2 cut(s)	17, 159
BspLI	GGNNCC	3 cut(s)	264, 426, 459
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	426
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	4 cut(s)	15, 172, 252, 378
BssMI	GATC	2 cut(s)	67, 412
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	182, 244
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	339
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	209
BstDSI	CCRYGG	3 cut(s)	15, 252, 378
BstFNI	CGCG	2 cut(s)	17, 159
BstKTI	GATC	2 cut(s)	70, 415
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	2 cut(s)	67, 412
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 404, 407
BstNI	CCWGG	2 cut(s)	182, 244
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	2 cut(s)	180, 242
BstSFI	CTRYAG	1 cut(s)	408
BstUI	CGCG	2 cut(s)	17, 159
BstV1I	GCAGC	4 cut(s)	100, 244, 385, 394
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	3 cut(s)	14, 185, 242
BtgI	CCRYGG	3 cut(s)	15, 252, 378
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	184
Cfr42I	CCGCGG	1 cut(s)	18
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	232, 379, 503
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	2 cut(s)	69, 414
DpnII	GATC	2 cut(s)	67, 412
EaeI	YGGCCR	2 cut(s)	12, 240
EagI	CGGCCG	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	333
Ecl136II	GAGCTC	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	33
Eco52I	CGGCCG	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	186
EcoICRI	GAGCTC	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	180, 242
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	3 cut(s)	235, 382, 506
FaiI	YATR	6 cut(s)	65, 233, 302, 365, 380, 504
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	3 cut(s)	231, 378, 502
Fnu4HI	GCNGC	8 cut(s)	15, 18, 89, 240, 258, 261, 399, 408
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	8 cut(s)	15, 18, 89, 240, 258, 261, 399, 408
GluI	GCNGC	8 cut(s)	15, 18, 89, 240, 258, 261, 399, 408
GsuI	CTGGAG	2 cut(s)	423, 443
HaeIII	GGCC	3 cut(s)	14, 185, 242
HapII	CCGG	3 cut(s)	11, 266, 347
HgaI	GACGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	235, 382, 506
HindIII	AAGCTT	2 cut(s)	166, 371
HinfI	GANTC	3 cut(s)	45, 177, 196
HpaII	CCGG	3 cut(s)	11, 266, 347
HphI	GGTGA	2 cut(s)	116, 457
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	173, 217, 225
Hpy188III	TCNNGA	4 cut(s)	49, 142, 266, 347
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	4 cut(s)	29, 58, 61, 341
HpyAV	CCTTC	2 cut(s)	121, 464
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	2 cut(s)	410, 496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 404, 407
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	235, 382, 506
Kpn2I	TCCGGA	2 cut(s)	265, 346
KspI	CCGCGG	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	67, 412
LmnI	GCTCC	4 cut(s)	268, 404, 424, 463
Lsp1109I	GCAGC	4 cut(s)	100, 244, 385, 394
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	104, 340
MalI	GATC	2 cut(s)	69, 414
MboI	GATC	2 cut(s)	67, 412
MboII	GAAGA	3 cut(s)	174, 197, 395
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	3 cut(s)	271, 389, 484
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	161, 167, 448, 471
MroI	TCCGGA	2 cut(s)	265, 346
MroXI	GAANNNNTTC	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	2 cut(s)	17, 442
MspI	CCGG	3 cut(s)	11, 266, 347
MspR9I	CCNGG	2 cut(s)	182, 244
MvaI	CCWGG	2 cut(s)	182, 244
MvnI	CGCG	2 cut(s)	17, 159
MwoI	GCNNNNNNNGC	3 cut(s)	165, 404, 407
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	2 cut(s)	67, 412
NlaIII	CATG	3 cut(s)	235, 382, 506
NlaIV	GGNNCC	3 cut(s)	264, 426, 459
NmuCI	GTSAC	2 cut(s)	104, 340
NspI	RCATGY	1 cut(s)	506
PciI	ACATGT	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	177, 196
PkrI	GCNGC	8 cut(s)	16, 19, 90, 241, 259, 262, 400, 409
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PscI	ACATGT	1 cut(s)	502
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	180, 242
PspGI	CCWGG	2 cut(s)	180, 242
PspN4I	GGNNCC	3 cut(s)	264, 426, 459
PspPI	GGNCC	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	501
SacI	GAGCTC	1 cut(s)	33
SacII	CCGCGG	1 cut(s)	18
SatI	GCNGC	8 cut(s)	15, 18, 89, 240, 258, 261, 399, 408
Sau3AI	GATC	2 cut(s)	67, 412
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	2 cut(s)	182, 244
SduI	GDGCHC	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	408
Sfr303I	CCGCGG	1 cut(s)	18
SgrBI	CCGCGG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	3 cut(s)	271, 389, 484
SsiI	CCGC	6 cut(s)	15, 17, 159, 239, 260, 318
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	180, 242
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	4 cut(s)	27, 33, 153, 336
TasI	AATT	3 cut(s)	271, 389, 484
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	4 cut(s)	17, 20, 242, 263
TfiI	GAWTC	2 cut(s)	177, 196
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	2 cut(s)	104, 340
TseI	GCWGC	4 cut(s)	88, 257, 398, 407
Tsp45I	GTSAC	2 cut(s)	104, 340
TspDTI	ATGAA	1 cut(s)	483
TspGWI	ACGGA	2 cut(s)	126, 241
TspRI	CASTG	1 cut(s)	426
XapI	RAATTY	2 cut(s)	271, 389
XceI	RCATGY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	195
ZraI	GACGTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.