Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006870

Physical Location & Seq

Genomic Coordinates Forward (+)

40007380 .. 40008046

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0234600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCAACATGAGTCAACCCTGATGGTGAAGACATATCATGCAAATCATACATGTTCTAGGGTTCATGTCAACTCTATGGTCAAGGAACCTTACCTAACTGAAAAGTTTGTGGATCAGATCAAGCTAAATCCTAATTGGAAAACAGAATCACTTGCACAAACGATGTCAGCGGGTGTAAAGGCTAGGGTATCCATGCAGCAGGCCTATAGAGCTAAGAGGGCAGCCTTGAAGCTGCTTGAAAGGTCCATCATGGAGCAATATGCTAGAGTAAGGGACTATGGATCAGAACTGAAAAGAGTAGATCCTGAAACCACGGTGGACATAAAGTGTGATTTCAATGATGCTAGTAGGTTGCCTGTGTTTAAAAGGATGTACATCTGCCTCGGGGCATTGAAGACTGGTTTTAAAGCTGGATGCAGATCAGTAATCGGGCTGGATGGTTGCCATTTAAAGAGTCCTCATGGTGGACAGCTCCTAACCGTAGTAGGAGTTGATGCAAATAACACCACCTGGGTAGTTGCATATGCTCAAGTTGAGATGGAGAGAACAGACTCTTGGAAATGGTTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010033 GO:0010112 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032101 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045088 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

190

Amino Acids

21.62

Weight (kDa)

9.3

Isoelectric Point (pI)

30.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MULE	PF10551	142 - 190	7e-07	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220
fragaria_vesca	FvH4_4g23000 FvH4_4g23000
malus_domestica	MD13G1127100.v1.1 MD16G1127400.v1.1
prunus_persica	Prupe.1G218500_v2.0.a1
pyrus_communis	pycom13g11020 pycom16g10820
rosa_chinensis	RchiOBHm_Chr4g0429271
rosa_laevigata	RLG00000007085
rosa_multiflora	Rmu_sc0000054.1_g000018 Rmu_sc0036209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370890
rosa_rugosa	Rorug04G0234600 Rorug04G0234700
rosa_samantha	Rh4AG290300 Rh4BG296000 Rh4CG311800 Rh4DG293100
rosa_wichuraiana	Rw4G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	3 cut(s)	120, 289, 296
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	464
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	4 cut(s)	229, 239, 337, 394
AjnI	CCWGG	1 cut(s)	509
AjuI	GAANNNNNNNTTGG	2 cut(s)	538, 570
AluBI	AGCT	5 cut(s)	124, 212, 232, 410, 472
AluI	AGCT	5 cut(s)	124, 212, 232, 410, 472
AlwI	GGATC	3 cut(s)	120, 289, 296
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	3 cut(s)	196, 221, 232
Asp700I	GAANNNNTTC	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	243
BbsI	GAAGAC	2 cut(s)	35, 401
BbvI	GCAGC	3 cut(s)	208, 219, 233
BccI	CCATC	4 cut(s)	16, 254, 431, 532
BciT130I	CCWGG	1 cut(s)	511
BciVI	GTATCC	1 cut(s)	199
BfaI	CTAG	4 cut(s)	57, 183, 264, 345
BfmI	CTRYAG	1 cut(s)	205
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	3 cut(s)	197, 222, 233
BlsI	GCNGC	3 cut(s)	198, 223, 234
Bme1390I	CCNGG	1 cut(s)	511
Bme18I	GGWCC	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	511
BmsI	GCATC	3 cut(s)	331, 404, 484
BpiI	GAAGAC	2 cut(s)	35, 401
BpuEI	CTTGAG	1 cut(s)	513
BsaBI	GATNNNNATC	2 cut(s)	374, 418
BsaJI	CCNNGG	3 cut(s)	312, 382, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	403
Bse8I	GATNNNNATC	2 cut(s)	374, 418
BseBI	CCWGG	1 cut(s)	511
BseDI	CCNNGG	3 cut(s)	312, 382, 510
BseGI	GGATG	3 cut(s)	375, 419, 442
BseJI	GATNNNNATC	2 cut(s)	374, 418
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseNI	ACTGG	1 cut(s)	403
BseXI	GCAGC	3 cut(s)	208, 219, 233
BshFI	GGCC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	383
BslFI	GGGAC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	383
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	5 cut(s)	112, 117, 281, 301, 419
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	3 cut(s)	120, 289, 296
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	3 cut(s)	312, 382, 510
BssMI	GATC	5 cut(s)	112, 117, 281, 301, 419
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	2 cut(s)	316, 481
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	3 cut(s)	375, 419, 442
BstKTI	GATC	5 cut(s)	115, 120, 284, 304, 422
BstMBI	GATC	5 cut(s)	112, 117, 281, 301, 419
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 218
BstNI	CCWGG	1 cut(s)	511
BstNSI	RCATGY	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	509
BstSFI	CTRYAG	1 cut(s)	205
BstV1I	GCAGC	3 cut(s)	208, 219, 233
BstV2I	GAAGAC	2 cut(s)	35, 401
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	3 cut(s)	375, 419, 442
Cac8I	GCNNGC	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	7 cut(s)	8, 38, 51, 65, 193, 250, 461
CviJI	RGCY	9 cut(s)	124, 182, 203, 212, 224, 232, 410, 433, 472
CviKI_1	RGCY	9 cut(s)	124, 182, 203, 212, 224, 232, 410, 433, 472
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	5 cut(s)	114, 119, 283, 303, 421
DpnII	GATC	5 cut(s)	112, 117, 281, 301, 419
DraI	TTTAAA	3 cut(s)	364, 406, 450
Eco147I	AGGCCT	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	509
FaeI	CATG	7 cut(s)	11, 41, 54, 68, 196, 253, 464
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	7 cut(s)	7, 37, 50, 64, 192, 249, 460
FauI	CCCGC	1 cut(s)	163
FauNDI	CATATG	1 cut(s)	523
Fnu4HI	GCNGC	3 cut(s)	197, 222, 233
FokI	GGATG	3 cut(s)	382, 426, 449
Fsp4HI	GCNGC	3 cut(s)	197, 222, 233
FspBI	CTAG	4 cut(s)	57, 183, 264, 345
GluI	GCNGC	3 cut(s)	197, 222, 233
HaeIII	GGCC	1 cut(s)	203
Hin1II	CATG	7 cut(s)	11, 41, 54, 68, 196, 253, 464
HincII	GTYRAC	2 cut(s)	15, 70
HindII	GTYRAC	2 cut(s)	15, 70
HinfI	GANTC	4 cut(s)	11, 146, 454, 551
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	4 cut(s)	15, 70, 319, 467
Hpy188I	TCNGA	2 cut(s)	117, 286
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	4 cut(s)	15, 70, 319, 467
HpyCH4III	ACNGT	2 cut(s)	316, 481
HpyCH4V	TGCA	7 cut(s)	4, 41, 155, 196, 417, 497, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 218
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	7 cut(s)	11, 41, 54, 68, 196, 253, 464
Kzo9I	GATC	5 cut(s)	112, 117, 281, 301, 419
LmnI	GCTCC	2 cut(s)	253, 477
LpnPI	CCDG	9 cut(s)	32, 185, 318, 369, 384, 396, 419, 496, 523
Lsp1109I	GCAGC	3 cut(s)	208, 219, 233
LweI	GCATC	3 cut(s)	331, 404, 484
MaeI	CTAG	4 cut(s)	57, 183, 264, 345
MalI	GATC	5 cut(s)	114, 119, 283, 303, 421
MboI	GATC	5 cut(s)	112, 117, 281, 301, 419
MboII	GAAGA	2 cut(s)	40, 406
MflI	RGATCY	1 cut(s)	301
MluCI	AATT	1 cut(s)	133
MlyI	GAGTC	3 cut(s)	20, 463, 545
MnlI	CCTC	3 cut(s)	210, 392, 468
MroXI	GAANNNNTTC	1 cut(s)	563
MseI	TTAA	3 cut(s)	363, 405, 449
MspA1I	CMGCKG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	511
MwoI	GCNNNNNNNGC	2 cut(s)	209, 218
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	5 cut(s)	112, 117, 281, 301, 419
NlaIII	CATG	7 cut(s)	11, 41, 54, 68, 196, 253, 464
NlaIV	GGNNCC	1 cut(s)	87
NspI	RCATGY	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	203
PciI	ACATGT	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	563
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	198, 223, 234
PleI	GAGTC	3 cut(s)	19, 462, 545
PpsI	GAGTC	3 cut(s)	19, 462, 545
PscI	ACATGT	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SaqAI	TTAA	3 cut(s)	363, 405, 449
SatI	GCNGC	3 cut(s)	197, 222, 233
Sau3AI	GATC	5 cut(s)	112, 117, 281, 301, 419
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	3 cut(s)	20, 463, 545
ScrFI	CCNGG	1 cut(s)	511
SfaNI	GCATC	3 cut(s)	331, 404, 484
SfcI	CTRYAG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	528
SmoI	CTYRAG	1 cut(s)	528
Sse9I	AATT	1 cut(s)	133
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	4 cut(s)	57, 183, 264, 345
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	509
TaaI	ACNGT	2 cut(s)	316, 481
TasI	AATT	1 cut(s)	133
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	3 cut(s)	363, 405, 449
Tru9I	TTAA	3 cut(s)	363, 405, 449
TseI	GCWGC	3 cut(s)	196, 221, 232
TspDTI	ATGAA	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	243
XceI	RCATGY	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	563
XspI	CTAG	4 cut(s)	57, 183, 264, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.