Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036209.1

Orthogroup ID

OG0006870

Physical Location & Seq

Genomic Coordinates Reverse (-)

217 .. 1519

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036209.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggatcagcaccaccacaatcagcagcgtggtggtggtggtgacaccttctctactgacttgcccaaatctccgttccagaagttcctcgaacgcggaagaagcttccgaggaatccaggcccgagaagtgattcctaatcttctcagttctgaagttctgaaatccatgattgcggccaggaaatccgtggctgcggctctggagaattcccctgaaaaaccaaaagcaaagcctatgacgattttctacggcggaagcgtctctgttttcgacgtcactccggacaagtttgagagcatagtgaagcttgccatggaagagaaattcaaagctgctggagctgcagatcaaccactggagccaaaacaacaacagctggtgaatgttgaggctcctctcaatgaagatctgccaattgctcgtacaaaatcactccaaagatttttggagaagcgtaaacagaggttgaacacggtgtccccatatggttgtcacaccaccaactactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010033 GO:0010112 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032101 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045088 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

170

Amino Acids

18.98

Weight (kDa)

9.49

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220
fragaria_vesca	FvH4_4g23000 FvH4_4g23000
malus_domestica	MD13G1127100.v1.1 MD16G1127400.v1.1
prunus_persica	Prupe.1G218500_v2.0.a1
pyrus_communis	pycom13g11020 pycom16g10820
rosa_chinensis	RchiOBHm_Chr4g0429271
rosa_laevigata	RLG00000007085
rosa_multiflora	Rmu_sc0000054.1_g000018 Rmu_sc0036209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370890
rosa_rugosa	Rorug04G0234600 Rorug04G0234700
rosa_samantha	Rh4AG290300 Rh4BG296000 Rh4CG311800 Rh4DG293100
rosa_wichuraiana	Rw4G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccII	CGCG	1 cut(s)	96
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	4 cut(s)	96, 176, 197, 255
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	208, 326
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	331, 472
AjnI	CCWGG	2 cut(s)	117, 179
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	464, 496
AluBI	AGCT	5 cut(s)	105, 310, 335, 344, 379
AluI	AGCT	5 cut(s)	105, 310, 335, 344, 379
Alw26I	GTCTC	1 cut(s)	268
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	123
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	2 cut(s)	120, 177
ApeKI	GCWGC	4 cut(s)	25, 194, 335, 344
ApoI	RAATTY	2 cut(s)	208, 326
Asp700I	GAANNNNTTC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	53, 394
AvaI	CYCGRG	1 cut(s)	123
BbvI	GCAGC	4 cut(s)	37, 181, 322, 331
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	2 cut(s)	119, 181
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	1 cut(s)	511
BfmI	CTRYAG	1 cut(s)	345
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	6 cut(s)	26, 177, 195, 198, 336, 345
BlsI	GCNGC	6 cut(s)	27, 178, 196, 199, 337, 346
Bme1390I	CCNGG	2 cut(s)	119, 181
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	2 cut(s)	363, 396
BmrFI	CCNGG	2 cut(s)	119, 181
BpmI	CTGGAG	3 cut(s)	224, 360, 380
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	109, 189, 315
BsaWI	WCCGGW	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	283
BseBI	CCWGG	2 cut(s)	119, 181
BseDI	CCNNGG	3 cut(s)	109, 189, 315
BseMII	CTCAG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	4 cut(s)	37, 181, 322, 331
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	122, 179
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	268
BsmBI	CGTCTC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	122, 179
BsoBI	CYCGRG	1 cut(s)	123
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	4, 349, 409
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	4 cut(s)	96, 176, 197, 255
BspANI	GGCC	2 cut(s)	122, 179
BspCNI	CTCAG	1 cut(s)	159
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	363, 396
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	3 cut(s)	109, 189, 315
BssMI	GATC	3 cut(s)	4, 349, 409
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	119, 181
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	146
BstDSI	CCRYGG	2 cut(s)	189, 315
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	3 cut(s)	7, 352, 412
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	3 cut(s)	4, 349, 409
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 341, 344
BstNI	CCWGG	2 cut(s)	119, 181
BstSCI	CCNGG	2 cut(s)	117, 179
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	4 cut(s)	37, 181, 322, 331
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	2 cut(s)	122, 179
BtgI	CCRYGG	2 cut(s)	189, 315
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	121
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	2 cut(s)	169, 316
CviQI	GTAC	1 cut(s)	426
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	3 cut(s)	6, 351, 411
DpnII	GATC	3 cut(s)	4, 349, 409
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	117, 179
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	2 cut(s)	172, 319
FaiI	YATR	6 cut(s)	170, 239, 302, 317, 487, 489
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	2 cut(s)	168, 315
FauNDI	CATATG	1 cut(s)	487
Fnu4HI	GCNGC	6 cut(s)	26, 177, 195, 198, 336, 345
Fsp4HI	GCNGC	6 cut(s)	26, 177, 195, 198, 336, 345
FspBI	CTAG	1 cut(s)	511
GluI	GCNGC	6 cut(s)	26, 177, 195, 198, 336, 345
GsuI	CTGGAG	3 cut(s)	224, 360, 380
HaeIII	GGCC	2 cut(s)	122, 179
HapII	CCGG	1 cut(s)	284
HgaI	GACGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	172, 319
HindIII	AAGCTT	2 cut(s)	103, 308
HinfI	GANTC	2 cut(s)	114, 133
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	2 cut(s)	53, 394
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	3 cut(s)	110, 154, 162
Hpy188III	TCNNGA	3 cut(s)	79, 203, 284
Hpy8I	GTNNAC	1 cut(s)	461
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 341, 344
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	172, 319
Kpn2I	TCCGGA	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	4, 349, 409
LmnI	GCTCC	3 cut(s)	341, 361, 400
Lsp1109I	GCAGC	4 cut(s)	37, 181, 322, 331
MaeI	CTAG	1 cut(s)	511
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	41, 277, 494
MalI	GATC	3 cut(s)	6, 351, 411
MboI	GATC	3 cut(s)	4, 349, 409
MboII	GAAGA	4 cut(s)	111, 134, 332, 419
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	409
MluCI	AATT	3 cut(s)	208, 326, 417
MnlI	CCTC	5 cut(s)	98, 104, 385, 408, 459
MroI	TCCGGA	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	119, 181
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	2 cut(s)	119, 181
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	102, 341, 344
NcoI	CCATGG	1 cut(s)	315
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	3 cut(s)	4, 349, 409
NlaIII	CATG	2 cut(s)	172, 319
NlaIV	GGNNCC	2 cut(s)	363, 396
NmuCI	GTSAC	3 cut(s)	41, 277, 494
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	114, 133
PkrI	GCNGC	6 cut(s)	27, 178, 196, 199, 337, 346
Psp6I	CCWGG	2 cut(s)	117, 179
PspGI	CCWGG	2 cut(s)	117, 179
PspN4I	GGNNCC	2 cut(s)	363, 396
PspPI	GGNCC	1 cut(s)	121
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SatI	GCNGC	6 cut(s)	26, 177, 195, 198, 336, 345
Sau3AI	GATC	3 cut(s)	4, 349, 409
Sau96I	GGNCC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	119, 181
SetI	ASST	8 cut(s)	50, 107, 279, 312, 337, 346, 381, 470
SfcI	CTRYAG	1 cut(s)	345
Sse9I	AATT	3 cut(s)	208, 326, 417
SsiI	CCGC	4 cut(s)	96, 176, 197, 255
SspMI	CTAG	1 cut(s)	511
StyD4I	CCNGG	2 cut(s)	117, 179
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	90, 273
TasI	AATT	3 cut(s)	208, 326, 417
TauI	GCSGC	2 cut(s)	179, 200
TfiI	GAWTC	2 cut(s)	114, 133
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	3 cut(s)	41, 277, 494
TseI	GCWGC	4 cut(s)	25, 194, 335, 344
Tsp45I	GTSAC	3 cut(s)	41, 277, 494
TspDTI	ATGAA	1 cut(s)	420
TspGWI	ACGGA	2 cut(s)	63, 178
TspRI	CASTG	1 cut(s)	363
XapI	RAATTY	2 cut(s)	208, 326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	1 cut(s)	511
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.