Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006870

Physical Location & Seq

Genomic Coordinates Forward (+)

9515820 .. 9518542

Gene Structure 2723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1127100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTCCAGAGCCACCGTCGAGCTCGACTTCTTCGGCATGGATCAGCACCACCGGGAGGCCGCCTCCTACTCCTCCAAATCCCAATTCCAGAAATTCCTCCACCGACCCAGAAGCGTCCGAGGCATTCACACCGCCATGTCCAAGATCAACCCCGAGGTCTTCAAGTCCGTCATCGCTTCCGGCAATGCCAGTCCCAGCATTCCAAATCCGAGGAAATCGTTTTCGGTGCCGTCGAGCCCCAAGGTGGAGCAAGTCCTGTTTCCCTGTTTGCCACTCTACGTTACCACCGCCGTTTCCGATTCCTCTGTCGCGTCTGCAACTTCCGAGAGCCTCCAGGAAACAACGCCAATGACGATTTTCTACAACGGCACCGTCTCTGTTTTCAATGTCCCTCTCGACAAGGCGGATAGCATATTGAAACTTGCTTTGGAAGGAAACTCCCGCAAAGCTGCCGAAGCAGCGTTACCCGTCGATCCAAAACTTGCTCTTCATCCAAGTGAGCAGCAGCAGCAACTTGTGGATCCTCTTAGCGAATATCTACCAATTACTCGTTCTAAGTCATTGCAGAGGTTTCTCGAGAAACGCAAAGAGAGGTTGAATGCGGGTTCTCCATATGCTTACCAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010033 GO:0010112 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032101 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045088 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

210

Amino Acids

23.07

Weight (kDa)

9.32

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	112 - 142	4.3e-12	tify domain
Jas_motif	PF09425	181 - 205	1.6e-11	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220
fragaria_vesca	FvH4_4g23000 FvH4_4g23000
malus_domestica	MD13G1127100.v1.1 MD16G1127400.v1.1
prunus_persica	Prupe.1G218500_v2.0.a1
pyrus_communis	pycom13g11020 pycom16g10820
rosa_chinensis	RchiOBHm_Chr4g0429271
rosa_laevigata	RLG00000007085
rosa_multiflora	Rmu_sc0000054.1_g000018 Rmu_sc0036209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370890
rosa_rugosa	Rorug04G0234600 Rorug04G0234700
rosa_samantha	Rh4AG290300 Rh4BG296000 Rh4CG311800 Rh4DG293100
rosa_wichuraiana	Rw4G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	226, 368
AccII	CGCG	1 cut(s)	311
AciI	CCGC	6 cut(s)	60, 132, 288, 404, 442, 602
AclWI	GGATC	4 cut(s)	48, 467, 515, 528
AcsI	RAATTY	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	55, 244
AgsI	TTSAA	4 cut(s)	163, 385, 418, 598
AjnI	CCWGG	1 cut(s)	333
AjuI	GAANNNNNNNTTGG	6 cut(s)	68, 100, 410, 442, 535, 567
AluBI	AGCT	2 cut(s)	22, 449
AluI	AGCT	2 cut(s)	22, 449
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	4 cut(s)	48, 467, 515, 528
Ama87I	CYCGRG	2 cut(s)	152, 575
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	5 cut(s)	449, 458, 502, 505, 508
ApoI	RAATTY	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	53
AvaI	CYCGRG	2 cut(s)	152, 575
BamHI	GGATCC	1 cut(s)	520
BanI	GGYRCC	2 cut(s)	226, 368
BanII	GRGCYC	2 cut(s)	24, 239
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	5 cut(s)	436, 470, 514, 517, 520
BceAI	ACGGC	3 cut(s)	214, 275, 382
BciT130I	CCWGG	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	379
BisI	GCNGC	6 cut(s)	60, 450, 459, 503, 506, 509
BlsI	GCNGC	6 cut(s)	61, 451, 460, 504, 507, 510
Bme1390I	CCNGG	2 cut(s)	53, 335
BmeT110I	CYCGRG	2 cut(s)	152, 575
BmiI	GGNNCC	3 cut(s)	228, 370, 522
BmrFI	CCNGG	2 cut(s)	53, 335
BpiI	GAAGAC	1 cut(s)	151
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	53
BsaJI	CCNNGG	4 cut(s)	118, 153, 209, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 244
Bse1I	ACTGG	1 cut(s)	189
Bse3DI	GCAATG	2 cut(s)	190, 560
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	4 cut(s)	118, 153, 209, 240
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	2 cut(s)	55, 244
BseMI	GCAATG	2 cut(s)	190, 560
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	61
BseXI	GCAGC	5 cut(s)	436, 470, 514, 517, 520
BseYI	CCCAGC	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	2 cut(s)	226, 368
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	2 cut(s)	152, 575
BsiSI	CCGG	2 cut(s)	52, 180
BslFI	GGGAC	2 cut(s)	177, 374
BslI	CCNNNNNNNGG	2 cut(s)	55, 244
BsmAI	GTCTC	1 cut(s)	379
BsmBI	CGTCTC	1 cut(s)	379
BsmFI	GGGAC	2 cut(s)	177, 374
BsmI	GAATGC	3 cut(s)	123, 198, 604
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	2 cut(s)	152, 575
Bsp1286I	GDGCHC	2 cut(s)	24, 239
Bsp143I	GATC	4 cut(s)	40, 144, 472, 520
BspACI	CCGC	6 cut(s)	60, 132, 288, 404, 442, 602
BspANI	GGCC	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	3 cut(s)	228, 370, 522
BspPI	GGATC	4 cut(s)	48, 467, 515, 528
BspQI	GCTCTTC	1 cut(s)	492
BspT107I	GGYRCC	2 cut(s)	226, 368
BsrDI	GCAATG	2 cut(s)	190, 560
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	4 cut(s)	118, 153, 209, 240
BssMI	GATC	4 cut(s)	40, 144, 472, 520
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	16, 373
Bst6I	CTCTTC	1 cut(s)	492
BstDEI	CTNAG	2 cut(s)	527, 555
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	1 cut(s)	311
BstKTI	GATC	4 cut(s)	43, 147, 475, 523
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	4 cut(s)	40, 144, 472, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 455, 458, 508
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	51, 333
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	5 cut(s)	436, 470, 514, 517, 520
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	59
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	490
CseI	GACGC	2 cut(s)	103, 300
CviAII	CATG	2 cut(s)	37, 136
CviJI	RGCY	6 cut(s)	11, 22, 59, 237, 330, 449
CviKI_1	RGCY	6 cut(s)	11, 22, 59, 237, 330, 449
DdeI	CTNAG	2 cut(s)	527, 555
DpnI	GATC	4 cut(s)	42, 146, 474, 522
DpnII	GATC	4 cut(s)	40, 144, 472, 520
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
EciI	GGCGGA	1 cut(s)	419
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	2 cut(s)	24, 239
Eco53kI	GAGCTC	1 cut(s)	22
Eco88I	CYCGRG	2 cut(s)	152, 575
EcoICRI	GAGCTC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	24, 239
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	379
FaeI	CATG	2 cut(s)	40, 139
FaiI	YATR	5 cut(s)	38, 137, 413, 613, 615
FaqI	GGGAC	2 cut(s)	177, 374
FatI	CATG	2 cut(s)	36, 135
FauI	CCCGC	2 cut(s)	449, 595
FauNDI	CATATG	1 cut(s)	613
Fnu4HI	GCNGC	6 cut(s)	60, 450, 459, 503, 506, 509
FokI	GGATG	1 cut(s)	477
FriOI	GRGCYC	2 cut(s)	24, 239
Fsp4HI	GCNGC	6 cut(s)	60, 450, 459, 503, 506, 509
GluI	GCNGC	6 cut(s)	60, 450, 459, 503, 506, 509
GsaI	CCCAGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	52, 180
HgaI	GACGC	2 cut(s)	103, 300
Hin1II	CATG	2 cut(s)	40, 139
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	2 cut(s)	52, 180
Hpy188I	TCNGA	4 cut(s)	119, 210, 298, 325
Hpy188III	TCNNGA	5 cut(s)	6, 88, 395, 575, 577
Hpy99I	CGWCG	3 cut(s)	20, 235, 473
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	2 cut(s)	16, 373
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	2 cut(s)	317, 565
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 455, 458, 508
HpyF3I	CTNAG	2 cut(s)	527, 555
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	40, 139
Kzo9I	GATC	4 cut(s)	40, 144, 472, 520
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	5 cut(s)	436, 470, 514, 517, 520
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	280, 462
MalI	GATC	4 cut(s)	42, 146, 474, 522
MboI	GATC	4 cut(s)	40, 144, 472, 520
MboII	GAAGA	3 cut(s)	22, 151, 479
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	2 cut(s)	24, 239
MluCI	AATT	3 cut(s)	83, 92, 543
MslI	CAYNNNNRTG	2 cut(s)	134, 495
MspI	CCGG	2 cut(s)	52, 180
MspR9I	CCNGG	2 cut(s)	53, 335
Mva1269I	GAATGC	3 cut(s)	123, 198, 604
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	4 cut(s)	120, 455, 458, 508
NciI	CCSGG	1 cut(s)	53
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	4 cut(s)	40, 144, 472, 520
NlaIII	CATG	2 cut(s)	40, 139
NlaIV	GGNNCC	3 cut(s)	228, 370, 522
PaeR7I	CTCGAG	1 cut(s)	575
PciSI	GCTCTTC	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	2 cut(s)	230, 350
PctI	GAATGC	3 cut(s)	123, 198, 604
PfeI	GAWTC	1 cut(s)	299
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	6 cut(s)	61, 451, 460, 504, 507, 510
Psp124BI	GAGCTC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	3 cut(s)	228, 370, 522
PsuI	RGATCY	1 cut(s)	520
RseI	CAYNNNNRTG	2 cut(s)	134, 495
SacI	GAGCTC	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	492
SatI	GCNGC	6 cut(s)	60, 450, 459, 503, 506, 509
Sau3AI	GATC	4 cut(s)	40, 144, 472, 520
ScrFI	CCNGG	2 cut(s)	53, 335
SduI	GDGCHC	2 cut(s)	24, 239
SetI	ASST	8 cut(s)	24, 159, 246, 282, 451, 572, 596, 629
Sfr274I	CTCGAG	1 cut(s)	575
SlaI	CTCGAG	1 cut(s)	575
SmiMI	CAYNNNNRTG	2 cut(s)	134, 495
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	3 cut(s)	83, 92, 543
SsiI	CCGC	6 cut(s)	60, 132, 288, 404, 442, 602
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	51, 333
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	16, 373
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	6 cut(s)	18, 24, 233, 396, 471, 576
TasI	AATT	3 cut(s)	83, 92, 543
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	299
TseI	GCWGC	5 cut(s)	449, 458, 502, 505, 508
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	1 cut(s)	157
XapI	RAATTY	1 cut(s)	92
XhoI	CTCGAG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.