Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006870

Physical Location & Seq

Genomic Coordinates Reverse (-)

57345598 .. 57349148

Gene Structure 3551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG311800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAAACTCGTGCTCCCTTTAAATTCTCGTTCCTCACGTCACTTTAGAGTCCCACACAACAGTTTCTTCCCGCCTCGCCATTTAAGACGCTCTGAGCTTCTCATCATTCTTCATTTCACAAACAAACTCAAACCGAAACCGAAAACAAGTCAGCAACCAAACATGTACACACCGGCCGCGGCAACCGTCGAGCTCGATTTCTTGGGAGTCGGGACGACGACGATTATGGATCAGCACCACCACAATCAGCAGCGTGGTGGTGGTGGTGACACCTTCTCTACTGACTTGCCCAAATCTCCGTTCCAGAAGTTCCTCGAACGCGGAAGAAGCTTCCGAGGAATCCAGGCCCGAGAAGTGATTCCTAATCTTCTCAGTTCTGAAGTTCTGAAATCCATGATTGCGGCCAGGAAATCCGTGGCTGCGGCTCTGGAGAATTCCCCTGAAAAACCAAAAGCAAAGCCTATGACGATTTTCTACGGAGGAAGCGTCTCTGTTTTCGACGTCACTCCGGACAAGTTTGAGAGCATAGTGAAGCTTGCCATGGAAGAGAAATTCAAAGCTGCTGGAGCTGCAGATCAACCACTGGAGCCAAAACAACAACAGCTGGTGAATGTTGAGGCTCCTCTCAATGAAGGTAGGTTCTGTAATTTCACTTTGCATTTACATGTTAGATTTCTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010033 GO:0010112 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032101 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045088 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

227

Amino Acids

25.53

Weight (kDa)

9.95

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	150 - 180	8.1e-11	tify domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220
fragaria_vesca	FvH4_4g23000 FvH4_4g23000
malus_domestica	MD13G1127100.v1.1 MD16G1127400.v1.1
prunus_persica	Prupe.1G218500_v2.0.a1
pyrus_communis	pycom13g11020 pycom16g10820
rosa_chinensis	RchiOBHm_Chr4g0429271
rosa_laevigata	RLG00000007085
rosa_multiflora	Rmu_sc0000054.1_g000018 Rmu_sc0036209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370890
rosa_rugosa	Rorug04G0234600 Rorug04G0234700
rosa_samantha	Rh4AG290300 Rh4BG296000 Rh4CG311800 Rh4DG293100
rosa_wichuraiana	Rw4G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
AccII	CGCG	2 cut(s)	179, 321
AccIII	TCCGGA	1 cut(s)	508
AciI	CCGC	6 cut(s)	71, 177, 179, 321, 401, 422
AclWI	GGATC	1 cut(s)	237
AcoI	YGGCCR	2 cut(s)	174, 402
AcsI	RAATTY	3 cut(s)	22, 433, 551
AcuI	CTGAAG	1 cut(s)	399
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	1 cut(s)	167
AflIII	ACRYGT	2 cut(s)	162, 664
AgsI	TTSAA	1 cut(s)	556
AjiI	CACGTC	1 cut(s)	38
AjnI	CCWGG	2 cut(s)	342, 404
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	7 cut(s)	97, 193, 330, 535, 560, 569, 604
AluI	AGCT	7 cut(s)	97, 193, 330, 535, 560, 569, 604
Alw21I	GWGCWC	2 cut(s)	15, 195
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	1 cut(s)	237
Ama87I	CYCGRG	1 cut(s)	348
Aor13HI	TCCGGA	1 cut(s)	508
AoxI	GGCC	3 cut(s)	174, 345, 402
ApeKI	GCWGC	4 cut(s)	250, 419, 560, 569
ApoI	RAATTY	3 cut(s)	22, 433, 551
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	278, 619
AvaI	CYCGRG	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	195
BauI	CACGAG	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	15, 195
BbvI	GCAGC	4 cut(s)	262, 406, 547, 556
BciT130I	CCWGG	2 cut(s)	344, 406
BcoDI	GTCTC	1 cut(s)	493
BfmI	CTRYAG	1 cut(s)	570
BisI	GCNGC	8 cut(s)	177, 180, 251, 402, 420, 423, 561, 570
BlsI	GCNGC	8 cut(s)	178, 181, 252, 403, 421, 424, 562, 571
Bme1390I	CCNGG	2 cut(s)	344, 406
BmeT110I	CYCGRG	1 cut(s)	348
BmgBI	CACGTC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	2 cut(s)	588, 621
BmrFI	CCNGG	2 cut(s)	344, 406
BpmI	CTGGAG	3 cut(s)	449, 585, 605
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	4 cut(s)	177, 334, 414, 540
BsaWI	WCCGGW	1 cut(s)	508
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 471, 501
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	588
BseAI	TCCGGA	1 cut(s)	508
BseBI	CCWGG	2 cut(s)	344, 406
BseDI	CCNNGG	4 cut(s)	177, 334, 414, 540
BseMII	CTCAG	2 cut(s)	84, 385
BseNI	ACTGG	1 cut(s)	588
BseRI	GAGGAG	1 cut(s)	612
BseX3I	CGGCCG	1 cut(s)	174
BseXI	GCAGC	4 cut(s)	262, 406, 547, 556
Bsh1236I	CGCG	2 cut(s)	179, 321
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	3 cut(s)	176, 347, 404
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	15, 195
BsiHKCI	CYCGRG	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	173, 509
BslFI	GGGAC	2 cut(s)	35, 226
BsmAI	GTCTC	1 cut(s)	493
BsmBI	CGTCTC	1 cut(s)	493
BsmFI	GGGAC	2 cut(s)	35, 226
BsnI	GGCC	3 cut(s)	176, 347, 404
BsoBI	CYCGRG	1 cut(s)	348
Bsp1286I	GDGCHC	2 cut(s)	15, 195
Bsp13I	TCCGGA	1 cut(s)	508
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	229, 574
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	6 cut(s)	71, 177, 179, 321, 401, 422
BspANI	GGCC	3 cut(s)	176, 347, 404
BspCNI	CTCAG	2 cut(s)	85, 384
BspEI	TCCGGA	1 cut(s)	508
BspFNI	CGCG	2 cut(s)	179, 321
BspLI	GGNNCC	2 cut(s)	588, 621
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	172
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	588
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	4 cut(s)	177, 334, 414, 540
BssMI	GATC	2 cut(s)	229, 574
BssNI	GRCGYC	1 cut(s)	501
BssSI	CACGAG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	540
Bst2BI	CACGAG	1 cut(s)	8
Bst2UI	CCWGG	2 cut(s)	344, 406
Bst4CI	ACNGT	2 cut(s)	62, 187
Bst6I	CTCTTC	1 cut(s)	540
BstACI	GRCGYC	1 cut(s)	501
BstAUI	TGTACA	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	2 cut(s)	93, 371
BstDSI	CCRYGG	3 cut(s)	177, 414, 540
BstFNI	CGCG	2 cut(s)	179, 321
BstKTI	GATC	2 cut(s)	232, 577
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	2 cut(s)	229, 574
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	327, 566, 569
BstNI	CCWGG	2 cut(s)	344, 406
BstNSI	RCATGY	2 cut(s)	166, 668
BstSCI	CCNGG	2 cut(s)	342, 404
BstSFI	CTRYAG	1 cut(s)	570
BstUI	CGCG	2 cut(s)	179, 321
BstV1I	GCAGC	4 cut(s)	262, 406, 547, 556
BstZI	CGGCCG	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	176, 347, 404
BtgI	CCRYGG	3 cut(s)	177, 414, 540
BtrI	CACGTC	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	581
Cac8I	GCNNGC	1 cut(s)	537
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	346
Cfr42I	CCGCGG	1 cut(s)	180
CseI	GACGC	2 cut(s)	96, 475
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	4 cut(s)	163, 394, 541, 665
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	2 cut(s)	93, 371
DpnI	GATC	2 cut(s)	231, 576
DpnII	GATC	2 cut(s)	229, 574
DraI	TTTAAA	1 cut(s)	21
EaeI	YGGCCR	2 cut(s)	174, 402
EagI	CGGCCG	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Ecl136II	GAGCTC	1 cut(s)	193
EclXI	CGGCCG	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	540
Eco24I	GRGCYC	1 cut(s)	195
Eco52I	CGGCCG	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	348
EcoICRI	GAGCTC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	342, 404
EcoT14I	CCWWGG	1 cut(s)	540
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	540
Esp3I	CGTCTC	1 cut(s)	493
FaeI	CATG	4 cut(s)	166, 397, 544, 668
FaiI	YATR	7 cut(s)	164, 227, 395, 464, 527, 542, 666
FaqI	GGGAC	2 cut(s)	35, 226
FatI	CATG	4 cut(s)	162, 393, 540, 664
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	8 cut(s)	177, 180, 251, 402, 420, 423, 561, 570
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	8 cut(s)	177, 180, 251, 402, 420, 423, 561, 570
GluI	GCNGC	8 cut(s)	177, 180, 251, 402, 420, 423, 561, 570
GsuI	CTGGAG	3 cut(s)	449, 585, 605
HaeIII	GGCC	3 cut(s)	176, 347, 404
HapII	CCGG	2 cut(s)	173, 509
HgaI	GACGC	2 cut(s)	96, 475
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	4 cut(s)	166, 397, 544, 668
HindIII	AAGCTT	2 cut(s)	328, 533
HinfI	GANTC	4 cut(s)	48, 207, 339, 358
HpaII	CCGG	2 cut(s)	173, 509
HphI	GGTGA	2 cut(s)	278, 619
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	4 cut(s)	94, 335, 379, 387
Hpy188III	TCNNGA	4 cut(s)	211, 304, 428, 509
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	4 cut(s)	191, 220, 223, 503
HpyAV	CCTTC	2 cut(s)	283, 626
HpyCH4III	ACNGT	2 cut(s)	62, 187
HpyCH4IV	ACGT	2 cut(s)	37, 501
HpyCH4V	TGCA	2 cut(s)	572, 658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	327, 566, 569
HpyF3I	CTNAG	2 cut(s)	93, 371
HpySE526I	ACGT	2 cut(s)	37, 501
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	4 cut(s)	166, 397, 544, 668
Kpn2I	TCCGGA	1 cut(s)	508
KspI	CCGCGG	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	229, 574
LmnI	GCTCC	4 cut(s)	18, 566, 586, 625
Lsp1109I	GCAGC	4 cut(s)	262, 406, 547, 556
MaeII	ACGT	2 cut(s)	37, 501
MaeIII	GTNAC	3 cut(s)	38, 266, 502
MalI	GATC	2 cut(s)	231, 576
MboI	GATC	2 cut(s)	229, 574
MboII	GAAGA	5 cut(s)	58, 101, 336, 359, 557
MhlI	GDGCHC	2 cut(s)	15, 195
MluCI	AATT	4 cut(s)	22, 433, 551, 646
MlyI	GAGTC	2 cut(s)	57, 216
MnlI	CCTC	7 cut(s)	43, 84, 323, 329, 473, 610, 633
MroI	TCCGGA	1 cut(s)	508
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	2 cut(s)	20, 83
MslI	CAYNNNNRTG	1 cut(s)	663
MspA1I	CMGCKG	2 cut(s)	179, 604
MspI	CCGG	2 cut(s)	173, 509
MspR9I	CCNGG	2 cut(s)	344, 406
MvaI	CCWGG	2 cut(s)	344, 406
MvnI	CGCG	2 cut(s)	179, 321
MwoI	GCNNNNNNNGC	3 cut(s)	327, 566, 569
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	2 cut(s)	229, 574
NlaIII	CATG	4 cut(s)	166, 397, 544, 668
NlaIV	GGNNCC	2 cut(s)	588, 621
NmuCI	GTSAC	3 cut(s)	38, 266, 502
NspI	RCATGY	2 cut(s)	166, 668
PciI	ACATGT	2 cut(s)	162, 664
PcsI	WCGNNNNNNNCGW	2 cut(s)	34, 483
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	339, 358
PkrI	GCNGC	8 cut(s)	178, 181, 252, 403, 421, 424, 562, 571
PleI	GAGTC	2 cut(s)	56, 215
PpsI	GAGTC	2 cut(s)	56, 215
PscI	ACATGT	2 cut(s)	162, 664
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	342, 404
PspGI	CCWGG	2 cut(s)	342, 404
PspN4I	GGNNCC	2 cut(s)	588, 621
PspPI	GGNCC	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	574
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	663
SacI	GAGCTC	1 cut(s)	195
SacII	CCGCGG	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	20, 83
SatI	GCNGC	8 cut(s)	177, 180, 251, 402, 420, 423, 561, 570
Sau3AI	GATC	2 cut(s)	229, 574
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	2 cut(s)	57, 216
ScrFI	CCNGG	2 cut(s)	344, 406
SduI	GDGCHC	2 cut(s)	15, 195
SfcI	CTRYAG	1 cut(s)	570
Sfr303I	CCGCGG	1 cut(s)	180
SgrBI	CCGCGG	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	663
Sse9I	AATT	4 cut(s)	22, 433, 551, 646
SsiI	CCGC	6 cut(s)	71, 177, 179, 321, 401, 422
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	342, 404
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	2 cut(s)	62, 187
TaiI	ACGT	2 cut(s)	40, 504
TaqI	TCGA	4 cut(s)	189, 195, 315, 498
TasI	AATT	4 cut(s)	22, 433, 551, 646
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	4 cut(s)	179, 182, 404, 425
TfiI	GAWTC	2 cut(s)	339, 358
Tru1I	TTAA	2 cut(s)	20, 83
Tru9I	TTAA	2 cut(s)	20, 83
TscAI	CASTG	1 cut(s)	588
TseFI	GTSAC	3 cut(s)	38, 266, 502
TseI	GCWGC	4 cut(s)	250, 419, 560, 569
Tsp45I	GTSAC	3 cut(s)	38, 266, 502
TspDTI	ATGAA	3 cut(s)	17, 101, 645
TspGWI	ACGGA	3 cut(s)	288, 403, 492
TspRI	CASTG	1 cut(s)	588
XapI	RAATTY	3 cut(s)	22, 433, 551
XceI	RCATGY	2 cut(s)	166, 668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	357
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.