Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006870

Physical Location & Seq

Genomic Coordinates Reverse (-)

25620003 .. 25621706

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23000.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTACACACCCGCCGAGGCAACCGTCGAGCTCGATTTCTTGGGAGTCGGGATGACGGCGGCTATGGATCACCACCCCCACAACAACCAGCGAGGCGGCGGTGACAACTTCTCCACGGCCTTGCCCAAATCTCCCTTCCAGAAGTTCCTCGAACGCGGGAGAAACTTCCGAGGAGTCCAGGCCCGAGAAGTGAATATTCCAAATCTTCTAACCTCTGAGGTTCTGAAATCCGTGATTGCAGCCAGGAAATCCATGGCTGCGTCTCCGGAGAATGCCCCTGAAAAACCAAAACCGAAGCCTATGACGGTTTTCTACGGCGGAAGCGTCGCTGTTTTTGAAGTCACTCCGGAGAAGTTTGAGAGCATAGTGAAGCTTGCCATGGAAGAAAAATTCAAAGCTGCTAGAGCTGCAGATCGCCCACAGGAGTCAAAACAACAACAGCTGGTGAATGTTGACGGTCCTCTCAACGAAGATCTGCCAATTGCTCGAAGAAAATCACTTCAGAGGTTCTTGGAGAAACGTAAAGAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010033 GO:0010112 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032101 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045088 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

178

Amino Acids

19.78

Weight (kDa)

9.61

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	96 - 126	3.8e-09	tify domain
Jas_motif	PF09425	160 - 184	3.5e-14	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220
fragaria_vesca	FvH4_4g23000 FvH4_4g23000
malus_domestica	MD13G1127100.v1.1 MD16G1127400.v1.1
prunus_persica	Prupe.1G218500_v2.0.a1
pyrus_communis	pycom13g11020 pycom16g10820
rosa_chinensis	RchiOBHm_Chr4g0429271
rosa_laevigata	RLG00000007085
rosa_multiflora	Rmu_sc0000054.1_g000018 Rmu_sc0036209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370890
rosa_rugosa	Rorug04G0234600 Rorug04G0234700
rosa_samantha	Rh4AG290300 Rh4BG296000 Rh4CG311800 Rh4DG293100
rosa_wichuraiana	Rw4G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AccIII	TCCGGA	2 cut(s)	265, 346
AciI	CCGC	6 cut(s)	12, 59, 96, 99, 156, 318
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	2 cut(s)	338, 394
AjnI	CCWGG	2 cut(s)	177, 242
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	5 cut(s)	31, 373, 398, 407, 442
AluI	AGCT	5 cut(s)	31, 373, 398, 407, 442
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	75
Ama87I	CYCGRG	1 cut(s)	183
Aor13HI	TCCGGA	2 cut(s)	265, 346
AoxI	GGCC	2 cut(s)	117, 180
ApeKI	GCWGC	4 cut(s)	239, 257, 398, 407
ApoI	RAATTY	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	181, 458
AsuHPI	GGTGA	3 cut(s)	62, 113, 457
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	244, 251, 385, 394
BceAI	ACGGC	3 cut(s)	72, 132, 331
BciT130I	CCWGG	2 cut(s)	179, 244
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	408
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	6 cut(s)	60, 97, 240, 258, 399, 408
BlsI	GCNGC	6 cut(s)	61, 98, 241, 259, 400, 409
Bme1390I	CCNGG	2 cut(s)	179, 244
Bme18I	GGWCC	1 cut(s)	458
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	181, 458
BmrFI	CCNGG	2 cut(s)	179, 244
BsaJI	CCNNGG	5 cut(s)	15, 114, 169, 252, 378
BsaWI	WCCGGW	2 cut(s)	265, 346
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
BseAI	TCCGGA	2 cut(s)	265, 346
BseBI	CCWGG	2 cut(s)	179, 244
BseDI	CCNNGG	5 cut(s)	15, 114, 169, 252, 378
BseGI	GGATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	4 cut(s)	244, 251, 385, 394
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	119, 182
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	2 cut(s)	266, 347
BsmAI	GTCTC	1 cut(s)	267
BsmBI	CGTCTC	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	119, 182
BsoBI	CYCGRG	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp13I	TCCGGA	2 cut(s)	265, 346
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	67, 412, 472
Bsp19I	CCATGG	2 cut(s)	252, 378
BspACI	CCGC	6 cut(s)	12, 59, 96, 99, 156, 318
BspANI	GGCC	2 cut(s)	119, 182
BspCNI	CTCAG	1 cut(s)	208
BspEI	TCCGGA	2 cut(s)	265, 346
BspFNI	CGCG	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	1 cut(s)	75
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	5 cut(s)	15, 114, 169, 252, 378
BssMI	GATC	3 cut(s)	67, 412, 472
BssT1I	CCWWGG	2 cut(s)	252, 378
Bst2UI	CCWGG	2 cut(s)	179, 244
Bst4CI	ACNGT	3 cut(s)	25, 307, 458
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	3 cut(s)	114, 252, 378
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	3 cut(s)	70, 415, 475
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	3 cut(s)	67, 412, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 407
BstNI	CCWGG	2 cut(s)	179, 244
BstSCI	CCNGG	2 cut(s)	177, 242
BstSFI	CTRYAG	1 cut(s)	408
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	4 cut(s)	244, 251, 385, 394
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	119, 182
BtgI	CCRYGG	3 cut(s)	114, 252, 378
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	375
Cfr13I	GGNCC	2 cut(s)	181, 458
CseI	GACGC	2 cut(s)	249, 313
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	253, 379
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	3 cut(s)	69, 414, 474
DpnII	GATC	3 cut(s)	67, 412, 472
EciI	GGCGGA	1 cut(s)	333
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	2 cut(s)	252, 378
Eco24I	GRGCYC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	177, 242
EcoT14I	CCWWGG	2 cut(s)	252, 378
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	2 cut(s)	252, 378
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	2 cut(s)	256, 382
FaiI	YATR	5 cut(s)	65, 254, 302, 365, 380
FatI	CATG	2 cut(s)	252, 378
FauI	CCCGC	2 cut(s)	19, 149
Fnu4HI	GCNGC	6 cut(s)	60, 97, 240, 258, 399, 408
FokI	GGATG	1 cut(s)	64
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	6 cut(s)	60, 97, 240, 258, 399, 408
FspBI	CTAG	1 cut(s)	402
GluI	GCNGC	6 cut(s)	60, 97, 240, 258, 399, 408
HaeIII	GGCC	2 cut(s)	119, 182
HapII	CCGG	2 cut(s)	266, 347
HgaI	GACGC	2 cut(s)	249, 313
Hin1II	CATG	2 cut(s)	256, 382
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	3 cut(s)	45, 174, 425
HpaII	CCGG	2 cut(s)	266, 347
HphI	GGTGA	3 cut(s)	62, 113, 457
Hpy166II	GTNNAC	2 cut(s)	6, 454
Hpy188I	TCNGA	4 cut(s)	170, 217, 225, 504
Hpy188III	TCNNGA	4 cut(s)	49, 139, 266, 347
Hpy8I	GTNNAC	2 cut(s)	6, 454
Hpy99I	CGWCG	2 cut(s)	29, 329
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	3 cut(s)	25, 307, 458
HpyCH4IV	ACGT	1 cut(s)	520
HpyCH4V	TGCA	2 cut(s)	239, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 407
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	520
Hsp92II	CATG	2 cut(s)	256, 382
Kpn2I	TCCGGA	2 cut(s)	265, 346
Kzo9I	GATC	3 cut(s)	67, 412, 472
Lsp1109I	GCAGC	4 cut(s)	244, 251, 385, 394
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	1 cut(s)	520
MaeIII	GTNAC	2 cut(s)	101, 340
MalI	GATC	3 cut(s)	69, 414, 474
MboI	GATC	3 cut(s)	67, 412, 472
MboII	GAAGA	4 cut(s)	197, 395, 482, 501
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	389, 480
MlyI	GAGTC	3 cut(s)	54, 183, 434
MnlI	CCTC	9 cut(s)	10, 86, 158, 164, 211, 223, 471, 498, 522
MroI	TCCGGA	2 cut(s)	265, 346
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	2 cut(s)	266, 347
MspR9I	CCNGG	2 cut(s)	179, 244
MunI	CAATTG	1 cut(s)	480
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	2 cut(s)	179, 244
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	404, 407
NcoI	CCATGG	2 cut(s)	252, 378
NdeII	GATC	3 cut(s)	67, 412, 472
NlaIII	CATG	2 cut(s)	256, 382
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	2 cut(s)	101, 340
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PctI	GAATGC	1 cut(s)	277
PkrI	GCNGC	6 cut(s)	61, 98, 241, 259, 400, 409
PleI	GAGTC	3 cut(s)	53, 182, 433
PpsI	GAGTC	3 cut(s)	53, 182, 433
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	177, 242
PspGI	CCWGG	2 cut(s)	177, 242
PspPI	GGNCC	2 cut(s)	181, 458
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	33
SatI	GCNGC	6 cut(s)	60, 97, 240, 258, 399, 408
Sau3AI	GATC	3 cut(s)	67, 412, 472
Sau96I	GGNCC	2 cut(s)	181, 458
SchI	GAGTC	3 cut(s)	54, 183, 434
ScrFI	CCNGG	2 cut(s)	179, 244
SduI	GDGCHC	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	408
SinI	GGWCC	1 cut(s)	458
Sse9I	AATT	2 cut(s)	389, 480
SsiI	CCGC	6 cut(s)	12, 59, 96, 99, 156, 318
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	1 cut(s)	402
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	177, 242
StyI	CCWWGG	2 cut(s)	252, 378
TaaI	ACNGT	3 cut(s)	25, 307, 458
TaiI	ACGT	1 cut(s)	523
TaqI	TCGA	4 cut(s)	27, 33, 150, 487
TasI	AATT	2 cut(s)	389, 480
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	2 cut(s)	62, 99
TseFI	GTSAC	2 cut(s)	101, 340
TseI	GCWGC	4 cut(s)	239, 257, 398, 407
Tsp45I	GTSAC	2 cut(s)	101, 340
TspGWI	ACGGA	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	458
XapI	RAATTY	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.