Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006870

Physical Location & Seq

Genomic Coordinates Forward (+)

9274777 .. 9277069

Gene Structure 2293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1127400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCCCAGAGCCACCGTTGAGCTTGATTTTTTCGGCATGGACCAGCACCACCGCGATGCCCCCTCCTCATCCTCCAAATCCCAGTTCCAGAAATTTCTCCACCGCCCCAAAAGCTTCCGAGACATTCACACCGCCATGTCCAAGATCAATCCCGAGGCCTTCAAATCCGTCATCGCTTCCGGCAATGCCAGCCCCAGCGTTCCAAATCCAGGAAAATCATTTTCGGTGCCGTCGAGCCCCAAGGCGGAGCAAGTTCCGTTTTCCTCGTTGCCGCTCTACGTTCCCACCGGCACTTCCGTTTCTTCTTTCACGGTTGCTGCTTCAGAGAGCCTTCAGGAAACGAAGCCGCTGACTATTTTCTACAACGGTACCGTCTCTGTTTTCGACGTCCCTCGCGACAAGGTGGATAACATATTGAAGCTTGCCATAGAAGGAAACTCCGGCAAAGCTGCAGAGGCATCGGTAGCCGTCGATCCAAAACTTGCTTTTCATCCAAGCGAGCAGCATCAGACCCAGCAGCTTGTGGATCCTCTTAGCGAATATCTACCGATTACTCGCAATAAGTCATTGCAAAGGTTTCTTGAGAAACGCAAAGAGAGGTTGAATTCGGGGTCTCCATATGCCTGCCAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010033 GO:0010112 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032101 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045088 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

212

Amino Acids

23.15

Weight (kDa)

9.16

Isoelectric Point (pI)

52.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	112 - 142	8.3e-12	tify domain
Jas_motif	PF09425	183 - 207	3e-12	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220
fragaria_vesca	FvH4_4g23000 FvH4_4g23000
malus_domestica	MD13G1127100.v1.1 MD16G1127400.v1.1
prunus_persica	Prupe.1G218500_v2.0.a1
pyrus_communis	pycom13g11020 pycom16g10820
rosa_chinensis	RchiOBHm_Chr4g0429271
rosa_laevigata	RLG00000007085
rosa_multiflora	Rmu_sc0000054.1_g000018 Rmu_sc0036209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370890
rosa_rugosa	Rorug04G0234600 Rorug04G0234700
rosa_samantha	Rh4AG290300 Rh4BG296000 Rh4CG311800 Rh4DG293100
rosa_wichuraiana	Rw4G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
Acc65I	GGTACC	1 cut(s)	368
AccB1I	GGYRCC	2 cut(s)	226, 368
AccBSI	CCGCTC	1 cut(s)	274
AccII	CGCG	2 cut(s)	54, 396
AciI	CCGC	6 cut(s)	52, 103, 132, 245, 272, 347
AclWI	GGATC	3 cut(s)	467, 521, 534
AcsI	RAATTY	2 cut(s)	92, 604
AcuI	CTGAAG	2 cut(s)	306, 317
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	2 cut(s)	209, 244
AgsI	TTSAA	3 cut(s)	163, 418, 604
AjnI	CCWGG	1 cut(s)	208
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AluBI	AGCT	5 cut(s)	22, 114, 421, 449, 520
AluI	AGCT	5 cut(s)	22, 114, 421, 449, 520
Alw26I	GTCTC	3 cut(s)	114, 379, 618
AlwI	GGATC	3 cut(s)	467, 521, 534
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	4 cut(s)	317, 449, 502, 517
ApoI	RAATTY	2 cut(s)	92, 604
Asp718I	GGTACC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	40
BaeI	ACNNNNGTAYC	2 cut(s)	352, 385
BamHI	GGATCC	1 cut(s)	526
BanI	GGYRCC	2 cut(s)	226, 368
BanII	GRGCYC	1 cut(s)	239
BbvI	GCAGC	4 cut(s)	304, 436, 514, 529
BceAI	ACGGC	2 cut(s)	214, 452
BcgI	CGANNNNNNTGC	2 cut(s)	441, 475
BciT130I	CCWGG	1 cut(s)	210
BcoDI	GTCTC	3 cut(s)	114, 379, 618
BfmI	CTRYAG	1 cut(s)	450
BisI	GCNGC	6 cut(s)	272, 318, 347, 450, 503, 518
BlsI	GCNGC	6 cut(s)	273, 319, 348, 451, 504, 519
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	3 cut(s)	228, 370, 528
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	3 cut(s)	46, 467, 514
BmuI	ACTGGG	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	602
BsaHI	GRCGYC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	618
BsaJI	CCNNGG	2 cut(s)	153, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 244
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	2 cut(s)	190, 566
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	153, 240
BseGI	GGATG	2 cut(s)	68, 490
BseLI	CCNNNNNNNGG	2 cut(s)	209, 244
BseMI	GCAATG	2 cut(s)	190, 566
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	4 cut(s)	304, 436, 514, 529
BseYI	CCCAGC	2 cut(s)	194, 513
Bsh1236I	CGCG	2 cut(s)	54, 396
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	2 cut(s)	226, 368
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	3 cut(s)	180, 288, 441
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	209, 244
BsmAI	GTCTC	3 cut(s)	114, 379, 618
BsmBI	CGTCTC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	618
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	3 cut(s)	144, 472, 526
Bsp68I	TCGCGA	1 cut(s)	396
BspACI	CCGC	6 cut(s)	52, 103, 132, 245, 272, 347
BspANI	GGCC	1 cut(s)	158
BspFNI	CGCG	2 cut(s)	54, 396
BspLI	GGNNCC	3 cut(s)	228, 370, 528
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	3 cut(s)	467, 521, 534
BspT107I	GGYRCC	2 cut(s)	226, 368
BspTNI	GGTCTC	1 cut(s)	618
BsrBI	CCGCTC	1 cut(s)	274
BsrDI	GCAATG	2 cut(s)	190, 566
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	153, 240
BssMI	GATC	3 cut(s)	144, 472, 526
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	4 cut(s)	16, 313, 368, 373
BstACI	GRCGYC	1 cut(s)	387
BstC8I	GCNNGC	4 cut(s)	190, 423, 500, 625
BstDEI	CTNAG	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	68, 490
BstFNI	CGCG	2 cut(s)	54, 396
BstKTI	GATC	3 cut(s)	147, 475, 529
BstMAI	GTCTC	3 cut(s)	114, 379, 618
BstMBI	GATC	3 cut(s)	144, 472, 526
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 189, 455, 464
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	2 cut(s)	54, 396
BstV1I	GCAGC	4 cut(s)	304, 436, 514, 529
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	158
BtgZI	GCGATG	2 cut(s)	69, 157
BtsCI	GGATG	2 cut(s)	68, 490
BtuMI	TCGCGA	1 cut(s)	396
Cac8I	GCNNGC	4 cut(s)	190, 423, 500, 625
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	2 cut(s)	37, 136
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	3 cut(s)	146, 474, 528
DpnII	GATC	3 cut(s)	144, 472, 526
EciI	GGCGGA	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	239
Eco31I	GGTCTC	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	2 cut(s)	306, 317
Eco88I	CYCGRG	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	379
FaeI	CATG	2 cut(s)	40, 139
FaiI	YATR	6 cut(s)	38, 137, 413, 428, 619, 621
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	2 cut(s)	36, 135
FauNDI	CATATG	1 cut(s)	619
Fnu4HI	GCNGC	6 cut(s)	272, 318, 347, 450, 503, 518
FokI	GGATG	2 cut(s)	55, 477
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	6 cut(s)	272, 318, 347, 450, 503, 518
GluI	GCNGC	6 cut(s)	272, 318, 347, 450, 503, 518
GsaI	CCCAGC	2 cut(s)	198, 517
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	3 cut(s)	180, 288, 441
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	2 cut(s)	40, 139
HindIII	AAGCTT	2 cut(s)	112, 419
HpaII	CCGG	3 cut(s)	180, 288, 441
Hpy188I	TCNGA	3 cut(s)	119, 325, 510
Hpy188III	TCNNGA	5 cut(s)	88, 152, 335, 395, 581
Hpy99I	CGWCG	3 cut(s)	235, 389, 473
HpyAV	CCTTC	3 cut(s)	169, 341, 425
HpyCH4III	ACNGT	4 cut(s)	16, 313, 368, 373
HpyCH4IV	ACGT	2 cut(s)	279, 387
HpyCH4V	TGCA	2 cut(s)	452, 571
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 189, 455, 464
HpyF3I	CTNAG	1 cut(s)	533
HpySE526I	ACGT	2 cut(s)	279, 387
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	2 cut(s)	40, 139
KpnI	GGTACC	1 cut(s)	372
Kzo9I	GATC	3 cut(s)	144, 472, 526
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	4 cut(s)	304, 436, 514, 529
LweI	GCATC	3 cut(s)	46, 467, 514
MaeII	ACGT	2 cut(s)	279, 387
MalI	GATC	3 cut(s)	146, 474, 528
MbiI	CCGCTC	1 cut(s)	274
MboI	GATC	3 cut(s)	144, 472, 526
MboII	GAAGA	1 cut(s)	294
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	2 cut(s)	92, 604
MnlI	CCTC	9 cut(s)	73, 76, 82, 148, 274, 402, 448, 540, 591
MslI	CAYNNNNRTG	2 cut(s)	54, 134
MspA1I	CMGCKG	1 cut(s)	349
MspI	CCGG	3 cut(s)	180, 288, 441
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	2 cut(s)	54, 396
MwoI	GCNNNNNNNGC	4 cut(s)	111, 189, 455, 464
NdeI	CATATG	1 cut(s)	619
NdeII	GATC	3 cut(s)	144, 472, 526
NlaIII	CATG	2 cut(s)	40, 139
NlaIV	GGNNCC	3 cut(s)	228, 370, 528
NruI	TCGCGA	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	2 cut(s)	230, 393
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	6 cut(s)	273, 319, 348, 451, 504, 519
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	2 cut(s)	194, 513
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	3 cut(s)	228, 370, 528
PspPI	GGNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	526
RruI	TCGCGA	1 cut(s)	396
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	2 cut(s)	54, 134
SatI	GCNGC	6 cut(s)	272, 318, 347, 450, 503, 518
Sau3AI	GATC	3 cut(s)	144, 472, 526
Sau96I	GGNCC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	239
SfaNI	GCATC	3 cut(s)	46, 467, 514
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	2 cut(s)	54, 134
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	2 cut(s)	92, 604
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	6 cut(s)	52, 103, 132, 245, 272, 347
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	4 cut(s)	16, 313, 368, 373
TaiI	ACGT	2 cut(s)	282, 390
TaqI	TCGA	3 cut(s)	233, 384, 471
TasI	AATT	2 cut(s)	92, 604
TauI	GCSGC	2 cut(s)	274, 349
TseI	GCWGC	4 cut(s)	317, 449, 502, 517
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	3 cut(s)	157, 246, 286
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	92, 604
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.