Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000054.1

Orthogroup ID

OG0006870

Physical Location & Seq

Genomic Coordinates Forward (+)

66321 .. 69556

Gene Structure 3236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000054.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgcctacccgtccggcaacaaagtccttaggacgcgtcgccggacgagtgagaagatatttgagagaaactcttgcggctacggcgttgttgcgggacggggactcctatttatacagagaagtggatcactctaagctcagtcccatcaaggagttagagccatccagtcccgatgagtcgttcccattccaattcatcagtccatcctccgccggtagaaaaaccccgcgaactccccatggtcgaagcccaaagcctactgaccaaggatcagatcgacgccactacttgccgataaacggcgacactatgcctacccgtccggcaacaaagtccttaggacgcgtcgccggacgagtgagaagatatttgagagaaactcttgcggctacggcgttgttgcgggacggagtcccacacaacagtttcttcccgcctcgccatttaagacgctctgagcttctcatcattcttcatttcacaaacaaactcaaaccgaaatcgaaaacaagtcagcaaccaaacatgtacacaccggctgcggcaaccgtcgagctcgatttcttgggagtcgggacgacgacgattatggatcagcaccaccacaatcagcagcgtggtggtggtggtgacaccttctctactgacttgcccaaatctccgttccagaagttcctcgaacgcggaagaagcttccgaggaatccaggcccgagaagtgattcctaatcttctcagttctgaagttctgaaatccatgattgcggccaggaaatccgtggctgcggctctggagaattcccctgaaaaaccaaaagcaaagcctatgacgattttctacggcggaagcgtctctgttttcgacgtcactccggacaagtttgagagcatagtgaagcttgccatggaagagaaattcaaagctgctggagctgcagatcaaccactggagccaaaacaacaacagctggtgaatgttgaggctcctctcaatgaaggtaggttctgtaatttcactttgcatttacatgttagatttcttttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010033 GO:0010112 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032101 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045088 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

349

Amino Acids

38.96

Weight (kDa)

10.13

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220
fragaria_vesca	FvH4_4g23000 FvH4_4g23000
malus_domestica	MD13G1127100.v1.1 MD16G1127400.v1.1
prunus_persica	Prupe.1G218500_v2.0.a1
pyrus_communis	pycom13g11020 pycom16g10820
rosa_chinensis	RchiOBHm_Chr4g0429271
rosa_laevigata	RLG00000007085
rosa_multiflora	Rmu_sc0000054.1_g000018 Rmu_sc0036209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370890
rosa_rugosa	Rorug04G0234600 Rorug04G0234700
rosa_samantha	Rh4AG290300 Rh4BG296000 Rh4CG311800 Rh4DG293100
rosa_wichuraiana	Rw4G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	870
AccII	CGCG	4 cut(s)	36, 232, 348, 687
AccIII	TCCGGA	1 cut(s)	874
AclWI	GGATC	3 cut(s)	135, 280, 603
AcoI	YGGCCR	1 cut(s)	768
AcsI	RAATTY	2 cut(s)	799, 917
AcuI	CTGAAG	1 cut(s)	765
AcyI	GRCGYC	2 cut(s)	283, 867
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflIII	ACRYGT	4 cut(s)	34, 346, 528, 1030
AgsI	TTSAA	1 cut(s)	922
AjnI	CCWGG	2 cut(s)	708, 770
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AluBI	AGCT	8 cut(s)	139, 463, 559, 696, 901, 926, 935, 970
AluI	AGCT	8 cut(s)	139, 463, 559, 696, 901, 926, 935, 970
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	859
AlwI	GGATC	3 cut(s)	135, 280, 603
Ama87I	CYCGRG	1 cut(s)	714
Aor13HI	TCCGGA	1 cut(s)	874
AoxI	GGCC	2 cut(s)	711, 768
ApeKI	GCWGC	5 cut(s)	542, 616, 785, 926, 935
ApoI	RAATTY	2 cut(s)	799, 917
Asp700I	GAANNNNTTC	1 cut(s)	723
AspS9I	GGNCC	1 cut(s)	712
AsuHPI	GGTGA	2 cut(s)	644, 985
AvaI	CYCGRG	1 cut(s)	714
AxyI	CCTNAGG	2 cut(s)	28, 340
BanII	GRGCYC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	5 cut(s)	529, 628, 772, 913, 922
BccI	CCATC	3 cut(s)	155, 172, 214
BceAI	ACGGC	4 cut(s)	99, 319, 411, 859
BciT130I	CCWGG	2 cut(s)	710, 772
BcoDI	GTCTC	1 cut(s)	859
BfmI	CTRYAG	1 cut(s)	936
Bme1390I	CCNGG	2 cut(s)	710, 772
BmeT110I	CYCGRG	1 cut(s)	714
BmgT120I	GGNCC	1 cut(s)	712
BmiI	GGNNCC	2 cut(s)	954, 987
BmrFI	CCNGG	2 cut(s)	710, 772
BplI	GAGNNNNNCTC	4 cut(s)	55, 87, 367, 399
BpmI	CTGGAG	3 cut(s)	815, 951, 971
BsaHI	GRCGYC	2 cut(s)	283, 867
BsaJI	CCNNGG	5 cut(s)	241, 268, 700, 780, 906
BsaWI	WCCGGW	1 cut(s)	874
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse118I	RCCGGY	2 cut(s)	215, 538
Bse1I	ACTGG	2 cut(s)	168, 954
Bse21I	CCTNAGG	2 cut(s)	28, 340
BseAI	TCCGGA	1 cut(s)	874
BseBI	CCWGG	2 cut(s)	710, 772
BseDI	CCNNGG	5 cut(s)	241, 268, 700, 780, 906
BseGI	GGATG	2 cut(s)	164, 206
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	3 cut(s)	154, 450, 751
BseNI	ACTGG	2 cut(s)	168, 954
BseRI	GAGGAG	1 cut(s)	978
BseXI	GCAGC	5 cut(s)	529, 628, 772, 913, 922
Bsh1236I	CGCG	4 cut(s)	36, 232, 348, 687
BshFI	GGCC	2 cut(s)	713, 770
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	714
BsiSI	CCGG	7 cut(s)	14, 42, 216, 326, 354, 539, 875
BslFI	GGGAC	7 cut(s)	110, 116, 129, 156, 401, 422, 592
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	859
BsmBI	CGTCTC	1 cut(s)	859
BsmFI	GGGAC	7 cut(s)	110, 116, 129, 156, 401, 422, 592
BsnI	GGCC	2 cut(s)	713, 770
BsoBI	CYCGRG	1 cut(s)	714
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp13I	TCCGGA	1 cut(s)	874
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	5 cut(s)	127, 272, 277, 595, 940
Bsp19I	CCATGG	2 cut(s)	241, 906
BspANI	GGCC	2 cut(s)	713, 770
BspCNI	CTCAG	3 cut(s)	153, 451, 750
BspEI	TCCGGA	1 cut(s)	874
BspFNI	CGCG	4 cut(s)	36, 232, 348, 687
BspLI	GGNNCC	2 cut(s)	954, 987
BspMAI	CTGCAG	1 cut(s)	940
BspPI	GGATC	3 cut(s)	135, 280, 603
BsrFI	RCCGGY	2 cut(s)	215, 538
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	168, 954
BssAI	RCCGGY	2 cut(s)	215, 538
BssECI	CCNNGG	5 cut(s)	241, 268, 700, 780, 906
BssMI	GATC	5 cut(s)	127, 272, 277, 595, 940
BssNI	GRCGYC	2 cut(s)	283, 867
BssT1I	CCWWGG	3 cut(s)	241, 268, 906
Bst2UI	CCWGG	2 cut(s)	710, 772
Bst4CI	ACNGT	2 cut(s)	428, 553
Bst6I	CTCTTC	1 cut(s)	906
BstACI	GRCGYC	2 cut(s)	283, 867
BstAUI	TGTACA	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	903
BstDEI	CTNAG	6 cut(s)	28, 135, 140, 340, 459, 737
BstDSI	CCRYGG	3 cut(s)	241, 780, 906
BstF5I	GGATG	2 cut(s)	164, 206
BstFNI	CGCG	4 cut(s)	36, 232, 348, 687
BstKTI	GATC	5 cut(s)	130, 275, 280, 598, 943
BstMAI	GTCTC	1 cut(s)	859
BstMBI	GATC	5 cut(s)	127, 272, 277, 595, 940
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 395, 693, 932, 935
BstNI	CCWGG	2 cut(s)	710, 772
BstNSI	RCATGY	2 cut(s)	532, 1034
BstSCI	CCNGG	2 cut(s)	708, 770
BstSFI	CTRYAG	1 cut(s)	936
BstUI	CGCG	4 cut(s)	36, 232, 348, 687
BstV1I	GCAGC	5 cut(s)	529, 628, 772, 913, 922
Bsu36I	CCTNAGG	2 cut(s)	28, 340
BsuRI	GGCC	2 cut(s)	713, 770
BtgI	CCRYGG	3 cut(s)	241, 780, 906
BtsCI	GGATG	2 cut(s)	164, 206
BtsIMutI	CAGTG	1 cut(s)	947
Cac8I	GCNNGC	1 cut(s)	903
Cfr10I	RCCGGY	2 cut(s)	215, 538
Cfr13I	GGNCC	1 cut(s)	712
CseI	GACGC	7 cut(s)	25, 42, 291, 337, 354, 462, 841
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	5 cut(s)	242, 529, 760, 907, 1031
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	6 cut(s)	28, 135, 140, 340, 459, 737
DpnI	GATC	5 cut(s)	129, 274, 279, 597, 942
DpnII	GATC	5 cut(s)	127, 272, 277, 595, 940
EaeI	YGGCCR	1 cut(s)	768
Eam1104I	CTCTTC	1 cut(s)	906
EarI	CTCTTC	1 cut(s)	906
EciI	GGCGGA	2 cut(s)	202, 861
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	3 cut(s)	241, 268, 906
Eco24I	GRGCYC	1 cut(s)	561
Eco53kI	GAGCTC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	765
Eco81I	CCTNAGG	2 cut(s)	28, 340
Eco88I	CYCGRG	1 cut(s)	714
EcoICRI	GAGCTC	1 cut(s)	559
EcoRI	GAATTC	1 cut(s)	799
EcoRII	CCWGG	2 cut(s)	708, 770
EcoT14I	CCWWGG	3 cut(s)	241, 268, 906
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	3 cut(s)	241, 268, 906
Esp3I	CGTCTC	1 cut(s)	859
FaeI	CATG	5 cut(s)	245, 532, 763, 910, 1034
FaqI	GGGAC	7 cut(s)	110, 116, 129, 156, 401, 422, 592
FatI	CATG	5 cut(s)	241, 528, 759, 906, 1030
FauI	CCCGC	4 cut(s)	87, 237, 399, 444
FokI	GGATG	2 cut(s)	151, 193
FriOI	GRGCYC	1 cut(s)	561
GsuI	CTGGAG	3 cut(s)	815, 951, 971
HaeIII	GGCC	2 cut(s)	713, 770
HapII	CCGG	7 cut(s)	14, 42, 216, 326, 354, 539, 875
HgaI	GACGC	7 cut(s)	25, 42, 291, 337, 354, 462, 841
Hin1I	GRCGYC	2 cut(s)	283, 867
Hin1II	CATG	5 cut(s)	245, 532, 763, 910, 1034
HindIII	AAGCTT	2 cut(s)	694, 899
HinfI	GANTC	6 cut(s)	104, 179, 414, 573, 705, 724
HpaII	CCGG	7 cut(s)	14, 42, 216, 326, 354, 539, 875
HphI	GGTGA	2 cut(s)	644, 985
Hpy166II	GTNNAC	1 cut(s)	534
Hpy188I	TCNGA	5 cut(s)	277, 460, 701, 745, 753
Hpy188III	TCNNGA	5 cut(s)	173, 577, 670, 794, 875
Hpy8I	GTNNAC	1 cut(s)	534
Hpy99I	CGWCG	7 cut(s)	41, 285, 353, 557, 586, 589, 869
HpyAV	CCTTC	2 cut(s)	649, 992
HpyCH4III	ACNGT	2 cut(s)	428, 553
HpyCH4IV	ACGT	1 cut(s)	867
HpyCH4V	TGCA	2 cut(s)	938, 1024
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 395, 693, 932, 935
HpyF3I	CTNAG	6 cut(s)	28, 135, 140, 340, 459, 737
HpySE526I	ACGT	1 cut(s)	867
Hsp92I	GRCGYC	2 cut(s)	283, 867
Hsp92II	CATG	5 cut(s)	245, 532, 763, 910, 1034
Kpn2I	TCCGGA	1 cut(s)	874
Kzo9I	GATC	5 cut(s)	127, 272, 277, 595, 940
LmnI	GCTCC	3 cut(s)	932, 952, 991
Lsp1109I	GCAGC	5 cut(s)	529, 628, 772, 913, 922
MaeII	ACGT	1 cut(s)	867
MaeIII	GTNAC	2 cut(s)	632, 868
MalI	GATC	5 cut(s)	129, 274, 279, 597, 942
MboI	GATC	5 cut(s)	127, 272, 277, 595, 940
MboII	GAAGA	7 cut(s)	66, 378, 424, 467, 702, 725, 923
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	4 cut(s)	194, 799, 917, 1012
MluI	ACGCGT	2 cut(s)	34, 346
MlyI	GAGTC	4 cut(s)	98, 188, 423, 582
MnlI	CCTC	6 cut(s)	220, 450, 689, 695, 976, 999
MroI	TCCGGA	1 cut(s)	874
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	1 cut(s)	449
MslI	CAYNNNNRTG	1 cut(s)	1029
MspA1I	CMGCKG	1 cut(s)	970
MspI	CCGG	7 cut(s)	14, 42, 216, 326, 354, 539, 875
MspR9I	CCNGG	2 cut(s)	710, 772
MvaI	CCWGG	2 cut(s)	710, 772
MvnI	CGCG	4 cut(s)	36, 232, 348, 687
MwoI	GCNNNNNNNGC	5 cut(s)	83, 395, 693, 932, 935
NcoI	CCATGG	2 cut(s)	241, 906
NdeII	GATC	5 cut(s)	127, 272, 277, 595, 940
NlaIII	CATG	5 cut(s)	245, 532, 763, 910, 1034
NlaIV	GGNNCC	2 cut(s)	954, 987
NmuCI	GTSAC	2 cut(s)	632, 868
NspI	RCATGY	2 cut(s)	532, 1034
PciI	ACATGT	2 cut(s)	528, 1030
PcsI	WCGNNNNNNNCGW	1 cut(s)	849
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	2 cut(s)	705, 724
PflFI	GACNNNGTC	1 cut(s)	413
PleI	GAGTC	4 cut(s)	98, 187, 422, 581
PpsI	GAGTC	4 cut(s)	98, 187, 422, 581
PscI	ACATGT	2 cut(s)	528, 1030
Psp124BI	GAGCTC	1 cut(s)	561
Psp6I	CCWGG	2 cut(s)	708, 770
PspGI	CCWGG	2 cut(s)	708, 770
PspN4I	GGNNCC	2 cut(s)	954, 987
PspPI	GGNCC	1 cut(s)	712
PstI	CTGCAG	1 cut(s)	940
PsyI	GACNNNGTC	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	970
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
RseI	CAYNNNNRTG	1 cut(s)	1029
SacI	GAGCTC	1 cut(s)	561
SaqAI	TTAA	1 cut(s)	449
Sau3AI	GATC	5 cut(s)	127, 272, 277, 595, 940
Sau96I	GGNCC	1 cut(s)	712
SchI	GAGTC	4 cut(s)	98, 188, 423, 582
ScrFI	CCNGG	2 cut(s)	710, 772
SduI	GDGCHC	1 cut(s)	561
SfcI	CTRYAG	1 cut(s)	936
SmiMI	CAYNNNNRTG	1 cut(s)	1029
Sse9I	AATT	4 cut(s)	194, 799, 917, 1012
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	2 cut(s)	708, 770
StyI	CCWWGG	3 cut(s)	241, 268, 906
TaaI	ACNGT	2 cut(s)	428, 553
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	7 cut(s)	247, 280, 506, 555, 561, 681, 864
TasI	AATT	4 cut(s)	194, 799, 917, 1012
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	5 cut(s)	80, 392, 548, 770, 791
TfiI	GAWTC	2 cut(s)	705, 724
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	1 cut(s)	954
TseFI	GTSAC	2 cut(s)	632, 868
TseI	GCWGC	5 cut(s)	542, 616, 785, 926, 935
Tsp45I	GTSAC	2 cut(s)	632, 868
TspDTI	ATGAA	3 cut(s)	187, 467, 1011
TspGWI	ACGGA	3 cut(s)	426, 654, 769
TspRI	CASTG	1 cut(s)	954
Tth111I	GACNNNGTC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	799, 917
XceI	RCATGY	2 cut(s)	532, 1034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	778
XmnI	GAANNNNTTC	1 cut(s)	723
ZraI	GACGTC	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.