Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006870

Physical Location & Seq

Genomic Coordinates Forward (+)

13420565 .. 13421742

Gene Structure 1178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTACACACCGGCCGCGGCAACCGTTGAGCTCGATTTCTTGGGAGTCGGGACGACCACGATTATGGATCAGCGCCACCACAACCAGCAGCGTGATGGTGGTGACACCTTCTCTACTGCCTTGCCCAAATCTCCGTTCCAGAAGTTCCTCGAACGCGGAAGAAGCTTCCGAGGAATCCAGGCCCGAGAAGTGATTCCTAATCTTCTCAGTTCCGAAGTTCTGAAATCCGTGATTGCGGCCAGGAAATCCGTGGCTGCGGCTCCGGAGAATGCCCCTGAAAAACCAAAAGCAAAGCCTATGACGATTTTCTACGGCGGAAGCGTCTCTGTTTTCGACGTCACTCCGGACAAGTTTGAGAGCATAGTGAAGCTTGCCATGGAAGGGAAAATCAAAGCTGCTAGAGCTGCAGATCAACCACTGGAGCCAAAACAACAACAGCTGGTGAATGTTGAGGATCCTCTCAATGAAGATCTGCCAATTGCTCGTAGCAAATCACTCCAAAGATTTTTGGAGAAGCGTAAAGAGAGGTTGAAGACGGTGTCCCCATATGGTTGTCACACCACCAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010033 GO:0010112 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032101 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045088 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

191

Amino Acids

21.09

Weight (kDa)

9.43

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	95 - 125	6.2e-11	tify domain
Jas_motif	PF09425	159 - 183	1.3e-12	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220
fragaria_vesca	FvH4_4g23000 FvH4_4g23000
malus_domestica	MD13G1127100.v1.1 MD16G1127400.v1.1
prunus_persica	Prupe.1G218500_v2.0.a1
pyrus_communis	pycom13g11020 pycom16g10820
rosa_chinensis	RchiOBHm_Chr4g0429271
rosa_laevigata	RLG00000007085
rosa_multiflora	Rmu_sc0000054.1_g000018 Rmu_sc0036209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370890
rosa_rugosa	Rorug04G0234600 Rorug04G0234700
rosa_samantha	Rh4AG290300 Rh4BG296000 Rh4CG311800 Rh4DG293100
rosa_wichuraiana	Rw4G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	339
AccII	CGCG	2 cut(s)	17, 156
AccIII	TCCGGA	2 cut(s)	262, 343
AciI	CCGC	6 cut(s)	15, 17, 156, 236, 257, 315
AclWI	GGATC	3 cut(s)	75, 449, 462
AcoI	YGGCCR	2 cut(s)	12, 237
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	1 cut(s)	532
AjnI	CCWGG	2 cut(s)	177, 239
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	6 cut(s)	31, 165, 370, 395, 404, 439
AluI	AGCT	6 cut(s)	31, 165, 370, 395, 404, 439
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	3 cut(s)	75, 449, 462
Ama87I	CYCGRG	1 cut(s)	183
Aor13HI	TCCGGA	2 cut(s)	262, 343
AoxI	GGCC	3 cut(s)	12, 180, 237
ApeKI	GCWGC	4 cut(s)	88, 254, 395, 404
Asp700I	GAANNNNTTC	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	113, 454
AvaI	CYCGRG	1 cut(s)	183
BamHI	GGATCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	33
BbsI	GAAGAC	1 cut(s)	539
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	4 cut(s)	100, 241, 382, 391
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	2 cut(s)	179, 241
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	2 cut(s)	399, 571
BfmI	CTRYAG	1 cut(s)	405
BfoI	RGCGCY	1 cut(s)	76
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	8 cut(s)	15, 18, 89, 237, 255, 258, 396, 405
BlsI	GCNGC	8 cut(s)	16, 19, 90, 238, 256, 259, 397, 406
Bme1390I	CCNGG	2 cut(s)	179, 241
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	3 cut(s)	261, 423, 456
BmrFI	CCNGG	2 cut(s)	179, 241
BpiI	GAAGAC	1 cut(s)	539
BpmI	CTGGAG	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	4 cut(s)	15, 169, 249, 375
BsaWI	WCCGGW	2 cut(s)	262, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	423
BseAI	TCCGGA	2 cut(s)	262, 343
BseBI	CCWGG	2 cut(s)	179, 241
BseDI	CCNNGG	4 cut(s)	15, 169, 249, 375
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	423
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	4 cut(s)	100, 241, 382, 391
Bsh1236I	CGCG	2 cut(s)	17, 156
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	14, 182, 239
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	3 cut(s)	11, 263, 344
BslFI	GGGAC	2 cut(s)	64, 526
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	1 cut(s)	328
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	2 cut(s)	64, 526
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	14, 182, 239
BsoBI	CYCGRG	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp13I	TCCGGA	2 cut(s)	262, 343
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	67, 409, 454, 469
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	6 cut(s)	15, 17, 156, 236, 257, 315
BspANI	GGCC	3 cut(s)	14, 182, 239
BspCNI	CTCAG	1 cut(s)	219
BspEI	TCCGGA	2 cut(s)	262, 343
BspFNI	CGCG	2 cut(s)	17, 156
BspLI	GGNNCC	3 cut(s)	261, 423, 456
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	3 cut(s)	75, 449, 462
BsrFI	RCCGGY	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	423
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	4 cut(s)	15, 169, 249, 375
BssMI	GATC	4 cut(s)	67, 409, 454, 469
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	179, 241
Bst4CI	ACNGT	2 cut(s)	25, 538
BstACI	GRCGYC	1 cut(s)	336
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	3 cut(s)	15, 249, 375
BstFNI	CGCG	2 cut(s)	17, 156
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	4 cut(s)	70, 412, 457, 472
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	4 cut(s)	67, 409, 454, 469
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 401, 404
BstNI	CCWGG	2 cut(s)	179, 241
BstSCI	CCNGG	2 cut(s)	177, 239
BstSFI	CTRYAG	1 cut(s)	405
BstUI	CGCG	2 cut(s)	17, 156
BstV1I	GCAGC	4 cut(s)	100, 241, 382, 391
BstV2I	GAAGAC	1 cut(s)	539
BstX2I	RGATCY	2 cut(s)	454, 469
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	2 cut(s)	454, 469
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	3 cut(s)	14, 182, 239
BtgI	CCRYGG	3 cut(s)	15, 249, 375
BtsIMutI	CAGTG	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	181
Cfr42I	CCGCGG	1 cut(s)	18
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	376
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	4 cut(s)	69, 411, 456, 471
DpnII	GATC	4 cut(s)	67, 409, 454, 469
EaeI	YGGCCR	2 cut(s)	12, 237
EagI	CGGCCG	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	33
Eco52I	CGGCCG	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	177, 239
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	1 cut(s)	379
FaiI	YATR	6 cut(s)	65, 299, 362, 377, 547, 549
FaqI	GGGAC	2 cut(s)	64, 526
FatI	CATG	1 cut(s)	375
FauNDI	CATATG	1 cut(s)	547
Fnu4HI	GCNGC	8 cut(s)	15, 18, 89, 237, 255, 258, 396, 405
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	8 cut(s)	15, 18, 89, 237, 255, 258, 396, 405
FspBI	CTAG	2 cut(s)	399, 571
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	8 cut(s)	15, 18, 89, 237, 255, 258, 396, 405
GsuI	CTGGAG	1 cut(s)	440
HaeII	RGCGCY	1 cut(s)	76
HaeIII	GGCC	3 cut(s)	14, 182, 239
HapII	CCGG	3 cut(s)	11, 263, 344
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HindIII	AAGCTT	2 cut(s)	163, 368
HinfI	GANTC	3 cut(s)	45, 174, 193
HpaII	CCGG	3 cut(s)	11, 263, 344
HphI	GGTGA	2 cut(s)	113, 454
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	170, 214, 222
Hpy188III	TCNNGA	4 cut(s)	49, 139, 263, 344
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	118, 374
HpyCH4III	ACNGT	2 cut(s)	25, 538
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	1 cut(s)	407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 401, 404
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	1 cut(s)	73
Kpn2I	TCCGGA	2 cut(s)	262, 343
KspI	CCGCGG	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	67, 409, 454, 469
LmnI	GCTCC	2 cut(s)	265, 421
Lsp1109I	GCAGC	4 cut(s)	100, 241, 382, 391
MaeI	CTAG	2 cut(s)	399, 571
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	3 cut(s)	101, 337, 554
MalI	GATC	4 cut(s)	69, 411, 456, 471
MboI	GATC	4 cut(s)	67, 409, 454, 469
MboII	GAAGA	4 cut(s)	171, 194, 479, 544
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	2 cut(s)	454, 469
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	158, 164, 445, 468, 519
MroI	TCCGGA	2 cut(s)	262, 343
MroXI	GAANNNNTTC	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	62
MspA1I	CMGCKG	2 cut(s)	17, 439
MspI	CCGG	3 cut(s)	11, 263, 344
MspR9I	CCNGG	2 cut(s)	179, 241
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	2 cut(s)	179, 241
MvnI	CGCG	2 cut(s)	17, 156
MwoI	GCNNNNNNNGC	3 cut(s)	162, 401, 404
NcoI	CCATGG	1 cut(s)	375
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	4 cut(s)	67, 409, 454, 469
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	3 cut(s)	261, 423, 456
NmuCI	GTSAC	3 cut(s)	101, 337, 554
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PctI	GAATGC	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	174, 193
PflFI	GACNNNGTC	1 cut(s)	538
PkrI	GCNGC	8 cut(s)	16, 19, 90, 238, 256, 259, 397, 406
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	177, 239
PspGI	CCWGG	2 cut(s)	177, 239
PspN4I	GGNNCC	3 cut(s)	261, 423, 456
PspPI	GGNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	2 cut(s)	454, 469
PsyI	GACNNNGTC	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	439
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	33
SacII	CCGCGG	1 cut(s)	18
SatI	GCNGC	8 cut(s)	15, 18, 89, 237, 255, 258, 396, 405
Sau3AI	GATC	4 cut(s)	67, 409, 454, 469
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	2 cut(s)	179, 241
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	9 cut(s)	33, 110, 167, 339, 372, 397, 406, 441, 530
SfcI	CTRYAG	1 cut(s)	405
Sfr303I	CCGCGG	1 cut(s)	18
SgrBI	CCGCGG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	6 cut(s)	15, 17, 156, 236, 257, 315
SspMI	CTAG	2 cut(s)	399, 571
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	177, 239
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	25, 538
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	3 cut(s)	33, 150, 333
TasI	AATT	1 cut(s)	477
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	4 cut(s)	17, 20, 239, 260
TfiI	GAWTC	2 cut(s)	174, 193
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	3 cut(s)	101, 337, 554
TseI	GCWGC	4 cut(s)	88, 254, 395, 404
Tsp45I	GTSAC	3 cut(s)	101, 337, 554
TspDTI	ATGAA	1 cut(s)	480
TspGWI	ACGGA	3 cut(s)	123, 217, 238
TspRI	CASTG	1 cut(s)	423
Tth111I	GACNNNGTC	1 cut(s)	538
XcmI	CCANNNNNNNNNTGG	2 cut(s)	92, 247
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	2 cut(s)	399, 571
ZraI	GACGTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.