Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006870

Physical Location & Seq

Genomic Coordinates Reverse (-)

23337738 .. 23339949

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G218500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAATCTCGTGCCTCTTTTAAGACCCTTCTCTCTCTCCCCCTCCTATTTAGAGAAAAACCCACTCCCGCCTTGTCATTTAAGTCGCTCCTCCAACCTCCCCAACATTCCCCCAAACAAGCAATTTAGCAAACAGTTTGCGAGCATGTCCAGGGCAACCGTTGAGCTCGATTTCTTCGGCATGGATCAGCATCGTGACCCTTCCTCCCCCTCCAAATCTCAGTTCCAGAAGTTCCTTCATCGCCAGAGAAGCTTCAGAGGCATTCAGAATGCCATGTACAAGATCAAGCCTCAGGTTCTCAAATCTGTGATTGCGTCTGGTTCAGTCCTTCTCAACCACCACCAACACGGCTCTGAAACTCCAATGGCTTCAAGGAAATCCTTCTCTGTGCCGTCCAGCCCCAAAGCAGAGCAAATCCCATTTCCCTCTTTGCCTGTTTACATTCCCACCGGCACCTCTGTCTCTTCTTTCATGCCTGCTCCAGCTGCTGCTGCTGCTGCTTCAGAAAAGCTTGAAGAAACAACAACGCCTCTGACGATTTTCTACAACGGAACCGTCTCTGTTTTCAATGTCCCTCGCGACAAGGCTGAGAGCCTATTGAAGCTTGCCTTGGAAGGAAACTCGGCCAAAGCTGCGGAATCAGCGTTAGCTGTGGATTCAAAACTTGCTCTTCACTCAAGCGACCAGCAACAGCTTCTGGATCCTCTTGACGGAGATTTACCAATTGCCCGCAGAAAGTCTCTGCAGAGGTTCCTAGAGAAGCGCAAAGAAAGGTTGAATTCGGTGTCCCCATTTGCCAGCCATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010033 GO:0010112 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032101 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045088 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

270

Amino Acids

29.58

Weight (kDa)

9.84

Isoelectric Point (pI)

58.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220
fragaria_vesca	FvH4_4g23000 FvH4_4g23000
malus_domestica	MD13G1127100.v1.1 MD16G1127400.v1.1
prunus_persica	Prupe.1G218500_v2.0.a1
pyrus_communis	pycom13g11020 pycom16g10820
rosa_chinensis	RchiOBHm_Chr4g0429271
rosa_laevigata	RLG00000007085
rosa_multiflora	Rmu_sc0000054.1_g000018 Rmu_sc0036209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370890
rosa_rugosa	Rorug04G0234600 Rorug04G0234700
rosa_samantha	Rh4AG290300 Rh4BG296000 Rh4CG311800 Rh4DG293100
rosa_wichuraiana	Rw4G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccII	CGCG	1 cut(s)	579
AciI	CCGC	3 cut(s)	68, 635, 730
AclWI	GGATC	3 cut(s)	192, 695, 708
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	1 cut(s)	778
AcuI	CTGAAG	2 cut(s)	238, 486
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	710
AgsI	TTSAA	6 cut(s)	372, 515, 568, 601, 660, 778
AjnI	CCWGG	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	4 cut(s)	206, 238, 593, 625
AluBI	AGCT	8 cut(s)	166, 252, 485, 511, 604, 632, 650, 694
AluI	AGCT	8 cut(s)	166, 252, 485, 511, 604, 632, 650, 694
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	3 cut(s)	466, 562, 744
AlwI	GGATC	3 cut(s)	192, 695, 708
AlwNI	CAGNNNCTG	2 cut(s)	488, 697
AoxI	GGCC	1 cut(s)	624
ApeKI	GCWGC	6 cut(s)	485, 488, 491, 494, 497, 632
ApoI	RAATTY	1 cut(s)	778
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	765
AxyI	CCTNAGG	1 cut(s)	291
BamHI	GGATCC	1 cut(s)	700
BanI	GGYRCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	6 cut(s)	472, 475, 478, 481, 484, 619
BceAI	ACGGC	2 cut(s)	364, 376
BciT130I	CCWGG	1 cut(s)	151
BcoDI	GTCTC	3 cut(s)	466, 562, 744
BfaI	CTAG	1 cut(s)	755
BfmI	CTRYAG	1 cut(s)	743
BisI	GCNGC	6 cut(s)	486, 489, 492, 495, 498, 633
BlsI	GCNGC	6 cut(s)	487, 490, 493, 496, 499, 634
Bme1390I	CCNGG	1 cut(s)	151
BmiI	GGNNCC	4 cut(s)	454, 553, 702, 752
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	661
BsaBI	GATNNNNATC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	150, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	710
Bse118I	RCCGGY	1 cut(s)	449
Bse21I	CCTNAGG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	150, 609
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	710
BseMII	CTCAG	3 cut(s)	233, 305, 579
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	6 cut(s)	472, 475, 478, 481, 484, 619
Bsh1236I	CGCG	1 cut(s)	579
BshFI	GGCC	1 cut(s)	626
BshNI	GGYRCC	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	450
BslFI	GGGAC	2 cut(s)	557, 772
BslI	CCNNNNNNNGG	1 cut(s)	710
BsmAI	GTCTC	3 cut(s)	466, 562, 744
BsmBI	CGTCTC	1 cut(s)	562
BsmFI	GGGAC	2 cut(s)	557, 772
BsmI	GAATGC	2 cut(s)	261, 274
BsnI	GGCC	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp1407I	TGTACA	1 cut(s)	276
Bsp143I	GATC	3 cut(s)	184, 282, 700
Bsp68I	TCGCGA	1 cut(s)	579
BspACI	CCGC	3 cut(s)	68, 635, 730
BspANI	GGCC	1 cut(s)	626
BspCNI	CTCAG	3 cut(s)	232, 304, 580
BspFNI	CGCG	1 cut(s)	579
BspLI	GGNNCC	4 cut(s)	454, 553, 702, 752
BspMAI	CTGCAG	1 cut(s)	747
BspPI	GGATC	3 cut(s)	192, 695, 708
BspQI	GCTCTTC	1 cut(s)	675
BspT107I	GGYRCC	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	449
BsrGI	TGTACA	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	2 cut(s)	150, 609
BssMI	GATC	3 cut(s)	184, 282, 700
BssSI	CACGAG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	609
Bst2BI	CACGAG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	3 cut(s)	135, 160, 556
Bst6I	CTCTTC	2 cut(s)	469, 675
BstAUI	TGTACA	1 cut(s)	276
BstC8I	GCNNGC	5 cut(s)	142, 477, 606, 730, 799
BstDEI	CTNAG	3 cut(s)	219, 291, 588
BstFNI	CGCG	1 cut(s)	579
BstHHI	GCGC	1 cut(s)	765
BstKTI	GATC	3 cut(s)	187, 285, 703
BstMAI	GTCTC	3 cut(s)	466, 562, 744
BstMBI	GATC	3 cut(s)	184, 282, 700
BstMWI	GCNNNNNNNGC	9 cut(s)	249, 258, 485, 491, 494, 497, 632, 641, 803
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	743
BstUI	CGCG	1 cut(s)	579
BstV1I	GCAGC	6 cut(s)	472, 475, 478, 481, 484, 619
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
Bsu36I	CCTNAGG	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	626
BtgZI	GCGATG	1 cut(s)	224
BtuMI	TCGCGA	1 cut(s)	579
Cac8I	GCNNGC	5 cut(s)	142, 477, 606, 730, 799
CaiI	CAGNNNCTG	2 cut(s)	488, 697
CfoI	GCGC	1 cut(s)	765
Cfr10I	RCCGGY	1 cut(s)	449
CseI	GACGC	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	5 cut(s)	145, 181, 274, 472, 803
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	3 cut(s)	219, 291, 588
DpnI	GATC	3 cut(s)	186, 284, 702
DpnII	GATC	3 cut(s)	184, 282, 700
EaeI	YGGCCR	1 cut(s)	624
Eam1104I	CTCTTC	2 cut(s)	469, 675
EarI	CTCTTC	2 cut(s)	469, 675
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	2 cut(s)	238, 486
Eco81I	CCTNAGG	1 cut(s)	291
EcoICRI	GAGCTC	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	778
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	609
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	609
Esp3I	CGTCTC	1 cut(s)	562
FaeI	CATG	5 cut(s)	148, 184, 277, 475, 806
FaiI	YATR	5 cut(s)	146, 182, 275, 473, 804
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FaqI	GGGAC	2 cut(s)	557, 772
FatI	CATG	5 cut(s)	144, 180, 273, 471, 802
FauI	CCCGC	2 cut(s)	75, 737
Fnu4HI	GCNGC	6 cut(s)	486, 489, 492, 495, 498, 633
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	6 cut(s)	486, 489, 492, 495, 498, 633
FspBI	CTAG	1 cut(s)	755
GlaI	GCGC	1 cut(s)	764
GluI	GCNGC	6 cut(s)	486, 489, 492, 495, 498, 633
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	626
HapII	CCGG	1 cut(s)	450
HgaI	GACGC	1 cut(s)	303
HhaI	GCGC	1 cut(s)	765
Hin1II	CATG	5 cut(s)	148, 184, 277, 475, 806
Hin6I	GCGC	1 cut(s)	763
HinP1I	GCGC	1 cut(s)	763
HindIII	AAGCTT	3 cut(s)	250, 509, 602
HinfI	GANTC	3 cut(s)	4, 638, 656
HpaII	CCGG	1 cut(s)	450
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	5 cut(s)	257, 267, 355, 505, 534
Hpy188III	TCNNGA	5 cut(s)	194, 226, 578, 698, 707
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	6 cut(s)	37, 210, 245, 338, 391, 608
HpyCH4III	ACNGT	3 cut(s)	135, 160, 556
HpyCH4V	TGCA	1 cut(s)	745
HpyF10VI	GCNNNNNNNGC	9 cut(s)	249, 258, 485, 491, 494, 497, 632, 641, 803
HpyF3I	CTNAG	3 cut(s)	219, 291, 588
Hsp92II	CATG	5 cut(s)	148, 184, 277, 475, 806
HspAI	GCGC	1 cut(s)	763
Kzo9I	GATC	3 cut(s)	184, 282, 700
LguI	GCTCTTC	1 cut(s)	675
LmnI	GCTCC	2 cut(s)	92, 484
Lsp1109I	GCAGC	6 cut(s)	472, 475, 478, 481, 484, 619
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	755
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	3 cut(s)	186, 284, 702
MboI	GATC	3 cut(s)	184, 282, 700
MboII	GAAGA	4 cut(s)	166, 456, 527, 662
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	1 cut(s)	700
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	3 cut(s)	122, 723, 778
MmeI	TCCRAC	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	2 cut(s)	20, 80
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	1 cut(s)	151
MunI	CAATTG	1 cut(s)	723
Mva1269I	GAATGC	2 cut(s)	261, 274
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	579
MwoI	GCNNNNNNNGC	9 cut(s)	249, 258, 485, 491, 494, 497, 632, 641, 803
NdeII	GATC	3 cut(s)	184, 282, 700
NlaIII	CATG	5 cut(s)	148, 184, 277, 475, 806
NlaIV	GGNNCC	4 cut(s)	454, 553, 702, 752
NmeAIII	GCCGAG	1 cut(s)	602
NmuCI	GTSAC	1 cut(s)	194
NruI	TCGCGA	1 cut(s)	579
NspI	RCATGY	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	675
PcsI	WCGNNNNNNNCGW	1 cut(s)	533
PctI	GAATGC	2 cut(s)	261, 274
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	3 cut(s)	4, 638, 656
PkrI	GCNGC	6 cut(s)	487, 490, 493, 496, 499, 634
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	4 cut(s)	454, 553, 702, 752
PstI	CTGCAG	1 cut(s)	747
PstNI	CAGNNNCTG	2 cut(s)	488, 697
PsuI	RGATCY	1 cut(s)	700
PvuII	CAGCTG	1 cut(s)	485
RruI	TCGCGA	1 cut(s)	579
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SacI	GAGCTC	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	675
SaqAI	TTAA	2 cut(s)	20, 80
SatI	GCNGC	6 cut(s)	486, 489, 492, 495, 498, 633
Sau3AI	GATC	3 cut(s)	184, 282, 700
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	168
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	743
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
Sse9I	AATT	3 cut(s)	122, 723, 778
SsiI	CCGC	3 cut(s)	68, 635, 730
SspMI	CTAG	1 cut(s)	755
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	3 cut(s)	135, 160, 556
TaqI	TCGA	1 cut(s)	168
TasI	AATT	3 cut(s)	122, 723, 778
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	3 cut(s)	4, 638, 656
Tru1I	TTAA	2 cut(s)	20, 80
Tru9I	TTAA	2 cut(s)	20, 80
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	6 cut(s)	485, 488, 491, 494, 497, 632
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	17, 227, 460
TspGWI	ACGGA	2 cut(s)	564, 726
XapI	RAATTY	1 cut(s)	778
XceI	RCATGY	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.