AT5G13240

Repressor of RNA polymerase III transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010817
Physical Location & Seq
Reverse (-)
4225005 .. 4227717
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13240.1

Sequence Viewer

Length: 675 bp
ATGAAGTTCTTGGAGTACACTAACCTAGACAGATTGAATGTTTTTCTGGGTCATCTTAATCTCGGGGAAAGGACTATCAAAGGTTGCTTGGAAGCTTATTCTTGCAAACATGCAGGAAGTGATAAAAGATTGTCTCTTAGTTTGGAGAATGAGATGCTTGATTATCTTGGGAAATCTTCTGACACCGACTCTTCTTCACCCGTTGATCTCTTGTTAAGCAGATCAAGTCGAAAGGCTTTGATCTACTTGGTTCTTACGCTCTATCAAATGTATCCGGACTACGATTTCAGCGCTGTCAAAGCACATCAGTTTTTCTCGGAGGAAAGCTGGGACACCTTTAAGCAGATTTTTAACAACTATATGTTTGAAGCTTCTAAGGAATGGACTGAGAGGAATGAGGATGGTTCCCTTCTTGAGGTGATCTACAAGGCTCTTGATGAGGTCGTAAAACTAGCTGAATGTGAGATATATGTTTACAATCCAAATCCTAATGCTGATCCTTTCCTCGAGGAAGGAGCAATATGGTCTTTCTGTTTCTTATTCTACAACCGAAAACTGAAGCGCGTTGCGGGTTTTCGTTTCTCCTGCACGAGTAACCTGGCAAATGATGCATTTCTCACTGACAGTCCTCCATATGAAGAGGATGAAGAGATCTTTGCCGACATGGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf1

Protein Analysis

224

Amino Acids

26.0

Weight (kDa)

4.57

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf1 PF09174 26 - 192 1.1e-50 Maf1 regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 506
AccII CGCG 1 cut(s) 564
AccIII TCCGGA 1 cut(s) 274
AciI CCGC 1 cut(s) 569
AclWI GGATC 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 578
AfaI GTAC 1 cut(s) 17
AfeI AGCGCT 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 415
AgsI TTSAA 2 cut(s) 37, 368
AjnI CCWGG 1 cut(s) 597
AluBI AGCT 4 cut(s) 95, 327, 371, 455
AluI AGCT 4 cut(s) 95, 327, 371, 455
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 1 cut(s) 491
Ama87I CYCGRG 2 cut(s) 62, 506
Aor13HI TCCGGA 1 cut(s) 274
Aor51HI AGCGCT 1 cut(s) 292
AspLEI GCGC 2 cut(s) 293, 564
AsuHPI GGTGA 2 cut(s) 189, 430
AvaI CYCGRG 2 cut(s) 62, 506
BauI CACGAG 1 cut(s) 589
BccI CCATC 1 cut(s) 395
BciT130I CCWGG 1 cut(s) 599
BciVI GTATCC 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 26, 452
BfoI RGCGCY 1 cut(s) 294
BfuI GTATCC 1 cut(s) 282
BglII AGATCT 1 cut(s) 651
Bme1390I CCNGG 1 cut(s) 599
BmeT110I CYCGRG 2 cut(s) 62, 506
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 1 cut(s) 599
BmsI GCATC 2 cut(s) 144, 598
BpuEI CTTGAG 1 cut(s) 434
BsaWI WCCGGW 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 415
BseAI TCCGGA 1 cut(s) 274
BseBI CCWGG 1 cut(s) 599
BseGI GGATG 2 cut(s) 406, 649
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMII CTCAG 1 cut(s) 378
BseYI CCCAGC 1 cut(s) 327
BsgI GTGCAG 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 564
BsiHKCI CYCGRG 2 cut(s) 62, 506
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 415
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 344
BsoBI CYCGRG 2 cut(s) 62, 506
Bsp13I TCCGGA 1 cut(s) 274
Bsp143I GATC 6 cut(s) 205, 221, 240, 420, 496, 651
BspACI CCGC 1 cut(s) 569
BspCNI CTCAG 1 cut(s) 379
BspEI TCCGGA 1 cut(s) 274
BspFNI CGCG 1 cut(s) 564
BspLI GGNNCC 1 cut(s) 406
BspPI GGATC 1 cut(s) 491
BssMI GATC 6 cut(s) 205, 221, 240, 420, 496, 651
BssSI CACGAG 1 cut(s) 589
Bst2BI CACGAG 1 cut(s) 589
Bst2UI CCWGG 1 cut(s) 599
Bst4CI ACNGT 1 cut(s) 626
Bst6I CTCTTC 3 cut(s) 196, 633, 642
BstAPI GCANNNNNTGC 1 cut(s) 608
BstDEI CTNAG 3 cut(s) 137, 375, 387
BstENI CCTNNNNNAGG 1 cut(s) 413
BstF5I GGATG 2 cut(s) 406, 649
BstFNI CGCG 1 cut(s) 564
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 2 cut(s) 293, 564
BstKTI GATC 6 cut(s) 208, 224, 243, 423, 499, 654
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 6 cut(s) 205, 221, 240, 420, 496, 651
BstMWI GCNNNNNNNGC 2 cut(s) 299, 608
BstNI CCWGG 1 cut(s) 599
BstNSI RCATGY 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 597
BstUI CGCG 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 651
BstYI RGATCY 1 cut(s) 651
BsuI GTATCC 1 cut(s) 282
BtsCI GGATG 2 cut(s) 406, 649
BtsIMutI CAGTG 1 cut(s) 618
CfoI GCGC 2 cut(s) 293, 564
Csp6I GTAC 1 cut(s) 16
CviAII CATG 2 cut(s) 110, 664
CviJI RGCY 6 cut(s) 95, 236, 327, 371, 431, 455
CviKI_1 RGCY 6 cut(s) 95, 236, 327, 371, 431, 455
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 3 cut(s) 137, 375, 387
DpnI GATC 6 cut(s) 207, 223, 242, 422, 498, 653
DpnII GATC 6 cut(s) 205, 221, 240, 420, 496, 651
Eam1104I CTCTTC 3 cut(s) 196, 633, 642
EarI CTCTTC 3 cut(s) 196, 633, 642
Eco47III AGCGCT 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 578
Eco88I CYCGRG 2 cut(s) 62, 506
EcoNI CCTNNNNNAGG 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 597
EcoT22I ATGCAT 1 cut(s) 613
FaeI CATG 2 cut(s) 113, 667
FaqI GGGAC 1 cut(s) 344
FatI CATG 2 cut(s) 109, 663
FauI CCCGC 1 cut(s) 562
FauNDI CATATG 1 cut(s) 634
FokI GGATG 2 cut(s) 413, 656
FspBI CTAG 2 cut(s) 26, 452
GlaI GCGC 2 cut(s) 292, 563
GsaI CCCAGC 1 cut(s) 331
HaeII RGCGCY 1 cut(s) 294
HapII CCGG 1 cut(s) 275
HhaI GCGC 2 cut(s) 293, 564
Hin1II CATG 2 cut(s) 113, 667
Hin6I GCGC 2 cut(s) 291, 562
HinP1I GCGC 2 cut(s) 291, 562
HindIII AAGCTT 2 cut(s) 93, 369
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 275
HphI GGTGA 2 cut(s) 189, 430
Hpy166II GTNNAC 2 cut(s) 18, 475
Hpy188I TCNGA 2 cut(s) 181, 319
Hpy188III TCNNGA 3 cut(s) 275, 413, 434
Hpy8I GTNNAC 2 cut(s) 18, 475
HpyAV CCTTC 2 cut(s) 419, 506
HpyCH4III ACNGT 1 cut(s) 626
HpyCH4V TGCA 4 cut(s) 105, 113, 588, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 608
HpyF3I CTNAG 3 cut(s) 137, 375, 387
Hsp92II CATG 2 cut(s) 113, 667
HspAI GCGC 2 cut(s) 291, 562
Kpn2I TCCGGA 1 cut(s) 274
Kzo9I GATC 6 cut(s) 205, 221, 240, 420, 496, 651
LmnI GCTCC 1 cut(s) 515
LpnPI CCDG 7 cut(s) 32, 99, 288, 313, 584, 598, 611
LweI GCATC 2 cut(s) 144, 598
MaeI CTAG 2 cut(s) 26, 452
MaeIII GTNAC 1 cut(s) 593
MalI GATC 6 cut(s) 207, 223, 242, 422, 498, 653
MboI GATC 6 cut(s) 205, 221, 240, 420, 496, 651
MboII GAAGA 5 cut(s) 168, 183, 186, 650, 659
MflI RGATCY 1 cut(s) 651
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 9 cut(s) 313, 384, 391, 409, 433, 502, 515, 634, 639
Mph1103I ATGCAT 1 cut(s) 613
MroI TCCGGA 1 cut(s) 274
MseI TTAA 4 cut(s) 57, 215, 339, 351
MslI CAYNNNNRTG 1 cut(s) 668
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 599
MvaI CCWGG 1 cut(s) 599
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 2 cut(s) 299, 608
NdeI CATATG 1 cut(s) 634
NdeII GATC 6 cut(s) 205, 221, 240, 420, 496, 651
NlaIII CATG 2 cut(s) 113, 667
NlaIV GGNNCC 1 cut(s) 406
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 1 cut(s) 113
PaeR7I CTCGAG 1 cut(s) 506
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 597
PspFI CCCAGC 1 cut(s) 327
PspGI CCWGG 1 cut(s) 597
PspN4I GGNNCC 1 cut(s) 406
PspXI VCTCGAGB 1 cut(s) 506
PsuI RGATCY 1 cut(s) 651
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 668
SaqAI TTAA 4 cut(s) 57, 215, 339, 351
Sau3AI GATC 6 cut(s) 205, 221, 240, 420, 496, 651
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 599
SfaNI GCATC 2 cut(s) 144, 598
Sfr274I CTCGAG 1 cut(s) 506
SlaI CTCGAG 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 668
SmlI CTYRAG 2 cut(s) 413, 506
SmoI CTYRAG 2 cut(s) 413, 506
SsiI CCGC 1 cut(s) 569
SspMI CTAG 2 cut(s) 26, 452
StyD4I CCNGG 1 cut(s) 597
TaaI ACNGT 1 cut(s) 626
TaqI TCGA 2 cut(s) 229, 507
TatI WGTACW 1 cut(s) 15
Tru1I TTAA 4 cut(s) 57, 215, 339, 351
Tru9I TTAA 4 cut(s) 57, 215, 339, 351
TscAI CASTG 1 cut(s) 625
TspDTI ATGAA 3 cut(s) 17, 651, 660
TspRI CASTG 1 cut(s) 625
XagI CCTNNNNNAGG 1 cut(s) 413
XceI RCATGY 1 cut(s) 113
XhoI CTCGAG 1 cut(s) 506
XspI CTAG 2 cut(s) 26, 452
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.