Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010817

Physical Location & Seq

Genomic Coordinates Forward (+)

1855084 .. 1857988

Gene Structure 2905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02690.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCATCAACACGCTAAAACTGCGGGGGGCTTGACTTTGAAGAGTAATCCACGAAGCACCAACCGCAAAGCAATTCAAAATTTGGAATATTCGAATTTTGGGGGCTGTCCGAAACGTTCTGGATCCCGTTCTTACCGAACCCTAACGCCCAAATCGGAACTCTCGTCGTCTTCGCCTTTTCCAATTCGTTATAATTTCCTCTCAGGATCTCCTTTTTCTGTAATAATTGAGTGCTTTCGACATTCGCTGAGCATGAAGTTCTTGGAATACACCCCGCTGGAGCGATTAAATGATTTCTTTAGTCATTTGAATCTCGGAGAGCGAACCATTAAGGGTTGTCTTGAAGCTTACTCTTGCAAACACACCGGATCCGATAAGAAATTGTCTCTCAGTTTGGAGAATGAGATTCTTGATTATCTTGGGAAATCGTCTGACAGTGATTCTTCCTCACCTGCTGAATTCCTGCTGACTAGATCCAGCCGGAAGACATTGATTTACCTGGTTTTGACACTCTATCACTTGTATCCGGACTATGACTTCAGTGCAGTAAATGCTCATCAGTTCTTCACAGAGGAAAGCTGGGACAGTTTTAAGCAGATTTTTGATACCTACATGTTTGAAGCATCAAAGGAATGGACAGAGACAAATGAGGGCAGTTCCTTGCTGGAAGCCCTTTACAAGGCTTTGGATGAGGTTGTTAGACTAGCGGAATGTGAAGTTTACAGCTACATTCCAGACTCGGATGCTGATCCGTTTCTTGAGAGAGGATCTATATGGTCGTTCAATTTCTTTTTCTACAATAGGAAACTTAAGCGTGTCGTGAGCTTCCGTGTCTGCTGTTTAAGTAACTTGGTGGCTGATGGATATCGGATGGACGAGTTGCGGTATGATGAAGATGGAGAAATTTTCGACAACATGGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Maf1

Protein Analysis

309

Amino Acids

35.5

Weight (kDa)

5.48

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13240 AT5G13240 AT5G13240
fragaria_vesca	FvH4_4g26160
malus_domestica	MD13G1028600.v1.1 MD16G1031300.v1.1
prunus_persica	Prupe.1G321700_v2.0.a1 Prupe.1G321700_v2.0.a1
pyrus_communis	pycom13g02690 pycom16g02730
rosa_chinensis	RchiOBHm_Chr4g0433731
rosa_multiflora	Rmu_sc0002912.1_g000001 Rmu_sc0006151.1_g000004
rosa_roxburghii	Rroxscaffold_5G00375170
rosa_rugosa	Rorug04G0271300
rosa_samantha	Rh4AG325600 Rh4BG333400 Rh4CG348600 Rh4DG330000
rosa_wichuraiana	Rw4G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	460
AccIII	TCCGGA	1 cut(s)	526
AciI	CCGC	5 cut(s)	23, 64, 275, 707, 883
AclI	AACGTT	1 cut(s)	115
AclWI	GGATC	8 cut(s)	117, 130, 214, 363, 376, 468, 743, 775
AcsI	RAATTY	4 cut(s)	79, 94, 458, 903
AcuI	CTGAAG	1 cut(s)	523
AfiI	CCNNNNNNNGG	1 cut(s)	679
AflII	CTTAAG	1 cut(s)	809
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	6 cut(s)	40, 77, 310, 344, 620, 784
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	4 cut(s)	347, 579, 726, 825
AluI	AGCT	4 cut(s)	347, 579, 726, 825
Alw26I	GTCTC	2 cut(s)	390, 635
AlwI	GGATC	8 cut(s)	117, 130, 214, 363, 376, 468, 743, 775
Aor13HI	TCCGGA	1 cut(s)	526
ApoI	RAATTY	4 cut(s)	79, 94, 458, 903
AsuHPI	GGTGA	1 cut(s)	441
AsuII	TTCGAA	1 cut(s)	92
BamHI	GGATCC	2 cut(s)	122, 368
BbsI	GAAGAC	2 cut(s)	162, 491
BccI	CCATC	3 cut(s)	854, 865, 890
BciT130I	CCWGG	1 cut(s)	500
BciVI	GTATCC	1 cut(s)	534
BcoDI	GTCTC	2 cut(s)	390, 635
BfaI	CTAG	2 cut(s)	471, 704
BfrI	CTTAAG	1 cut(s)	809
BfuAI	ACCTGC	1 cut(s)	460
BfuI	GTATCC	1 cut(s)	534
BlpI	GCTNAGC	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	500
BmiI	GGNNCC	2 cut(s)	124, 370
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	3 cut(s)	13, 632, 733
BpiI	GAAGAC	2 cut(s)	162, 491
BpmI	CTGGAG	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	248
Bpu14I	TTCGAA	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	779
BsaBI	GATNNNNATC	2 cut(s)	747, 864
BsaWI	WCCGGW	2 cut(s)	365, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse8I	GATNNNNATC	2 cut(s)	747, 864
BseAI	TCCGGA	1 cut(s)	526
BseBI	CCWGG	1 cut(s)	500
BseGI	GGATG	3 cut(s)	694, 748, 876
BseJI	GATNNNNATC	2 cut(s)	747, 864
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseMII	CTCAG	3 cut(s)	216, 239, 403
BseYI	CCCAGC	1 cut(s)	579
BsgI	GTGCAG	1 cut(s)	564
BsiSI	CCGG	3 cut(s)	366, 481, 527
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	1 cut(s)	679
BsmAI	GTCTC	2 cut(s)	390, 635
BsmFI	GGGAC	1 cut(s)	596
Bsp119I	TTCGAA	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	526
Bsp143I	GATC	6 cut(s)	122, 206, 368, 473, 748, 767
Bsp1720I	GCTNAGC	1 cut(s)	248
BspACI	CCGC	5 cut(s)	23, 64, 275, 707, 883
BspCNI	CTCAG	3 cut(s)	215, 240, 402
BspEI	TCCGGA	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	124, 370
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	8 cut(s)	117, 130, 214, 363, 376, 468, 743, 775
BspT104I	TTCGAA	1 cut(s)	92
BspTI	CTTAAG	1 cut(s)	809
BssMI	GATC	6 cut(s)	122, 206, 368, 473, 748, 767
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	2 cut(s)	437, 587
Bst6I	CTCTTC	1 cut(s)	35
BstAFI	CTTAAG	1 cut(s)	809
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstBI	TTCGAA	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	202, 248, 389
BstENI	CCTNNNNNAGG	1 cut(s)	677
BstF5I	GGATG	3 cut(s)	694, 748, 876
BstKTI	GATC	6 cut(s)	125, 209, 371, 476, 751, 770
BstMAI	GTCTC	2 cut(s)	390, 635
BstMBI	GATC	6 cut(s)	122, 206, 368, 473, 748, 767
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 63, 551
BstNI	CCWGG	1 cut(s)	500
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	498
BstV2I	GAAGAC	2 cut(s)	162, 491
BstX2I	RGATCY	5 cut(s)	122, 206, 368, 473, 767
BstYI	RGATCY	5 cut(s)	122, 206, 368, 473, 767
BsuI	GTATCC	1 cut(s)	534
BtsCI	GGATG	3 cut(s)	694, 748, 876
BtsIMutI	CAGTG	2 cut(s)	442, 547
BveI	ACCTGC	1 cut(s)	460
CsiI	ACCWGGT	1 cut(s)	498
CviAII	CATG	3 cut(s)	253, 613, 916
DdeI	CTNAG	3 cut(s)	202, 248, 389
DpnI	GATC	6 cut(s)	124, 208, 370, 475, 750, 769
DpnII	GATC	6 cut(s)	122, 206, 368, 473, 748, 767
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	866
Eco57I	CTGAAG	1 cut(s)	523
EcoNI	CCTNNNNNAGG	1 cut(s)	677
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	498
EcoRV	GATATC	1 cut(s)	866
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	256, 616, 919
FaiI	YATR	8 cut(s)	192, 254, 534, 614, 773, 775, 888, 917
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	3 cut(s)	252, 612, 915
FauI	CCCGC	2 cut(s)	16, 282
FokI	GGATG	3 cut(s)	701, 755, 883
FspBI	CTAG	2 cut(s)	471, 704
GsaI	CCCAGC	1 cut(s)	583
GsuI	CTGGAG	1 cut(s)	299
HapII	CCGG	3 cut(s)	366, 481, 527
Hin1II	CATG	3 cut(s)	256, 616, 919
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	4 cut(s)	310, 406, 440, 737
HpaII	CCGG	3 cut(s)	366, 481, 527
HphI	GGTGA	1 cut(s)	441
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	7 cut(s)	111, 157, 317, 373, 433, 742, 870
Hpy188III	TCNNGA	8 cut(s)	120, 204, 341, 410, 527, 734, 758, 820
Hpy8I	GTNNAC	1 cut(s)	721
Hpy99I	CGWCG	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	437, 587
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	3 cut(s)	4, 357, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 63, 551
HpyF3I	CTNAG	3 cut(s)	202, 248, 389
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	3 cut(s)	256, 616, 919
Kpn2I	TCCGGA	1 cut(s)	526
Kzo9I	GATC	6 cut(s)	122, 206, 368, 473, 748, 767
LmnI	GCTCC	1 cut(s)	280
LweI	GCATC	3 cut(s)	13, 632, 733
MabI	ACCWGGT	1 cut(s)	498
MaeI	CTAG	2 cut(s)	471, 704
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	845
MalI	GATC	6 cut(s)	124, 208, 370, 475, 750, 769
MboI	GATC	6 cut(s)	122, 206, 368, 473, 748, 767
MboII	GAAGA	6 cut(s)	52, 162, 435, 496, 556, 905
MflI	RGATCY	5 cut(s)	122, 206, 368, 473, 767
MlyI	GAGTC	1 cut(s)	731
MnlI	CCTC	6 cut(s)	209, 457, 565, 643, 685, 758
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	526
MseI	TTAA	5 cut(s)	287, 330, 591, 810, 842
MspA1I	CMGCKG	1 cut(s)	277
MspCI	CTTAAG	1 cut(s)	809
MspI	CCGG	3 cut(s)	366, 481, 527
MspR9I	CCNGG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	3 cut(s)	20, 63, 551
NdeII	GATC	6 cut(s)	122, 206, 368, 473, 748, 767
NlaIII	CATG	3 cut(s)	256, 616, 919
NlaIV	GGNNCC	2 cut(s)	124, 370
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	616
NspV	TTCGAA	1 cut(s)	92
PaqCI	CACCTGC	1 cut(s)	460
PciI	ACATGT	1 cut(s)	612
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	310, 406, 440
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
PscI	ACATGT	1 cut(s)	612
PsiI	TTATAA	1 cut(s)	192
Psp1406I	AACGTT	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	2 cut(s)	124, 370
PsuI	RGATCY	5 cut(s)	122, 206, 368, 473, 767
SaqAI	TTAA	5 cut(s)	287, 330, 591, 810, 842
Sau3AI	GATC	6 cut(s)	122, 206, 368, 473, 748, 767
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	1 cut(s)	500
SetI	ASST	9 cut(s)	118, 349, 454, 501, 581, 611, 696, 728, 827
SexAI	ACCWGGT	1 cut(s)	498
SfaNI	GCATC	3 cut(s)	13, 632, 733
SfuI	TTCGAA	1 cut(s)	92
SmlI	CTYRAG	2 cut(s)	758, 809
SmoI	CTYRAG	2 cut(s)	758, 809
SsiI	CCGC	5 cut(s)	23, 64, 275, 707, 883
SspI	AATATT	1 cut(s)	89
SspMI	CTAG	2 cut(s)	471, 704
StyD4I	CCNGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	437, 587
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	3 cut(s)	92, 238, 909
TfiI	GAWTC	3 cut(s)	310, 406, 440
Tru1I	TTAA	5 cut(s)	287, 330, 591, 810, 842
Tru9I	TTAA	5 cut(s)	287, 330, 591, 810, 842
TscAI	CASTG	2 cut(s)	442, 547
TspDTI	ATGAA	2 cut(s)	269, 906
TspGWI	ACGGA	2 cut(s)	741, 818
TspRI	CASTG	2 cut(s)	442, 547
Vha464I	CTTAAG	1 cut(s)	809
XagI	CCTNNNNNAGG	1 cut(s)	677
XapI	RAATTY	4 cut(s)	79, 94, 458, 903
XceI	RCATGY	1 cut(s)	616
XspI	CTAG	2 cut(s)	471, 704
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.