Rh4AG325600

Repressor of RNA polymerase III transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0010817
Physical Location & Seq
Forward (+)
63727362 .. 63730753
3392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG325600.1

Sequence Viewer

Length: 498 bp
ATGAAGTACTTAGAATACACACCCTTGGAGCGATTAAATGATTTCTTTAGTCATTTAAATCTTGGAGAGAGAACCATTAAGGGATGTCTTGAAGCTTACTCTTGTAAACACACGGGATCGGATAAGAAACTGTCTCTGAGTTTGGAGAATGAGATTCTTGACTATATCGGAAAATCTTCTGACACCGACTCTTCCTCACCTGCTGAGTTCCTTCTGAGCAGATCCAGCCGGAAGACATTGATTTACCTGGTCTTGACCCTCTATCACTTGTATCCGGACTATGACTTCAGTGCCATCAATGCTCACCAGTTCTTCACAGAGGAAACCTGGGACAGTTTTAAGCAGATTTTTGATACCTATATGGTGGAAGCATCAAAGGAATGGACAGAGACCAATGAGGGTAGTTCCCTGCTGGATACCTTGTACAAGGCTTTGGATGAGGTGAGCATATTTTTAAAGAAGCGATTGCATGTCGCTGGAGGAGGCAATTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf1

Protein Analysis

165

Amino Acids

19.02

Weight (kDa)

5.09

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf1 PF09174 26 - 148 8.1e-27 Maf1 regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 208
Acc36I ACCTGC 1 cut(s) 208
AccIII TCCGGA 1 cut(s) 274
AclWI GGATC 2 cut(s) 124, 216
AcuI CTGAAG 1 cut(s) 271
AfaI GTAC 2 cut(s) 8, 425
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 2 cut(s) 246, 326
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 138, 383
AlwI GGATC 2 cut(s) 124, 216
Aor13HI TCCGGA 1 cut(s) 274
Asp700I GAANNNNTTC 1 cut(s) 175
AsuHPI GGTGA 3 cut(s) 189, 296, 454
BbsI GAAGAC 1 cut(s) 239
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 2 cut(s) 248, 328
BciVI GTATCC 2 cut(s) 282, 409
BcoDI GTCTC 2 cut(s) 138, 383
BfuAI ACCTGC 1 cut(s) 208
BfuI GTATCC 2 cut(s) 282, 409
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 2 cut(s) 248, 328
BmrFI CCNGG 2 cut(s) 248, 328
BmsI GCATC 1 cut(s) 380
BpiI GAAGAC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 24, 327
BsaWI WCCGGW 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 307
BseAI TCCGGA 1 cut(s) 274
BseBI CCWGG 2 cut(s) 248, 328
BseDI CCNNGG 2 cut(s) 24, 327
BseGI GGATG 2 cut(s) 89, 442
BseMII CTCAG 3 cut(s) 128, 195, 206
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 495
BsiSI CCGG 2 cut(s) 229, 275
BslFI GGGAC 1 cut(s) 344
BsmAI GTCTC 2 cut(s) 138, 383
BsmFI GGGAC 1 cut(s) 344
Bso31I GGTCTC 1 cut(s) 383
Bsp13I TCCGGA 1 cut(s) 274
Bsp1407I TGTACA 1 cut(s) 423
Bsp143I GATC 2 cut(s) 116, 221
BspCNI CTCAG 3 cut(s) 129, 196, 207
BspEI TCCGGA 1 cut(s) 274
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 2 cut(s) 124, 216
BspTNI GGTCTC 1 cut(s) 383
BsrGI TGTACA 1 cut(s) 423
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 24, 327
BssMI GATC 2 cut(s) 116, 221
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 2 cut(s) 248, 328
Bst4CI ACNGT 2 cut(s) 132, 335
Bst6I CTCTTC 1 cut(s) 196
BstAUI TGTACA 1 cut(s) 423
BstDEI CTNAG 4 cut(s) 10, 137, 204, 215
BstF5I GGATG 2 cut(s) 89, 442
BstKTI GATC 2 cut(s) 119, 224
BstMAI GTCTC 2 cut(s) 138, 383
BstMBI GATC 2 cut(s) 116, 221
BstMWI GCNNNNNNNGC 2 cut(s) 225, 299
BstNI CCWGG 2 cut(s) 248, 328
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 246, 326
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuI GTATCC 2 cut(s) 282, 409
BtsCI GGATG 2 cut(s) 89, 442
BtsIMutI CAGTG 1 cut(s) 295
BveI ACCTGC 1 cut(s) 208
CsiI ACCWGGT 1 cut(s) 246
Csp6I GTAC 2 cut(s) 7, 424
CviAII CATG 1 cut(s) 470
CviJI RGCY 3 cut(s) 95, 228, 431
CviKI_1 RGCY 3 cut(s) 95, 228, 431
CviQI GTAC 2 cut(s) 7, 424
DdeI CTNAG 4 cut(s) 10, 137, 204, 215
DpnI GATC 2 cut(s) 118, 223
DpnII GATC 2 cut(s) 116, 221
DraI TTTAAA 2 cut(s) 57, 456
Eam1104I CTCTTC 1 cut(s) 196
EarI CTCTTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 246, 326
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 473
FaiI YATR 7 cut(s) 165, 282, 360, 362, 449, 471, 494
FaqI GGGAC 1 cut(s) 344
FatI CATG 1 cut(s) 469
FokI GGATG 2 cut(s) 96, 449
GsuI CTGGAG 1 cut(s) 498
HapII CCGG 2 cut(s) 229, 275
Hin1II CATG 1 cut(s) 473
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 2 cut(s) 154, 188
HpaII CCGG 2 cut(s) 229, 275
HphI GGTGA 3 cut(s) 189, 296, 454
Hpy166II GTNNAC 1 cut(s) 107
Hpy188I TCNGA 5 cut(s) 121, 138, 170, 181, 216
Hpy188III TCNNGA 4 cut(s) 89, 158, 253, 275
Hpy8I GTNNAC 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 2 cut(s) 132, 335
HpyCH4V TGCA 1 cut(s) 469
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 299
HpyF3I CTNAG 4 cut(s) 10, 137, 204, 215
Hsp92II CATG 1 cut(s) 473
Kpn2I TCCGGA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 116, 221
LmnI GCTCC 1 cut(s) 28
LweI GCATC 1 cut(s) 380
MabI ACCWGGT 1 cut(s) 246
MalI GATC 2 cut(s) 118, 223
MboI GATC 2 cut(s) 116, 221
MboII GAAGA 4 cut(s) 168, 183, 244, 304
MflI RGATCY 1 cut(s) 221
MluCI AATT 1 cut(s) 487
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 7 cut(s) 205, 269, 313, 391, 433, 473, 476
MroI TCCGGA 1 cut(s) 274
MroXI GAANNNNTTC 1 cut(s) 175
MseI TTAA 5 cut(s) 35, 56, 78, 339, 455
MspI CCGG 2 cut(s) 229, 275
MspR9I CCNGG 2 cut(s) 248, 328
MvaI CCWGG 2 cut(s) 248, 328
MwoI GCNNNNNNNGC 2 cut(s) 225, 299
NdeII GATC 2 cut(s) 116, 221
NlaIII CATG 1 cut(s) 473
NspI RCATGY 1 cut(s) 473
PaqCI CACCTGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 154
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
Psp6I CCWGG 2 cut(s) 246, 326
PspGI CCWGG 2 cut(s) 246, 326
PsuI RGATCY 1 cut(s) 221
RsaI GTAC 2 cut(s) 8, 425
RsaNI GTAC 2 cut(s) 7, 424
SaqAI TTAA 5 cut(s) 35, 56, 78, 339, 455
Sau3AI GATC 2 cut(s) 116, 221
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 248, 328
SetI ASST 7 cut(s) 97, 202, 249, 329, 359, 422, 444
SexAI ACCWGGT 1 cut(s) 246
SfaNI GCATC 1 cut(s) 380
SmiI ATTTAAAT 1 cut(s) 57
Sse9I AATT 1 cut(s) 487
StyD4I CCNGG 2 cut(s) 246, 326
StyI CCWWGG 1 cut(s) 24
SwaI ATTTAAAT 1 cut(s) 57
TaaI ACNGT 2 cut(s) 132, 335
TasI AATT 1 cut(s) 487
TatI WGTACW 2 cut(s) 6, 423
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 5 cut(s) 35, 56, 78, 339, 455
Tru9I TTAA 5 cut(s) 35, 56, 78, 339, 455
TscAI CASTG 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 295
XceI RCATGY 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 175
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.