Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002912.1

Orthogroup ID

OG0010817

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1764

Gene Structure 1764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002912.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

attcttgactatattggaaaatcttctgacaccgactcttcctcacctgctgagttccttctgagcagatccagccggaagacattgatttacctggtcttgaccctctatcacttgtatccggactatgacttcagtgccatcaatgctcaccagttcttcacagaggaaacctgggacagttttaagcagatttttgatacctatatggtggaagcatcaaaggaatggacagagacaaaggagggtagttccttgcttgatgccttgtacaaggctttggatgaggttgttggattagcagattgcgaagtttatggttacaatcctgatcctgatactgatccgtttccggaaagaggagctgtatggtcattcaatttctttttctacaatagaaaactgaaaagggttgtgagtttccgtatctgctgtttaagtaacttggtgactgatgggtttataatggatgatctccgttatgaggaagatggagaaatttttgatgtcatggatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Maf1

Protein Analysis

173

Amino Acids

20.13

Weight (kDa)

4.28

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13240 AT5G13240 AT5G13240
fragaria_vesca	FvH4_4g26160
malus_domestica	MD13G1028600.v1.1 MD16G1031300.v1.1
prunus_persica	Prupe.1G321700_v2.0.a1 Prupe.1G321700_v2.0.a1
pyrus_communis	pycom13g02690 pycom16g02730
rosa_chinensis	RchiOBHm_Chr4g0433731
rosa_multiflora	Rmu_sc0002912.1_g000001 Rmu_sc0006151.1_g000004
rosa_roxburghii	Rroxscaffold_5G00375170
rosa_rugosa	Rorug04G0271300
rosa_samantha	Rh4AG325600 Rh4BG333400 Rh4CG348600 Rh4DG330000
rosa_wichuraiana	Rw4G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AarI	CACCTGC	1 cut(s)	55
Acc36I	ACCTGC	1 cut(s)	55
AccIII	TCCGGA	2 cut(s)	121, 352
AclWI	GGATC	3 cut(s)	63, 326, 338
AcsI	RAATTY	1 cut(s)	498
AcuI	CTGAAG	1 cut(s)	118
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	359, 484
AgsI	TTSAA	1 cut(s)	379
AjnI	CCWGG	2 cut(s)	93, 173
AluBI	AGCT	1 cut(s)	365
AluI	AGCT	1 cut(s)	365
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	3 cut(s)	63, 326, 338
Aor13HI	TCCGGA	2 cut(s)	121, 352
ApoI	RAATTY	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	22
AsuHPI	GGTGA	3 cut(s)	36, 143, 460
BbsI	GAAGAC	1 cut(s)	86
BccI	CCATC	3 cut(s)	149, 449, 485
BciT130I	CCWGG	2 cut(s)	95, 175
BciVI	GTATCC	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	55
BfuI	GTATCC	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	95, 175
BmrFI	CCNGG	2 cut(s)	95, 175
BmsI	GCATC	2 cut(s)	227, 253
BpiI	GAAGAC	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	2 cut(s)	121, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 484
Bse1I	ACTGG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	342
BseAI	TCCGGA	2 cut(s)	121, 352
BseBI	CCWGG	2 cut(s)	95, 175
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	289, 475
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	2 cut(s)	359, 484
BseMII	CTCAG	2 cut(s)	42, 53
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	375
BsiSI	CCGG	3 cut(s)	76, 122, 353
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	2 cut(s)	359, 484
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	191
Bsp13I	TCCGGA	2 cut(s)	121, 352
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	4 cut(s)	68, 331, 343, 472
BspCNI	CTCAG	2 cut(s)	43, 54
BspEI	TCCGGA	2 cut(s)	121, 352
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	3 cut(s)	63, 326, 338
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	4 cut(s)	68, 331, 343, 472
Bst2UI	CCWGG	2 cut(s)	95, 175
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	43
BstAUI	TGTACA	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	51, 62
BstF5I	GGATG	2 cut(s)	289, 475
BstKTI	GATC	4 cut(s)	71, 334, 346, 475
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	4 cut(s)	68, 331, 343, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 146
BstNI	CCWGG	2 cut(s)	95, 175
BstSCI	CCNGG	2 cut(s)	93, 173
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	289, 475
BtsIMutI	CAGTG	1 cut(s)	142
BveI	ACCTGC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	511
CviJI	RGCY	3 cut(s)	75, 278, 365
CviKI_1	RGCY	3 cut(s)	75, 278, 365
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	51, 62
DpnI	GATC	4 cut(s)	70, 333, 345, 474
DpnII	GATC	4 cut(s)	68, 331, 343, 472
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	93, 173
FaeI	CATG	1 cut(s)	514
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	510
FokI	GGATG	2 cut(s)	296, 482
HapII	CCGG	3 cut(s)	76, 122, 353
Hin1II	CATG	1 cut(s)	514
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	3 cut(s)	76, 122, 353
HphI	GGTGA	3 cut(s)	36, 143, 460
Hpy188I	TCNGA	2 cut(s)	28, 63
Hpy188III	TCNNGA	6 cut(s)	5, 100, 122, 329, 335, 353
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 146
HpyF3I	CTNAG	2 cut(s)	51, 62
Hsp92II	CATG	1 cut(s)	514
Kpn2I	TCCGGA	2 cut(s)	121, 352
Kzo9I	GATC	4 cut(s)	68, 331, 343, 472
LmnI	GCTCC	1 cut(s)	362
LweI	GCATC	2 cut(s)	227, 253
MabI	ACCWGGT	1 cut(s)	93
MaeIII	GTNAC	3 cut(s)	320, 440, 448
MalI	GATC	4 cut(s)	70, 333, 345, 474
MboI	GATC	4 cut(s)	68, 331, 343, 472
MboII	GAAGA	5 cut(s)	15, 30, 91, 151, 500
MflI	RGATCY	1 cut(s)	68
MluCI	AATT	2 cut(s)	379, 498
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	7 cut(s)	52, 116, 160, 238, 280, 353, 478
MroI	TCCGGA	2 cut(s)	121, 352
MroXI	GAANNNNTTC	1 cut(s)	22
MseI	TTAA	2 cut(s)	186, 437
MslI	CAYNNNNRTG	1 cut(s)	515
MspI	CCGG	3 cut(s)	76, 122, 353
MspR9I	CCNGG	2 cut(s)	95, 175
MvaI	CCWGG	2 cut(s)	95, 175
MwoI	GCNNNNNNNGC	2 cut(s)	72, 146
NdeII	GATC	4 cut(s)	68, 331, 343, 472
NlaIII	CATG	1 cut(s)	514
NmuCI	GTSAC	1 cut(s)	448
PaqCI	CACCTGC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PsiI	TTATAA	1 cut(s)	464
Psp6I	CCWGG	2 cut(s)	93, 173
PspGI	CCWGG	2 cut(s)	93, 173
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	186, 437
Sau3AI	GATC	4 cut(s)	68, 331, 343, 472
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	95, 175
SetI	ASST	6 cut(s)	49, 96, 176, 206, 291, 367
SexAI	ACCWGGT	1 cut(s)	93
SfaNI	GCATC	2 cut(s)	227, 253
SmiMI	CAYNNNNRTG	1 cut(s)	515
Sse9I	AATT	2 cut(s)	379, 498
StyD4I	CCNGG	2 cut(s)	93, 173
TaaI	ACNGT	1 cut(s)	182
TasI	AATT	2 cut(s)	379, 498
TatI	WGTACW	1 cut(s)	270
Tru1I	TTAA	2 cut(s)	186, 437
Tru9I	TTAA	2 cut(s)	186, 437
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	448
TspGWI	ACGGA	3 cut(s)	336, 413, 467
TspRI	CASTG	1 cut(s)	142
XapI	RAATTY	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.