Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006151.1

Orthogroup ID

OG0010817

Physical Location & Seq

Genomic Coordinates Reverse (-)

22305 .. 24015

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006151.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgttgaactttcagattcttgactatatcggaaaatcttctgacacagactcttcctcacctgctgagttccttctgagcagatccagccggaagacattgatttacctggtcttgaccctctatcacttgtatccggactatgacttcagtgccatcaatgctcaccagttcttcacagaggaaacctgggacagttttaagctgatttttgatacctatatggtggaagcatcaaaggaatggacagaaacaaatgagggtagttccttgcttgataccttgtacaaggctttggatgaggttgttggattagcagattgcgaagtttatggttacaatcctgatcctgatgttgatccgtttccggaaagaggagctgtatggtcattcaatttctttttctacaatagaaaactgaaaagggttgtgagtttccgtatctgctgtttaagtaacttggtgactgatgggtttataatggatgatctccgttatgaggaagatggagaaatttttgatgtcatggatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Maf1

Protein Analysis

178

Amino Acids

20.76

Weight (kDa)

4.22

Isoelectric Point (pI)

31.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13240 AT5G13240 AT5G13240
fragaria_vesca	FvH4_4g26160
malus_domestica	MD13G1028600.v1.1 MD16G1031300.v1.1
prunus_persica	Prupe.1G321700_v2.0.a1 Prupe.1G321700_v2.0.a1
pyrus_communis	pycom13g02690 pycom16g02730
rosa_chinensis	RchiOBHm_Chr4g0433731
rosa_multiflora	Rmu_sc0002912.1_g000001 Rmu_sc0006151.1_g000004
rosa_roxburghii	Rroxscaffold_5G00375170
rosa_rugosa	Rorug04G0271300
rosa_samantha	Rh4AG325600 Rh4BG333400 Rh4CG348600 Rh4DG330000
rosa_wichuraiana	Rw4G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	70
AccIII	TCCGGA	2 cut(s)	136, 367
AclWI	GGATC	3 cut(s)	78, 341, 353
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	1 cut(s)	133
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	374, 499
AgsI	TTSAA	2 cut(s)	7, 394
AjnI	CCWGG	2 cut(s)	108, 188
AluBI	AGCT	2 cut(s)	205, 380
AluI	AGCT	2 cut(s)	205, 380
AlwI	GGATC	3 cut(s)	78, 341, 353
Aor13HI	TCCGGA	2 cut(s)	136, 367
ApoI	RAATTY	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	37
AsuHPI	GGTGA	3 cut(s)	51, 158, 475
BbsI	GAAGAC	1 cut(s)	101
BccI	CCATC	3 cut(s)	164, 464, 500
BciT130I	CCWGG	2 cut(s)	110, 190
BciVI	GTATCC	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	144
Bme1390I	CCNGG	2 cut(s)	110, 190
BmrFI	CCNGG	2 cut(s)	110, 190
BmsI	GCATC	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	2 cut(s)	136, 367
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 499
Bse1I	ACTGG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	357
BseAI	TCCGGA	2 cut(s)	136, 367
BseBI	CCWGG	2 cut(s)	110, 190
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	304, 490
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	2 cut(s)	374, 499
BseMII	CTCAG	2 cut(s)	57, 68
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	390
BsiSI	CCGG	3 cut(s)	91, 137, 368
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	374, 499
BsmFI	GGGAC	1 cut(s)	206
Bsp13I	TCCGGA	2 cut(s)	136, 367
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	4 cut(s)	83, 346, 358, 487
BspCNI	CTCAG	2 cut(s)	58, 69
BspEI	TCCGGA	2 cut(s)	136, 367
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	3 cut(s)	78, 341, 353
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	4 cut(s)	83, 346, 358, 487
Bst2UI	CCWGG	2 cut(s)	110, 190
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	58
BstAUI	TGTACA	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	66, 77
BstF5I	GGATG	2 cut(s)	304, 490
BstKTI	GATC	4 cut(s)	86, 349, 361, 490
BstMBI	GATC	4 cut(s)	83, 346, 358, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 161
BstNI	CCWGG	2 cut(s)	110, 190
BstSCI	CCNGG	2 cut(s)	108, 188
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BsuI	GTATCC	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	304, 490
BtsIMutI	CAGTG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	70
CsiI	ACCWGGT	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	1 cut(s)	526
CviJI	RGCY	4 cut(s)	90, 205, 293, 380
CviKI_1	RGCY	4 cut(s)	90, 205, 293, 380
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	66, 77
DpnI	GATC	4 cut(s)	85, 348, 360, 489
DpnII	GATC	4 cut(s)	83, 346, 358, 487
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	108, 188
FaeI	CATG	1 cut(s)	529
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	1 cut(s)	525
FokI	GGATG	2 cut(s)	311, 497
HapII	CCGG	3 cut(s)	91, 137, 368
Hin1II	CATG	1 cut(s)	529
HinfI	GANTC	2 cut(s)	16, 50
HpaII	CCGG	3 cut(s)	91, 137, 368
HphI	GGTGA	3 cut(s)	51, 158, 475
Hpy188I	TCNGA	4 cut(s)	15, 32, 43, 78
Hpy188III	TCNNGA	6 cut(s)	20, 115, 137, 344, 350, 368
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 161
HpyF3I	CTNAG	2 cut(s)	66, 77
Hsp92II	CATG	1 cut(s)	529
Kpn2I	TCCGGA	2 cut(s)	136, 367
Kzo9I	GATC	4 cut(s)	83, 346, 358, 487
LmnI	GCTCC	1 cut(s)	377
LweI	GCATC	1 cut(s)	242
MabI	ACCWGGT	1 cut(s)	108
MaeIII	GTNAC	3 cut(s)	335, 455, 463
MalI	GATC	4 cut(s)	85, 348, 360, 489
MboI	GATC	4 cut(s)	83, 346, 358, 487
MboII	GAAGA	5 cut(s)	30, 45, 106, 166, 515
MflI	RGATCY	1 cut(s)	83
MluCI	AATT	2 cut(s)	394, 513
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	7 cut(s)	67, 131, 175, 253, 295, 368, 493
MroI	TCCGGA	2 cut(s)	136, 367
MroXI	GAANNNNTTC	1 cut(s)	37
MseI	TTAA	2 cut(s)	201, 452
MslI	CAYNNNNRTG	1 cut(s)	530
MspI	CCGG	3 cut(s)	91, 137, 368
MspR9I	CCNGG	2 cut(s)	110, 190
MvaI	CCWGG	2 cut(s)	110, 190
MwoI	GCNNNNNNNGC	2 cut(s)	87, 161
NdeII	GATC	4 cut(s)	83, 346, 358, 487
NlaIII	CATG	1 cut(s)	529
NmuCI	GTSAC	1 cut(s)	463
PaqCI	CACCTGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	479
Psp6I	CCWGG	2 cut(s)	108, 188
PspGI	CCWGG	2 cut(s)	108, 188
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	530
SaqAI	TTAA	2 cut(s)	201, 452
Sau3AI	GATC	4 cut(s)	83, 346, 358, 487
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	110, 190
SetI	ASST	8 cut(s)	64, 111, 191, 207, 221, 284, 306, 382
SexAI	ACCWGGT	1 cut(s)	108
SfaNI	GCATC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	530
Sse9I	AATT	2 cut(s)	394, 513
StyD4I	CCNGG	2 cut(s)	108, 188
TaaI	ACNGT	1 cut(s)	197
TasI	AATT	2 cut(s)	394, 513
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	201, 452
Tru9I	TTAA	2 cut(s)	201, 452
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	463
Tsp45I	GTSAC	1 cut(s)	463
TspGWI	ACGGA	3 cut(s)	351, 428, 482
TspRI	CASTG	1 cut(s)	157
XapI	RAATTY	1 cut(s)	513
XmnI	GAANNNNTTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.