Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010817

Physical Location & Seq

Genomic Coordinates Forward (+)

1761126 .. 1763343

Gene Structure 2218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g02730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAAGTTCTTGGAATACACCCCGTTGGAGCGGTTAAATGATTTCTTTAGTGATTTGAATCTCGGAGAGCGAACAATTAAGGGTTGTCTTGAAGCTTACTCTTGCAAACACACCGGATCGGATAAGAAATTGTCTCTCAGTTTGGAGAATGAGATTCTTGATTATCTTGGGAAATCTTCGGACTCTGATTCTTCCTCGCCTGCTGAATTTCTGCTGACCAGATCCAGCCGGAAGACATTGATTTACCTTGTTTTGACACTCTATCACTTGTATCCGGACTATGACTTCAGTGCAGTAAATGCTCATCAGTTCTTCACAGAGGAAAGCTGGGACAGTTTTAAGCAGATTTTTGATACCTCTATGTTTGAAGCATCAAAGGAATGGACAGTGACAAATGAGGGCAGTTCCTTGCTGGAAGCCTTGTACAAGGCTTTGGATGAGGTTGTTAGACTAGCGGAATGTGAAGTTTACAGTTACAGTCCAGACTCGGATGCTGATCCGTTTCTTGAGAGAGGATCCATATGGTCGTTCAATTTCTTTTTCTACAATAGGAAACTTAAGCGTGTTGTGAGCTTCCGTGTCTGCTGTTTAAGTAACCTGGTGGCTGATGGATTTCTGATGGACGAGTTGCGCTACGATGAAGATGGAGAAATTTTCGACAACATGGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Maf1

Protein Analysis

225

Amino Acids

25.98

Weight (kDa)

4.48

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13240 AT5G13240 AT5G13240
fragaria_vesca	FvH4_4g26160
malus_domestica	MD13G1028600.v1.1 MD16G1031300.v1.1
prunus_persica	Prupe.1G321700_v2.0.a1 Prupe.1G321700_v2.0.a1
pyrus_communis	pycom13g02690 pycom16g02730
rosa_chinensis	RchiOBHm_Chr4g0433731
rosa_multiflora	Rmu_sc0002912.1_g000001 Rmu_sc0006151.1_g000004
rosa_roxburghii	Rroxscaffold_5G00375170
rosa_rugosa	Rorug04G0271300
rosa_samantha	Rh4AG325600 Rh4BG333400 Rh4CG348600 Rh4DG330000
rosa_wichuraiana	Rw4G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	31
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	2 cut(s)	31, 455
AclWI	GGATC	5 cut(s)	124, 216, 491, 510, 523
AcsI	RAATTY	2 cut(s)	206, 651
AcuI	CTGAAG	1 cut(s)	271
AfaI	GTAC	1 cut(s)	425
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	4 cut(s)	58, 92, 368, 532
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	3 cut(s)	95, 327, 573
AluI	AGCT	3 cut(s)	95, 327, 573
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	5 cut(s)	124, 216, 491, 510, 523
Aor13HI	TCCGGA	1 cut(s)	274
ApoI	RAATTY	2 cut(s)	206, 651
AspLEI	GCGC	1 cut(s)	633
BamHI	GGATCC	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	239
BccI	CCATC	3 cut(s)	602, 613, 638
BciT130I	CCWGG	1 cut(s)	599
BciVI	GTATCC	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	452
BfrI	CTTAAG	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	282
Bme1390I	CCNGG	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	2 cut(s)	380, 481
BpiI	GAAGAC	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	527
BsaBI	GATNNNNATC	2 cut(s)	57, 495
BsaWI	WCCGGW	2 cut(s)	113, 274
Bse8I	GATNNNNATC	2 cut(s)	57, 495
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	599
BseGI	GGATG	2 cut(s)	442, 496
BseJI	GATNNNNATC	2 cut(s)	57, 495
BseMII	CTCAG	1 cut(s)	151
BseYI	CCCAGC	1 cut(s)	327
BsgI	GTGCAG	1 cut(s)	312
BsiSI	CCGG	3 cut(s)	114, 229, 275
BslFI	GGGAC	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	344
Bsp13I	TCCGGA	1 cut(s)	274
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	4 cut(s)	116, 221, 496, 515
BspACI	CCGC	2 cut(s)	31, 455
BspCNI	CTCAG	1 cut(s)	150
BspEI	TCCGGA	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	517
BspPI	GGATC	5 cut(s)	124, 216, 491, 510, 523
BspTI	CTTAAG	1 cut(s)	557
BsrBI	CCGCTC	1 cut(s)	31
BsrGI	TGTACA	1 cut(s)	423
BssMI	GATC	4 cut(s)	116, 221, 496, 515
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	4 cut(s)	335, 388, 473, 479
BstAFI	CTTAAG	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	442, 496
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	4 cut(s)	119, 224, 499, 518
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	4 cut(s)	116, 221, 496, 515
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	599
BstSCI	CCNGG	1 cut(s)	597
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	2 cut(s)	221, 515
BstYI	RGATCY	2 cut(s)	221, 515
BsuI	GTATCC	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	442, 496
BtsIMutI	CAGTG	2 cut(s)	295, 393
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	633
CsiI	ACCWGGT	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	1 cut(s)	664
CviJI	RGCY	7 cut(s)	95, 228, 327, 419, 431, 573, 605
CviKI_1	RGCY	7 cut(s)	95, 228, 327, 419, 431, 573, 605
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	4 cut(s)	118, 223, 498, 517
DpnII	GATC	4 cut(s)	116, 221, 496, 515
Eco57I	CTGAAG	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	597
FaeI	CATG	1 cut(s)	667
FaiI	YATR	5 cut(s)	282, 362, 521, 523, 665
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	1 cut(s)	663
FauNDI	CATATG	1 cut(s)	521
FokI	GGATG	2 cut(s)	449, 503
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	632
GsaI	CCCAGC	1 cut(s)	331
HapII	CCGG	3 cut(s)	114, 229, 275
HhaI	GCGC	1 cut(s)	633
Hin1II	CATG	1 cut(s)	667
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	5 cut(s)	58, 154, 182, 188, 485
HpaII	CCGG	3 cut(s)	114, 229, 275
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	6 cut(s)	65, 121, 181, 187, 490, 618
Hpy188III	TCNNGA	5 cut(s)	89, 158, 275, 482, 506
Hpy8I	GTNNAC	1 cut(s)	469
HpyCH4III	ACNGT	4 cut(s)	335, 388, 473, 479
HpyCH4V	TGCA	2 cut(s)	105, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	667
HspAI	GCGC	1 cut(s)	631
Kpn2I	TCCGGA	1 cut(s)	274
Kzo9I	GATC	4 cut(s)	116, 221, 496, 515
LmnI	GCTCC	1 cut(s)	28
LweI	GCATC	2 cut(s)	380, 481
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	1 cut(s)	452
MaeIII	GTNAC	3 cut(s)	388, 473, 593
MalI	GATC	4 cut(s)	118, 223, 498, 517
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	4 cut(s)	116, 221, 496, 515
MboII	GAAGA	5 cut(s)	168, 183, 244, 304, 653
MflI	RGATCY	2 cut(s)	221, 515
MluCI	AATT	5 cut(s)	75, 128, 206, 532, 651
MlyI	GAGTC	2 cut(s)	176, 479
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	6 cut(s)	205, 313, 367, 391, 433, 506
MroI	TCCGGA	1 cut(s)	274
MseI	TTAA	5 cut(s)	35, 78, 339, 558, 590
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	3 cut(s)	114, 229, 275
MspR9I	CCNGG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeI	CATATG	1 cut(s)	521
NdeII	GATC	4 cut(s)	116, 221, 496, 515
NlaIII	CATG	1 cut(s)	667
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	388
PfeI	GAWTC	3 cut(s)	58, 154, 188
PleI	GAGTC	2 cut(s)	176, 479
PpsI	GAGTC	2 cut(s)	176, 479
Psp6I	CCWGG	1 cut(s)	597
PspFI	CCCAGC	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	1 cut(s)	517
PsuI	RGATCY	2 cut(s)	221, 515
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SaqAI	TTAA	5 cut(s)	35, 78, 339, 558, 590
Sau3AI	GATC	4 cut(s)	116, 221, 496, 515
SchI	GAGTC	2 cut(s)	176, 479
ScrFI	CCNGG	1 cut(s)	599
SetI	ASST	7 cut(s)	97, 249, 329, 359, 444, 575, 600
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	2 cut(s)	380, 481
SmlI	CTYRAG	2 cut(s)	506, 557
SmoI	CTYRAG	2 cut(s)	506, 557
Sse9I	AATT	5 cut(s)	75, 128, 206, 532, 651
SsiI	CCGC	2 cut(s)	31, 455
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	597
TaaI	ACNGT	4 cut(s)	335, 388, 473, 479
TaqI	TCGA	1 cut(s)	657
TasI	AATT	5 cut(s)	75, 128, 206, 532, 651
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	3 cut(s)	58, 154, 188
Tru1I	TTAA	5 cut(s)	35, 78, 339, 558, 590
Tru9I	TTAA	5 cut(s)	35, 78, 339, 558, 590
TscAI	CASTG	2 cut(s)	295, 393
TseFI	GTSAC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	17, 654
TspGWI	ACGGA	2 cut(s)	489, 566
TspRI	CASTG	2 cut(s)	295, 393
Vha464I	CTTAAG	1 cut(s)	557
XapI	RAATTY	2 cut(s)	206, 651
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.