Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009853

Physical Location & Seq

Genomic Coordinates Reverse (-)

4277546 .. 4279493

Gene Structure 1948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCTCGAAACGACTCGCGATCTAGGTCGCCGTCTCACCGCCGACGGTACTCTCGCTCGCCTGTGACTCATCGTAGCAGCCGTCGTACCAGGCGCGACCGCAGCCGCTCACCCTACACATCAAGGCATAAGAAGAGCAGATCTCCTGCACCAAGGCAACACCAAAGGGATAGAAGTAGTTCATTGTCTCCTTCCGAGCATAGAATTGCGATTGAAGTGAAGAAAGAACAGGAAGACAAGGCAAGATTGCAGCATGAGGCGGAGCTCAAGCGACTAGAAGAAGAGACTGCACAGCGGATTGAGGAAGCAGTAAGGAAAAATGTAGAGGAAAGGATGAAAACCGAAGAAGTTAAAGAAGAAATTGAAAGACGGACAAAGGAAGCTTATGAGAAGATGTTTCTTGACGTGGAAATACAGCTGAAGAAAGAAAAAGAAGCTGCTCTAAACGAGGCAAGAAGAAAAGAAGAACAAGCTAGGAGAGAAAGAGAAGAGCTGGATAAGATGTTAGAAGAAAATAGTAGGAGGGTTGAAGAATCTCAAAGGCGAGAAGCAATGGAACTTCAACGTAAAGAAGAGGAAAGGTATCGAGAATTGGAGCTCCTGCAGAGACAGAAGGAGGAGGCTGCAAGGAGAAAGAAGCTGGAAGAAGAAGAAGAGATTAGAAACTCCAGCAAGCTATCAAATGGAAACAGATCACGATCCAAGCTGCATTTCGGCATGGGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARGLU

Protein Analysis

242

Amino Acids

29.43

Weight (kDa)

9.97

Isoelectric Point (pI)

118.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARGLU	PF15346	85 - 240	3.4e-38	Arginine and glutamate-rich 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13340
fragaria_vesca	FvH4_1g25270 FvH4_1g25270 FvH4_1g25270
malus_domestica	MD15G1137800.v1.1
prunus_persica	Prupe.4G280500_v2.0.a1 Prupe.4G280500_v2.0.a1
pyrus_communis	pycom15g12410
rosa_chinensis	RchiOBHm_Chr2g0123211
rosa_laevigata	RLG00000018737
rosa_multiflora	Rmu_sc0005573.1_g000013 Rmu_sc0005810.1_g000005
rosa_roxburghii	Rroxscaffold_2G00120840
rosa_rugosa	Rorug02G0244200 Rorug02G0244200
rosa_samantha	Rh2AG303300 Rh2BG311200 Rh2CG289900 Rh2DG327300
rosa_wichuraiana	Rw2G024160 Rw2G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	727
AccBSI	CCGCTC	1 cut(s)	108
AccII	CGCG	2 cut(s)	19, 96
AciI	CCGC	5 cut(s)	40, 100, 106, 260, 295
AclWI	GGATC	1 cut(s)	693
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	2 cut(s)	50, 88
AgsI	TTSAA	4 cut(s)	215, 365, 530, 563
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	89
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
Alw21I	GWGCWC	2 cut(s)	267, 600
Alw26I	GTCTC	4 cut(s)	39, 192, 278, 601
AlwI	GGATC	1 cut(s)	693
ApeKI	GCWGC	6 cut(s)	78, 102, 250, 437, 623, 706
Asp700I	GAANNNNTTC	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	96
AsuHPI	GGTGA	2 cut(s)	29, 102
BanII	GRGCYC	2 cut(s)	267, 600
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	267, 600
BbvI	GCAGC	6 cut(s)	90, 114, 262, 424, 610, 693
BceAI	ACGGC	2 cut(s)	16, 66
BciT130I	CCWGG	1 cut(s)	91
BcoDI	GTCTC	4 cut(s)	39, 192, 278, 601
BfaI	CTAG	3 cut(s)	24, 275, 474
BfmI	CTRYAG	1 cut(s)	602
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	7 cut(s)	79, 103, 106, 251, 438, 624, 707
BlsI	GCNGC	7 cut(s)	80, 104, 107, 252, 439, 625, 708
Bme1390I	CCNGG	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	406
BmrFI	CCNGG	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	240
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
BpmI	CTGGAG	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	697
BsaJI	CCNNGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	697
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	339
BseJI	GATNNNNATC	1 cut(s)	697
BseMI	GCAATG	1 cut(s)	558
BseRI	GAGGAG	1 cut(s)	632
BseXI	GCAGC	6 cut(s)	90, 114, 262, 424, 610, 693
BsgI	GTGCAG	2 cut(s)	132, 273
Bsh1236I	CGCG	2 cut(s)	19, 96
Bsh1285I	CGRYCG	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	100
BsiHKAI	GWGCWC	2 cut(s)	267, 600
BsmAI	GTCTC	4 cut(s)	39, 192, 278, 601
BsmBI	CGTCTC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	267, 600
Bsp143I	GATC	4 cut(s)	20, 140, 692, 698
Bsp68I	TCGCGA	1 cut(s)	19
BspACI	CCGC	5 cut(s)	40, 100, 106, 260, 295
BspFNI	CGCG	2 cut(s)	19, 96
BspMAI	CTGCAG	1 cut(s)	606
BspPI	GGATC	1 cut(s)	693
BspQI	GCTCTTC	2 cut(s)	128, 483
BsrBI	CCGCTC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	558
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	4 cut(s)	20, 140, 692, 698
BssT1I	CCWWGG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	5 cut(s)	128, 276, 483, 567, 648
BstC8I	GCNNGC	2 cut(s)	59, 674
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	2 cut(s)	19, 96
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	4 cut(s)	23, 143, 695, 701
BstMAI	GTCTC	4 cut(s)	39, 192, 278, 601
BstMBI	GATC	4 cut(s)	20, 140, 692, 698
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	602
BstUI	CGCG	2 cut(s)	19, 96
BstV1I	GCAGC	6 cut(s)	90, 114, 262, 424, 610, 693
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	339
BtuMI	TCGCGA	1 cut(s)	19
Cac8I	GCNNGC	2 cut(s)	59, 674
CfoI	GCGC	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	49, 87
CviAII	CATG	2 cut(s)	254, 718
CviQI	GTAC	2 cut(s)	49, 87
DpnI	GATC	4 cut(s)	22, 142, 694, 700
DpnII	GATC	4 cut(s)	20, 140, 692, 698
Eam1104I	CTCTTC	5 cut(s)	128, 276, 483, 567, 648
EarI	CTCTTC	5 cut(s)	128, 276, 483, 567, 648
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	2 cut(s)	265, 598
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	2 cut(s)	267, 600
Eco53kI	GAGCTC	2 cut(s)	265, 598
Eco57I	CTGAAG	1 cut(s)	440
EcoICRI	GAGCTC	2 cut(s)	265, 598
EcoRII	CCWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	152
EcoT38I	GRGCYC	2 cut(s)	267, 600
ErhI	CCWWGG	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	2 cut(s)	257, 721
FaiI	YATR	6 cut(s)	129, 201, 255, 387, 719, 727
FatI	CATG	2 cut(s)	253, 717
Fnu4HI	GCNGC	7 cut(s)	79, 103, 106, 251, 438, 624, 707
FokI	GGATG	1 cut(s)	346
FriOI	GRGCYC	2 cut(s)	267, 600
Fsp4HI	GCNGC	7 cut(s)	79, 103, 106, 251, 438, 624, 707
FspBI	CTAG	3 cut(s)	24, 275, 474
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	7 cut(s)	79, 103, 106, 251, 438, 624, 707
GsuI	CTGGAG	1 cut(s)	652
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	257, 721
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	3 cut(s)	14, 67, 533
HphI	GGTGA	2 cut(s)	29, 102
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	4 cut(s)	18, 401, 587, 696
Hpy99I	CGWCG	2 cut(s)	48, 87
HpyAV	CCTTC	2 cut(s)	201, 607
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	2 cut(s)	405, 565
HpyCH4V	TGCA	6 cut(s)	149, 250, 290, 604, 626, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpySE526I	ACGT	2 cut(s)	405, 565
Hsp92II	CATG	2 cut(s)	257, 721
HspAI	GCGC	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	20, 140, 692, 698
LguI	GCTCTTC	2 cut(s)	128, 483
LmnI	GCTCC	3 cut(s)	262, 595, 603
LpnPI	CCDG	9 cut(s)	75, 76, 103, 159, 215, 479, 614, 626, 682
Lsp1109I	GCAGC	6 cut(s)	90, 114, 262, 424, 610, 693
MaeI	CTAG	3 cut(s)	24, 275, 474
MaeII	ACGT	2 cut(s)	405, 565
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	4 cut(s)	22, 142, 694, 700
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	4 cut(s)	20, 140, 692, 698
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	267, 600
MluCI	AATT	3 cut(s)	204, 360, 590
MlyI	GAGTC	2 cut(s)	8, 61
MnlI	CCTC	8 cut(s)	250, 295, 319, 442, 516, 568, 610, 613
MroXI	GAANNNNTTC	1 cut(s)	178
MseI	TTAA	1 cut(s)	351
MspA1I	CMGCKG	2 cut(s)	295, 418
MspR9I	CCNGG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	2 cut(s)	19, 96
MwoI	GCNNNNNNNGC	1 cut(s)	102
NdeII	GATC	4 cut(s)	20, 140, 692, 698
NlaIII	CATG	2 cut(s)	257, 721
NmuCI	GTSAC	1 cut(s)	64
NruI	TCGCGA	1 cut(s)	19
PciSI	GCTCTTC	2 cut(s)	128, 483
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	7 cut(s)	80, 104, 107, 252, 439, 625, 708
PleI	GAGTC	2 cut(s)	8, 61
PpsI	GAGTC	2 cut(s)	8, 61
PsiI	TTATAA	1 cut(s)	727
Psp124BI	GAGCTC	2 cut(s)	267, 600
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	606
PsuI	RGATCY	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	418
RruI	TCGCGA	1 cut(s)	19
RsaI	GTAC	2 cut(s)	50, 88
RsaNI	GTAC	2 cut(s)	49, 87
SacI	GAGCTC	2 cut(s)	267, 600
SapI	GCTCTTC	2 cut(s)	128, 483
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	7 cut(s)	79, 103, 106, 251, 438, 624, 707
Sau3AI	GATC	4 cut(s)	20, 140, 692, 698
SchI	GAGTC	2 cut(s)	8, 61
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	2 cut(s)	267, 600
SfcI	CTRYAG	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	3 cut(s)	204, 360, 590
SsiI	CCGC	5 cut(s)	40, 100, 106, 260, 295
SspMI	CTAG	3 cut(s)	24, 275, 474
SstI	GAGCTC	2 cut(s)	267, 600
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	2 cut(s)	408, 568
TaqI	TCGA	2 cut(s)	7, 586
TasI	AATT	3 cut(s)	204, 360, 590
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	6 cut(s)	78, 102, 250, 437, 623, 706
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	171, 350
TspGWI	ACGGA	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	178
XspI	CTAG	3 cut(s)	24, 275, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.