Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009853

Physical Location & Seq

Genomic Coordinates Reverse (-)

23678829 .. 23682027

Gene Structure 3199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G280500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGACGGAGCATATCAAGGTCGCCATCCTACAGCAGAGGGAGAAGCCGCAGAGATCGAAGCCGTTCACCCTACTCCAGAAGAAATCGTTCTAGTGGCTCCCCACGTCGCCGGAGAAGTCGTTCGCCAAGTTACAGGCGGCGCAAGAGTCGTTCGCCGACACCCAGACGACATAGACGACACAGAAGCAGGAGTAGGAGTAGAAGTAGCTCTTTGTCTCCTCCTCCTTTACCCAAGTCTCCAGGGCCCCGTCTAACCTCAACTGAACGCAAAAATGGTGCTGATAAACTCAAGAAAGAGGAGGAAGAAAAAATCAGGCGTCAACAGGAGGCAGAACTCAAACAGTTAGAAGAAGAGACTGCAATGAGACTTGAGGAAGCGATTCGGAAGAATGTGGAGGAGAGGTTGTCTTCTAATGAAGTTAAGTTAGAAATCGAGAGGCGTATAAAAGAAGGTCAGAAGAAATTGTTTGATGATGTTAAAGCTCAACTTGAAAAAGAAAAGGAAGCTGCTCTTGTTGAAGCAAGACAGAAAGAAGAACAAGCTCGGAAAGAGAGAGAAGAGCTTGATAAGATGCTGGAGGAGAATCGGAGGAGGGTGGAAGAGGCTCAGAGAAGAGAAGCTTTGGAACAGCAGAGCAAAGAAGAGGAACGGTATCGAGAGTTGGAGCTGATTCAGAGACAGAAAGAAGAGGCTGCAAGGAGAAAAAAGCAGGAAGAGGAAGAAGAACATGCAAAACTGATGAAGTTGTCAAGTAAGAACAAATCTCGGCCAAAGTCTTTTGGTATTGGTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARGLU

Protein Analysis

266

Amino Acids

31.73

Weight (kDa)

10.63

Isoelectric Point (pI)

122.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13340
fragaria_vesca	FvH4_1g25270 FvH4_1g25270 FvH4_1g25270
malus_domestica	MD15G1137800.v1.1
prunus_persica	Prupe.4G280500_v2.0.a1 Prupe.4G280500_v2.0.a1
pyrus_communis	pycom15g12410
rosa_chinensis	RchiOBHm_Chr2g0123211
rosa_laevigata	RLG00000018737
rosa_multiflora	Rmu_sc0005573.1_g000013 Rmu_sc0005810.1_g000005
rosa_roxburghii	Rroxscaffold_2G00120840
rosa_rugosa	Rorug02G0244200 Rorug02G0244200
rosa_samantha	Rh2AG303300 Rh2BG311200 Rh2CG289900 Rh2DG327300
rosa_wichuraiana	Rw2G024160 Rw2G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	796
AciI	CCGC	2 cut(s)	49, 139
AcoI	YGGCCR	1 cut(s)	770
AcyI	GRCGYC	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	494, 521
AjiI	CACGTC	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	241
AloI	GAACNNNNNNTCC	2 cut(s)	106, 138
AluBI	AGCT	7 cut(s)	210, 485, 509, 545, 565, 623, 670
AluI	AGCT	7 cut(s)	210, 485, 509, 545, 565, 623, 670
Alw26I	GTCTC	5 cut(s)	222, 243, 350, 361, 673
AoxI	GGCC	2 cut(s)	245, 770
ApaI	GGGCCC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	509, 695
Asp700I	GAANNNNTTC	4 cut(s)	64, 88, 121, 381
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	2 cut(s)	245, 246
AsuHPI	GGTGA	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	496, 682
BccI	CCATC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	243
BcoDI	GTCTC	5 cut(s)	222, 243, 350, 361, 673
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	31
BisI	GCNGC	4 cut(s)	49, 140, 510, 696
BlsI	GCNGC	4 cut(s)	50, 141, 511, 697
Bme1390I	CCNGG	1 cut(s)	243
BmgBI	CACGTC	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	245, 246
BmiI	GGNNCC	3 cut(s)	100, 247, 248
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	564
BpiI	GAAGAC	1 cut(s)	402
BpmI	CTGGAG	3 cut(s)	61, 225, 599
BpuEI	CTTGAG	2 cut(s)	275, 392
BsaHI	GRCGYC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	623
BseRI	GAGGAG	6 cut(s)	210, 213, 314, 413, 596, 607
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	496, 682
BshFI	GGCC	2 cut(s)	247, 772
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	5 cut(s)	222, 243, 350, 361, 673
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	247, 772
Bsp120I	GGGCCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	2 cut(s)	49, 139
BspANI	GGCC	2 cut(s)	247, 772
BspCNI	CTCAG	1 cut(s)	622
BspLI	GGNNCC	3 cut(s)	100, 247, 248
BspQI	GCTCTTC	1 cut(s)	555
BsrDI	GCAATG	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	1 cut(s)	55
BssNI	GRCGYC	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	345, 654
Bst6I	CTCTTC	7 cut(s)	348, 555, 597, 610, 639, 684, 711
BstACI	GRCGYC	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	609
BstF5I	GGATG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	5 cut(s)	222, 243, 350, 361, 673
BstMBI	GATC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	734
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	496, 682
BstV2I	GAAGAC	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	247, 772
BtrI	CACGTC	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	26
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	2 cut(s)	245, 246
CseI	GACGC	1 cut(s)	308
CviAII	CATG	1 cut(s)	731
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	770
Eam1104I	CTCTTC	7 cut(s)	348, 555, 597, 610, 639, 684, 711
EarI	CTCTTC	7 cut(s)	348, 555, 597, 610, 639, 684, 711
Eco24I	GRGCYC	1 cut(s)	249
EcoO109I	RGGNCCY	2 cut(s)	245, 246
EcoRII	CCWGG	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	1 cut(s)	734
FaiI	YATR	5 cut(s)	14, 174, 446, 732, 796
FalI	AAGNNNNNCTT	8 cut(s)	196, 228, 474, 506, 498, 530, 607, 639
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	730
Fnu4HI	GCNGC	4 cut(s)	49, 140, 510, 696
FokI	GGATG	1 cut(s)	13
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	4 cut(s)	49, 140, 510, 696
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	4 cut(s)	49, 140, 510, 696
GsuI	CTGGAG	3 cut(s)	61, 225, 599
HaeIII	GGCC	2 cut(s)	247, 772
HapII	CCGG	1 cut(s)	112
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	1 cut(s)	144
Hin1I	GRCGYC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	734
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	323
HindII	GTYRAC	1 cut(s)	323
HindIII	AAGCTT	1 cut(s)	621
HinfI	GANTC	4 cut(s)	148, 382, 586, 673
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	2 cut(s)	68, 323
Hpy188I	TCNGA	6 cut(s)	387, 459, 549, 591, 612, 678
Hpy188III	TCNNGA	4 cut(s)	78, 292, 436, 659
Hpy8I	GTNNAC	2 cut(s)	68, 323
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	446
HpyCH4III	ACNGT	2 cut(s)	345, 654
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	362, 698, 734
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	1 cut(s)	106
Hsp92I	GRCGYC	1 cut(s)	319
Hsp92II	CATG	1 cut(s)	734
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	55
LguI	GCTCTTC	1 cut(s)	555
LmnI	GCTCC	3 cut(s)	9, 104, 667
Lsp1109I	GCAGC	2 cut(s)	496, 682
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	464
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	645
MroXI	GAANNNNTTC	4 cut(s)	64, 88, 121, 381
MseI	TTAA	2 cut(s)	423, 480
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	734
NlaIV	GGNNCC	3 cut(s)	100, 247, 248
NmeAIII	GCCGAG	1 cut(s)	748
NspI	RCATGY	1 cut(s)	734
PciSI	GCTCTTC	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	175
PdmI	GAANNNNTTC	4 cut(s)	64, 88, 121, 381
PfeI	GAWTC	3 cut(s)	382, 586, 673
PkrI	GCNGC	4 cut(s)	50, 141, 511, 697
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PsiI	TTATAA	1 cut(s)	796
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	3 cut(s)	100, 247, 248
PspOMI	GGGCCC	1 cut(s)	245
PspPI	GGNCC	2 cut(s)	245, 246
SapI	GCTCTTC	1 cut(s)	555
SaqAI	TTAA	2 cut(s)	423, 480
SatI	GCNGC	4 cut(s)	49, 140, 510, 696
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	2 cut(s)	245, 246
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	564
SfcI	CTRYAG	1 cut(s)	31
SmlI	CTYRAG	2 cut(s)	290, 371
SmoI	CTYRAG	2 cut(s)	290, 371
Sse9I	AATT	1 cut(s)	464
SsiI	CCGC	2 cut(s)	49, 139
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	345, 654
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	3 cut(s)	58, 435, 658
TasI	AATT	1 cut(s)	464
TauI	GCSGC	2 cut(s)	51, 142
TfiI	GAWTC	3 cut(s)	382, 586, 673
Tru1I	TTAA	2 cut(s)	423, 480
Tru9I	TTAA	2 cut(s)	423, 480
TseI	GCWGC	2 cut(s)	509, 695
TspDTI	ATGAA	2 cut(s)	432, 758
TspGWI	ACGGA	1 cut(s)	22
XceI	RCATGY	1 cut(s)	734
XmnI	GAANNNNTTC	4 cut(s)	64, 88, 121, 381
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.