Rw2G024160

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0009853
Physical Location & Seq
Reverse (-)
35599360 .. 35600603
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024160.1

Sequence Viewer

Length: 633 bp
ATGGGACGGAGCATATCAAAGTCGCCGGCGAGAGGAAGAAGCCGAAGGGATCGAAGCCGCTCACCCTACTCCTCCAGAAGGAACCGTTCTAGTGTCTCCCCCCGTCGCCGGAGAAGCCGGTCGCCGAGTTACAGGCGCCGTAAGAGCCGGTCTCCAACGCCGAGACGACGTCGCAGGCATAGAACTAAGAGCAGCTCTCCGTCTCCTCCTCCTCCTCCTCCTCGTCTGACCACAACTGAACGGAAAAATGCCAAGAAAGAGGAGGAAGAAAAGGCCAGACTACTACTGGAGGCGGAGCTGAAGAGATTAGAGGAAGAGACTGCGCAGAGAATAGAGGAAGCGATTCGGAAAAATGTAGAGGAGAGGCTGAGTTCTGATGATGTTAAGTTACAAGTAGAGAGGCGGATAGAGGAAGGTAGGAAGAAGCTGCTTGAGGATGTTCAAGCTCAACTTCAAAGAGAAAAGGAAGCTGCTCTTAATGAAGCAAGACAGAAACAAGAACAAGCTCGGAAAGAGAGAGAAGAGCTTGATAAGATGCTAGAGGAGAACAGGGGAGGGTGGAAGAGGCTCAGAGAAGAGAAGCTTTGGAACTGCAGACCAAAGAGGAGGAACGCTATCGGGAGTTGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

210

Amino Acids

25.14

Weight (kDa)

11.33

Isoelectric Point (pI)

130.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 97 - 202 1.3e-22 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 172
Acc16I TGCGCA 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 135
AccBSI CCGCTC 1 cut(s) 60
AciI CCGC 3 cut(s) 58, 293, 403
AclWI GGATC 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 320
AcyI GRCGYC 2 cut(s) 136, 169
AfiI CCNNNNNNNGG 3 cut(s) 32, 78, 108
AgsI TTSAA 2 cut(s) 443, 455
AluBI AGCT 9 cut(s) 195, 298, 427, 446, 470, 506, 526, 583, 630
AluI AGCT 9 cut(s) 195, 298, 427, 446, 470, 506, 526, 583, 630
Alw26I GTCTC 5 cut(s) 100, 156, 157, 207, 311
AlwI GGATC 1 cut(s) 57
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 3 cut(s) 192, 427, 470
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 2 cut(s) 138, 325
AsuHPI GGTGA 1 cut(s) 54
BanI GGYRCC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 204, 414, 457
BceAI ACGGC 1 cut(s) 123
BcoDI GTCTC 5 cut(s) 100, 156, 157, 207, 311
BfaI CTAG 2 cut(s) 90, 539
BfmI CTRYAG 1 cut(s) 592
BfoI RGCGCY 1 cut(s) 139
BisI GCNGC 4 cut(s) 58, 193, 428, 471
BlsI GCNGC 4 cut(s) 59, 194, 429, 472
BmiI GGNNCC 2 cut(s) 83, 137
BmsI GCATC 1 cut(s) 525
BplI GAGNNNNNCTC 4 cut(s) 136, 168, 181, 213
BpmI CTGGAG 2 cut(s) 58, 308
BpuEI CTTGAG 1 cut(s) 452
BsaHI GRCGYC 2 cut(s) 136, 169
BsaI GGTCTC 1 cut(s) 156
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 78, 108
Bse118I RCCGGY 3 cut(s) 25, 117, 147
Bse1I ACTGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 3 cut(s) 32, 78, 108
BseMII CTCAG 2 cut(s) 359, 583
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 3 cut(s) 204, 414, 457
Bsh1285I CGRYCG 1 cut(s) 122
BshFI GGCC 1 cut(s) 275
BshNI GGYRCC 1 cut(s) 135
BsiEI CGRYCG 1 cut(s) 122
BsiSI CCGG 4 cut(s) 26, 109, 118, 148
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 32, 78, 108
BsmAI GTCTC 5 cut(s) 100, 156, 157, 207, 311
BsmBI CGTCTC 2 cut(s) 157, 207
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 3 cut(s) 58, 293, 403
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 2 cut(s) 360, 582
BspLI GGNNCC 2 cut(s) 83, 137
BspMAI CTGCAG 1 cut(s) 596
BspPI GGATC 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 135
BspTNI GGTCTC 1 cut(s) 156
BsrBI CCGCTC 1 cut(s) 60
BsrFI RCCGGY 3 cut(s) 25, 117, 147
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 3 cut(s) 25, 117, 147
BssMI GATC 1 cut(s) 49
BssNI GRCGYC 2 cut(s) 136, 169
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 5 cut(s) 296, 309, 516, 557, 570
BstACI GRCGYC 2 cut(s) 136, 169
BstC8I GCNNGC 2 cut(s) 27, 176
BstDEI CTNAG 3 cut(s) 186, 368, 569
BstENI CCTNNNNNAGG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 442
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 2 cut(s) 138, 325
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 5 cut(s) 100, 156, 157, 207, 311
BstMBI GATC 1 cut(s) 49
BstMCI CGRYCG 1 cut(s) 122
BstMWI GCNNNNNNNGC 2 cut(s) 114, 144
BstSFI CTRYAG 1 cut(s) 592
BstV1I GCAGC 3 cut(s) 204, 414, 457
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 1 cut(s) 442
Cac8I GCNNGC 2 cut(s) 27, 176
CfoI GCGC 2 cut(s) 138, 325
Cfr10I RCCGGY 3 cut(s) 25, 117, 147
DdeI CTNAG 3 cut(s) 186, 368, 569
DinI GGCGCC 1 cut(s) 137
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eam1104I CTCTTC 5 cut(s) 296, 309, 516, 557, 570
EarI CTCTTC 5 cut(s) 296, 309, 516, 557, 570
EciI GGCGGA 2 cut(s) 308, 418
Eco31I GGTCTC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 320
EcoNI CCTNNNNNAGG 1 cut(s) 76
EgeI GGCGCC 1 cut(s) 137
EheI GGCGCC 1 cut(s) 137
Esp3I CGTCTC 2 cut(s) 157, 207
FaiI YATR 2 cut(s) 14, 180
FalI AAGNNNNNCTT 6 cut(s) 435, 467, 459, 491, 567, 599
FaqI GGGAC 1 cut(s) 18
Fnu4HI GCNGC 4 cut(s) 58, 193, 428, 471
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 4 cut(s) 58, 193, 428, 471
FspBI CTAG 2 cut(s) 90, 539
FspI TGCGCA 1 cut(s) 324
GlaI GCGC 2 cut(s) 137, 324
GluI GCNGC 4 cut(s) 58, 193, 428, 471
GsuI CTGGAG 2 cut(s) 58, 308
HaeII RGCGCY 1 cut(s) 139
HaeIII GGCC 1 cut(s) 275
HapII CCGG 4 cut(s) 26, 109, 118, 148
HhaI GCGC 2 cut(s) 138, 325
Hin1I GRCGYC 2 cut(s) 136, 169
Hin6I GCGC 2 cut(s) 136, 323
HinP1I GCGC 2 cut(s) 136, 323
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 1 cut(s) 343
HpaII CCGG 4 cut(s) 26, 109, 118, 148
HphI GGTGA 1 cut(s) 54
Hpy188I TCNGA 5 cut(s) 228, 348, 376, 510, 572
Hpy188III TCNNGA 2 cut(s) 75, 619
Hpy99I CGWCG 3 cut(s) 108, 171, 174
HpyAV CCTTC 3 cut(s) 39, 72, 407
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 594
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 144
HpyF3I CTNAG 3 cut(s) 186, 368, 569
HpySE526I ACGT 1 cut(s) 169
Hsp92I GRCGYC 2 cut(s) 136, 169
HspAI GCGC 2 cut(s) 136, 323
KasI GGCGCC 1 cut(s) 135
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 49
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 3 cut(s) 9, 295, 627
Lsp1109I GCAGC 3 cut(s) 204, 414, 457
LweI GCATC 1 cut(s) 525
MaeI CTAG 2 cut(s) 90, 539
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 128, 387
MalI GATC 1 cut(s) 51
MbiI CCGCTC 1 cut(s) 60
MboI GATC 1 cut(s) 49
MboII GAAGA 8 cut(s) 48, 278, 313, 326, 433, 533, 574, 587
Mly113I GGCGCC 1 cut(s) 136
MmeI TCCRAC 2 cut(s) 179, 605
MreI CGCCGGCG 1 cut(s) 25
MroNI GCCGGC 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 2 cut(s) 384, 477
MspI CCGG 4 cut(s) 26, 109, 118, 148
MwoI GCNNNNNNNGC 2 cut(s) 114, 144
NaeI GCCGGC 1 cut(s) 27
NarI GGCGCC 1 cut(s) 136
NdeII GATC 1 cut(s) 49
NgoMIV GCCGGC 1 cut(s) 25
NlaIV GGNNCC 2 cut(s) 83, 137
NmeAIII GCCGAG 2 cut(s) 150, 186
NsbI TGCGCA 1 cut(s) 324
PciSI GCTCTTC 1 cut(s) 516
PdiI GCCGGC 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 343
PflFI GACNNNGTC 1 cut(s) 168
PkrI GCNGC 4 cut(s) 59, 194, 429, 472
PluTI GGCGCC 1 cut(s) 139
PspN4I GGNNCC 2 cut(s) 83, 137
PstI CTGCAG 1 cut(s) 596
PsyI GACNNNGTC 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 2 cut(s) 384, 477
SatI GCNGC 4 cut(s) 58, 193, 428, 471
Sau3AI GATC 1 cut(s) 49
SfaNI GCATC 1 cut(s) 525
SfcI CTRYAG 1 cut(s) 592
SfoI GGCGCC 1 cut(s) 137
SgrAI CRCCGGYG 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SsiI CCGC 3 cut(s) 58, 293, 403
SspDI GGCGCC 1 cut(s) 135
SspMI CTAG 2 cut(s) 90, 539
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 52
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 2 cut(s) 384, 477
Tru9I TTAA 2 cut(s) 384, 477
TseI GCWGC 3 cut(s) 192, 427, 470
TspDTI ATGAA 1 cut(s) 495
TspGWI ACGGA 3 cut(s) 22, 189, 256
Tth111I GACNNNGTC 1 cut(s) 168
XagI CCTNNNNNAGG 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 2 cut(s) 90, 539
ZraI GACGTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.