Rroxscaffold_2G00120840

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009853
Physical Location & Seq
Forward (+)
53245931 .. 53247404
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120840.1

Sequence Viewer

Length: 651 bp
ATGGGGCGGAGCATATCAAAGTCGCCGTCGAGAGGAAGAAGCCGAAGGGATCGAAGCCGCTCACCCTATTCCTCCAGAAGGAACCGTTCTAGTGTCTCCCCCGTCGCCGAAGAAGCCGGTCGCCCAGTTACAGGCGCCTCTCCAACTCCTCCTCCTCCTCCTCCTCCTCCTCGTCTGACCACAACTGAACGGAAAAATGCCAAGAAAGAGGAGGAAGAAAAGGCCAGGCTACTACTGGAGGCGGAGCTGAAGAGATTAGAGGAAGAGACTGCGCAGAGAATAGAGGAAGCTATTCGGAAAAATGTAGAGGAGAGGCTGAGTTCTGATGATGTTAAGTTACAAGTAGAGAGGCGGATAGAGGAAGGTAGGAAGAAGCTGTTTGAGGATGTTCAAGCTCAACTTCAAAGAGAAAAGGAAGCTGCTCTTAATGAAGCAAGACAGAAACAAGAACAAGCTCGGAAAGAGAGAGAGGAGCTTGATAAGATGCTAGAGGAGAATAGGAGGAGGGTGGAAGAGGCTCAGAGAAGAGAAGCTTTGGAACTGCAGACCAAAGAGGAGGAACGCTATCGGGAGTTGGAGCTGATTCAGAGACAGAAAGAAGAGGCTGCAAGGAGAAAAAGATGGAAGAGGAAGAAGAACATGCACGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

216

Amino Acids

25.64

Weight (kDa)

9.97

Isoelectric Point (pI)

107.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 80 - 213 1e-30 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 134
AccBSI CCGCTC 1 cut(s) 60
AciI CCGC 4 cut(s) 7, 58, 242, 352
AclWI GGATC 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 3 cut(s) 32, 78, 131
AgsI TTSAA 2 cut(s) 392, 404
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 9 cut(s) 247, 290, 376, 395, 419, 455, 475, 533, 580
AluI AGCT 9 cut(s) 247, 290, 376, 395, 419, 455, 475, 533, 580
Alw26I GTCTC 3 cut(s) 100, 260, 583
AlwI GGATC 1 cut(s) 57
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 2 cut(s) 419, 605
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 2 cut(s) 137, 274
AsuHPI GGTGA 1 cut(s) 54
BanI GGYRCC 1 cut(s) 134
BbvI GCAGC 2 cut(s) 406, 592
BccI CCATC 1 cut(s) 615
BceAI ACGGC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 226
BcoDI GTCTC 3 cut(s) 100, 260, 583
BfaI CTAG 2 cut(s) 90, 488
BfmI CTRYAG 1 cut(s) 542
BfoI RGCGCY 1 cut(s) 138
BisI GCNGC 3 cut(s) 58, 420, 606
BlsI GCNGC 3 cut(s) 59, 421, 607
Bme1390I CCNGG 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 83, 136
BmrFI CCNGG 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 474
BmuI ACTGGG 1 cut(s) 119
BpmI CTGGAG 2 cut(s) 58, 257
BsaHI GRCGYC 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 78, 131
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 125, 240
BseBI CCWGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 3 cut(s) 32, 78, 131
BseMII CTCAG 2 cut(s) 308, 533
BseNI ACTGG 2 cut(s) 125, 240
BseXI GCAGC 2 cut(s) 406, 592
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 121
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 3 cut(s) 32, 78, 131
BsmAI GTCTC 3 cut(s) 100, 260, 583
BsnI GGCC 1 cut(s) 224
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 4 cut(s) 7, 58, 242, 352
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 2 cut(s) 309, 532
BspLI GGNNCC 2 cut(s) 83, 136
BspMAI CTGCAG 1 cut(s) 546
BspPI GGATC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 134
BsrBI CCGCTC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 2 cut(s) 125, 240
BssAI RCCGGY 1 cut(s) 116
BssMI GATC 1 cut(s) 49
BssNI GRCGYC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 6 cut(s) 245, 258, 507, 520, 594, 620
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 2 cut(s) 317, 519
BstENI CCTNNNNNAGG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 391
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 137, 274
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 3 cut(s) 100, 260, 583
BstMBI GATC 1 cut(s) 49
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 643
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 542
BstV1I GCAGC 2 cut(s) 406, 592
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 645
CfoI GCGC 2 cut(s) 137, 274
Cfr10I RCCGGY 1 cut(s) 116
CviAII CATG 1 cut(s) 640
DdeI CTNAG 2 cut(s) 317, 519
DinI GGCGCC 1 cut(s) 136
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eam1104I CTCTTC 6 cut(s) 245, 258, 507, 520, 594, 620
EarI CTCTTC 6 cut(s) 245, 258, 507, 520, 594, 620
EciI GGCGGA 3 cut(s) 22, 257, 367
Eco57I CTGAAG 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 224
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
FaeI CATG 1 cut(s) 643
FaiI YATR 2 cut(s) 14, 641
FalI AAGNNNNNCTT 6 cut(s) 384, 416, 408, 440, 517, 549
FatI CATG 1 cut(s) 639
Fnu4HI GCNGC 3 cut(s) 58, 420, 606
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 3 cut(s) 58, 420, 606
FspBI CTAG 2 cut(s) 90, 488
FspI TGCGCA 1 cut(s) 273
GlaI GCGC 2 cut(s) 136, 273
GluI GCNGC 3 cut(s) 58, 420, 606
GsuI CTGGAG 2 cut(s) 58, 257
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 117
HhaI GCGC 2 cut(s) 137, 274
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 1 cut(s) 643
Hin6I GCGC 2 cut(s) 135, 272
HinP1I GCGC 2 cut(s) 135, 272
HindIII AAGCTT 1 cut(s) 531
HinfI GANTC 1 cut(s) 583
HpaII CCGG 1 cut(s) 117
HphI GGTGA 1 cut(s) 54
Hpy188I TCNGA 6 cut(s) 177, 297, 325, 459, 522, 588
Hpy188III TCNNGA 3 cut(s) 30, 75, 569
Hpy99I CGWCG 2 cut(s) 31, 107
HpyAV CCTTC 3 cut(s) 39, 72, 356
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 3 cut(s) 544, 608, 643
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 317, 519
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 1 cut(s) 643
HspAI GCGC 2 cut(s) 135, 272
KasI GGCGCC 1 cut(s) 134
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 4 cut(s) 9, 244, 472, 577
LpnPI CCDG 7 cut(s) 88, 117, 130, 138, 211, 221, 238
Lsp1109I GCAGC 2 cut(s) 406, 592
LweI GCATC 1 cut(s) 474
MaeI CTAG 2 cut(s) 90, 488
MaeIII GTNAC 2 cut(s) 127, 336
MalI GATC 1 cut(s) 51
MbiI CCGCTC 1 cut(s) 60
MboI GATC 1 cut(s) 49
Mly113I GGCGCC 1 cut(s) 135
MmeI TCCRAC 2 cut(s) 167, 555
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 2 cut(s) 333, 426
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 113
NarI GGCGCC 1 cut(s) 135
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 643
NlaIV GGNNCC 2 cut(s) 83, 136
NsbI TGCGCA 1 cut(s) 273
NspI RCATGY 1 cut(s) 643
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 583
PkrI GCNGC 3 cut(s) 59, 421, 607
PluTI GGCGCC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 83, 136
PstI CTGCAG 1 cut(s) 546
SaqAI TTAA 2 cut(s) 333, 426
SatI GCNGC 3 cut(s) 58, 420, 606
Sau3AI GATC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 226
SfaNI GCATC 1 cut(s) 474
SfcI CTRYAG 1 cut(s) 542
SfoI GGCGCC 1 cut(s) 136
SsiI CCGC 4 cut(s) 7, 58, 242, 352
SspDI GGCGCC 1 cut(s) 134
SspMI CTAG 2 cut(s) 90, 488
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 29, 52
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 1 cut(s) 583
Tru1I TTAA 2 cut(s) 333, 426
Tru9I TTAA 2 cut(s) 333, 426
TseI GCWGC 2 cut(s) 419, 605
TspDTI ATGAA 1 cut(s) 444
TspGWI ACGGA 1 cut(s) 205
XagI CCTNNNNNAGG 1 cut(s) 76
XceI RCATGY 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 2 cut(s) 90, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.