Rh2AG303300

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0009853
Physical Location & Seq
Reverse (-)
38034779 .. 38042860
8082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG303300.1

Sequence Viewer

Length: 771 bp
ATGGGAGGACGGAGCATATCAAAGTCGCCGTCGAGAGGAAGAAGCCGAAGGGATCGAAGCCGCTCACCCTATTCCTCCAGAAGGAACCGTTCTAGTGTCTCCCCGCGTCGCCGGAGAAGCCGGTCGCCGAGTTACAGGCGCCGTAAGAGCCGGTCTCCGACGCCGAGACGACGTCGCAGGCATAGAACTAAGAGCAGCTCTCCGTCTCCTCCACCCAAGTCTCCTCCTCCTCCTCGTCTGACCACAACTGAACGGAAAAATGCCAAGAAAGAGGAGGAAGAAAAGGCCAGGCTACTACTGGAGGCGGAGCTGAAGAGATTAGAGGAAGAGACTGCGCAGAGAATAGAGGAAGCGATTCGGAAAAATGTAGAGGAGAGGCTGAGTTCTGATGATGTTAAGTTACAAGTAGAGAGGCGGATAGAGGAAGGTAGGAAGAAGCTGCTTGAGGATGTTCAAGCTCAACTTCAAAGAGAAAAGGAAGCTGCTCTTAATGAAGCAAGACAGAAACAAGAACAAGCTCGGAAAGAGAGAGAAGAGCTTGATAAGATGCTAGAGGAGAACAGGAGGAGGGTGGAAGAGGCTCAGAGAAGAGAAGCTTTGGAACTGCAGACCAAAGAGGAGGAACGCTATCGGGAGTTGGAGCTGATTCAGAGACAGAAAGAAGAGGCTGCAAGGAGAAAAAAGATGGAAGAGGAAGAAGAACATGCACGCCTGATGAAGTTGTCTAGTAAGAATAAATCTCGATCAAAGTCTTCTAGTATTGGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

256

Amino Acids

30.63

Weight (kDa)

10.79

Isoelectric Point (pI)

128.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 101 - 250 1.5e-34 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 175
Acc16I TGCGCA 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 138
AccBSI CCGCTC 1 cut(s) 63
AccII CGCG 1 cut(s) 106
AciI CCGC 4 cut(s) 61, 104, 305, 415
AclWI GGATC 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 332
AcyI GRCGYC 3 cut(s) 139, 161, 172
AfiI CCNNNNNNNGG 2 cut(s) 35, 81
AgsI TTSAA 2 cut(s) 455, 467
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 9 cut(s) 198, 310, 439, 458, 482, 518, 538, 596, 643
AluI AGCT 9 cut(s) 198, 310, 439, 458, 482, 518, 538, 596, 643
Alw26I GTCTC 7 cut(s) 103, 159, 160, 210, 225, 323, 646
AlwI GGATC 1 cut(s) 60
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 4 cut(s) 195, 439, 482, 668
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
Asp700I GAANNNNTTC 1 cut(s) 354
AspLEI GCGC 2 cut(s) 141, 337
AsuHPI GGTGA 1 cut(s) 57
BanI GGYRCC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 744
BbvI GCAGC 4 cut(s) 207, 426, 469, 655
BccI CCATC 1 cut(s) 679
BceAI ACGGC 2 cut(s) 13, 126
BciT130I CCWGG 1 cut(s) 289
BcoDI GTCTC 7 cut(s) 103, 159, 160, 210, 225, 323, 646
BfaI CTAG 4 cut(s) 93, 551, 726, 756
BfmI CTRYAG 1 cut(s) 605
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 5 cut(s) 61, 196, 440, 483, 669
BlsI GCNGC 5 cut(s) 62, 197, 441, 484, 670
Bme1390I CCNGG 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 86, 140
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 1 cut(s) 537
BpiI GAAGAC 1 cut(s) 744
BplI GAGNNNNNCTC 4 cut(s) 139, 171, 184, 216
BpmI CTGGAG 2 cut(s) 61, 320
BpuEI CTTGAG 1 cut(s) 464
BsaHI GRCGYC 3 cut(s) 139, 161, 172
BsaI GGTCTC 1 cut(s) 159
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 81
Bse118I RCCGGY 2 cut(s) 120, 150
Bse1I ACTGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 2 cut(s) 35, 81
BseMII CTCAG 2 cut(s) 371, 596
BseNI ACTGG 1 cut(s) 303
BseXI GCAGC 4 cut(s) 207, 426, 469, 655
Bsh1236I CGCG 1 cut(s) 106
Bsh1285I CGRYCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 125
BsiSI CCGG 3 cut(s) 112, 121, 151
BslI CCNNNNNNNGG 2 cut(s) 35, 81
BsmAI GTCTC 7 cut(s) 103, 159, 160, 210, 225, 323, 646
BsmBI CGTCTC 2 cut(s) 160, 210
BsnI GGCC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 52, 743
BspACI CCGC 4 cut(s) 61, 104, 305, 415
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 2 cut(s) 372, 595
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 86, 140
BspMAI CTGCAG 1 cut(s) 609
BspPI GGATC 1 cut(s) 60
BspQI GCTCTTC 1 cut(s) 528
BspT107I GGYRCC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 159
BsrBI CCGCTC 1 cut(s) 63
BsrFI RCCGGY 2 cut(s) 120, 150
BsrI ACTGG 1 cut(s) 303
BssAI RCCGGY 2 cut(s) 120, 150
BssMI GATC 2 cut(s) 52, 743
BssNI GRCGYC 3 cut(s) 139, 161, 172
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 7 cut(s) 308, 321, 528, 570, 583, 657, 684
BstACI GRCGYC 3 cut(s) 139, 161, 172
BstC8I GCNNGC 2 cut(s) 179, 709
BstDEI CTNAG 3 cut(s) 189, 380, 582
BstENI CCTNNNNNAGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 454
BstFNI CGCG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 2 cut(s) 141, 337
BstKTI GATC 2 cut(s) 55, 746
BstMAI GTCTC 7 cut(s) 103, 159, 160, 210, 225, 323, 646
BstMBI GATC 2 cut(s) 52, 743
BstMCI CGRYCG 1 cut(s) 125
BstMWI GCNNNNNNNGC 2 cut(s) 117, 147
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 707
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 605
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 4 cut(s) 207, 426, 469, 655
BstV2I GAAGAC 1 cut(s) 744
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 454
Cac8I GCNNGC 2 cut(s) 179, 709
CfoI GCGC 2 cut(s) 141, 337
Cfr10I RCCGGY 2 cut(s) 120, 150
CseI GACGC 2 cut(s) 95, 169
CviAII CATG 1 cut(s) 704
DdeI CTNAG 3 cut(s) 189, 380, 582
DinI GGCGCC 1 cut(s) 140
DpnI GATC 2 cut(s) 54, 745
DpnII GATC 2 cut(s) 52, 743
Eam1104I CTCTTC 7 cut(s) 308, 321, 528, 570, 583, 657, 684
EarI CTCTTC 7 cut(s) 308, 321, 528, 570, 583, 657, 684
EciI GGCGGA 2 cut(s) 320, 430
Eco31I GGTCTC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 332
EcoNI CCTNNNNNAGG 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 287
EgeI GGCGCC 1 cut(s) 140
EheI GGCGCC 1 cut(s) 140
Esp3I CGTCTC 2 cut(s) 160, 210
FaeI CATG 1 cut(s) 707
FaiI YATR 3 cut(s) 17, 183, 705
FalI AAGNNNNNCTT 6 cut(s) 447, 479, 471, 503, 580, 612
FatI CATG 1 cut(s) 703
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 5 cut(s) 61, 196, 440, 483, 669
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 5 cut(s) 61, 196, 440, 483, 669
FspBI CTAG 4 cut(s) 93, 551, 726, 756
FspI TGCGCA 1 cut(s) 336
GlaI GCGC 2 cut(s) 140, 336
GluI GCNGC 5 cut(s) 61, 196, 440, 483, 669
GsuI CTGGAG 2 cut(s) 61, 320
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 1 cut(s) 287
HapII CCGG 3 cut(s) 112, 121, 151
HgaI GACGC 2 cut(s) 95, 169
HhaI GCGC 2 cut(s) 141, 337
Hin1I GRCGYC 3 cut(s) 139, 161, 172
Hin1II CATG 1 cut(s) 707
Hin6I GCGC 2 cut(s) 139, 335
HinP1I GCGC 2 cut(s) 139, 335
HindIII AAGCTT 1 cut(s) 594
HinfI GANTC 2 cut(s) 355, 646
HpaII CCGG 3 cut(s) 112, 121, 151
HphI GGTGA 1 cut(s) 57
Hpy188I TCNGA 7 cut(s) 159, 240, 360, 388, 522, 585, 651
Hpy188III TCNNGA 4 cut(s) 33, 78, 632, 741
Hpy99I CGWCG 5 cut(s) 34, 111, 163, 174, 177
HpyAV CCTTC 3 cut(s) 42, 75, 419
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 3 cut(s) 607, 671, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 147
HpyF3I CTNAG 3 cut(s) 189, 380, 582
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 3 cut(s) 139, 161, 172
Hsp92II CATG 1 cut(s) 707
HspAI GCGC 2 cut(s) 139, 335
KasI GGCGCC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 52, 743
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 3 cut(s) 12, 307, 640
Lsp1109I GCAGC 4 cut(s) 207, 426, 469, 655
LweI GCATC 1 cut(s) 537
MaeI CTAG 4 cut(s) 93, 551, 726, 756
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 2 cut(s) 131, 399
MalI GATC 2 cut(s) 54, 745
MbiI CCGCTC 1 cut(s) 63
MboI GATC 2 cut(s) 52, 743
Mly113I GGCGCC 1 cut(s) 139
MmeI TCCRAC 2 cut(s) 182, 618
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 2 cut(s) 396, 489
MspI CCGG 3 cut(s) 112, 121, 151
MspR9I CCNGG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 2 cut(s) 117, 147
NarI GGCGCC 1 cut(s) 139
NdeII GATC 2 cut(s) 52, 743
NlaIII CATG 1 cut(s) 707
NlaIV GGNNCC 2 cut(s) 86, 140
NmeAIII GCCGAG 2 cut(s) 153, 189
NsbI TGCGCA 1 cut(s) 336
NspI RCATGY 1 cut(s) 707
PciSI GCTCTTC 1 cut(s) 528
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 2 cut(s) 355, 646
PflFI GACNNNGTC 1 cut(s) 171
PkrI GCNGC 5 cut(s) 62, 197, 441, 484, 670
PluTI GGCGCC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 86, 140
PstI CTGCAG 1 cut(s) 609
PsyI GACNNNGTC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 2 cut(s) 396, 489
SatI GCNGC 5 cut(s) 61, 196, 440, 483, 669
Sau3AI GATC 2 cut(s) 52, 743
ScrFI CCNGG 1 cut(s) 289
SfaNI GCATC 1 cut(s) 537
SfcI CTRYAG 1 cut(s) 605
SfoI GGCGCC 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
SsiI CCGC 4 cut(s) 61, 104, 305, 415
SspDI GGCGCC 1 cut(s) 138
SspMI CTAG 4 cut(s) 93, 551, 726, 756
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 1 cut(s) 175
TaqI TCGA 3 cut(s) 32, 55, 742
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 2 cut(s) 355, 646
Tru1I TTAA 2 cut(s) 396, 489
Tru9I TTAA 2 cut(s) 396, 489
TseI GCWGC 4 cut(s) 195, 439, 482, 668
TspDTI ATGAA 2 cut(s) 507, 731
TspGWI ACGGA 3 cut(s) 25, 192, 268
Tth111I GACNNNGTC 1 cut(s) 171
XagI CCTNNNNNAGG 1 cut(s) 79
XceI RCATGY 1 cut(s) 707
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 4 cut(s) 93, 551, 726, 756
ZraI GACGTC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.