RLG00000018737

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009853
Physical Location & Seq
Reverse (-)
34808891 .. 34810232
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018737

Sequence Viewer

Length: 780 bp
ATGGGACGGAGCATATCAAAGTCGCCGTCGAGAGGAAGAAGCCGACGGGATCGAAGCCGCTCACCCTACTCCTCCAGAAGGAACCGTTCTAGTGTCTCCCCCCGTCGCCGGAGAAGCCGGTCGCCCAGTTACAGGCGCCGTAAGAGCCGGTCTCCGACGCCGAGACGACGTCGCAGGCATAGAACTAAGAGCAGCTCGCGGTCTCCTCCACCCAAGTCTCCAACTCCTCCTCCTCCTCCTCCTCGTCTGACCACAACTGAACGGAAAAATGCCAAGAAAGAGGAGGAAGAAAAGGCCAGGCTACTACTGGAGGCGGAGCTGAAGAGATTAGAGGAAGAGACTGCGCAGAGAATAGAGGAAGCGATTCGGAAAAATGTAGAGGAGAGGCTGGGTTCTGATGATGTTAAGTTACAAGTAGAGAAGCGGATAGAGGAAGGTCGGAAGAAGCTGTTTGAGGATGTTCAAGCTCAACTTCAAAGAGAAAAGGAAGCTGCTCTTAATGAAGCAAGACAGAAACAAGAACAAGCTCGGAAAGAGAGAGAAGAGCTTGATAAGATGCTAGAGGAGAACAGGAGGAGGGTGGAAGAGGCTCAGAGAAGAGAAGCTTTGGAACTGCAGACCAAAGAGGAGGAACGCTATCGGGAGTTGGAGCTGATTCAGAGACAGAAAGAAGAGGCTGCAAGGAGAAAAAAGATGGAAGAGGAAGAAGAACATGCACGCCTGATGAAGTTGTCTAGTAAGAATAAATCTCGGTCAAAATCTTCTAGTATTGGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

260

Amino Acids

31.0

Weight (kDa)

10.8

Isoelectric Point (pI)

126.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 104 - 253 7.4e-34 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 172
Acc16I TGCGCA 1 cut(s) 345
AccB1I GGYRCC 1 cut(s) 135
AccBSI CCGCTC 1 cut(s) 60
AccII CGCG 1 cut(s) 199
AciI CCGC 4 cut(s) 58, 199, 314, 424
AclWI GGATC 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 341
AcyI GRCGYC 3 cut(s) 136, 158, 169
AfiI CCNNNNNNNGG 4 cut(s) 32, 78, 108, 132
AgsI TTSAA 2 cut(s) 464, 476
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 9 cut(s) 195, 319, 448, 467, 491, 527, 547, 605, 652
AluI AGCT 9 cut(s) 195, 319, 448, 467, 491, 527, 547, 605, 652
Alw26I GTCTC 7 cut(s) 100, 156, 157, 207, 222, 332, 655
AlwI GGATC 1 cut(s) 57
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 3 cut(s) 192, 491, 677
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 2 cut(s) 138, 346
AsuHPI GGTGA 1 cut(s) 54
BanI GGYRCC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 204, 478, 664
BccI CCATC 1 cut(s) 688
BceAI ACGGC 2 cut(s) 10, 123
BciT130I CCWGG 1 cut(s) 298
BcoDI GTCTC 7 cut(s) 100, 156, 157, 207, 222, 332, 655
BfaI CTAG 4 cut(s) 90, 560, 735, 765
BfmI CTRYAG 1 cut(s) 614
BfoI RGCGCY 1 cut(s) 139
BisI GCNGC 4 cut(s) 58, 193, 492, 678
BlsI GCNGC 4 cut(s) 59, 194, 493, 679
Bme1390I CCNGG 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 83, 137
BmrFI CCNGG 1 cut(s) 298
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 546
BmuI ACTGGG 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 136, 168
BpmI CTGGAG 2 cut(s) 58, 329
BsaHI GRCGYC 3 cut(s) 136, 158, 169
BsaI GGTCTC 2 cut(s) 156, 207
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 78, 108, 132
Bse118I RCCGGY 2 cut(s) 117, 147
Bse1I ACTGG 2 cut(s) 126, 312
BseBI CCWGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 4 cut(s) 32, 78, 108, 132
BseMII CTCAG 1 cut(s) 605
BseNI ACTGG 2 cut(s) 126, 312
BseXI GCAGC 3 cut(s) 204, 478, 664
BseYI CCCAGC 1 cut(s) 388
Bsh1236I CGCG 1 cut(s) 199
Bsh1285I CGRYCG 1 cut(s) 122
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 135
BsiEI CGRYCG 1 cut(s) 122
BsiSI CCGG 3 cut(s) 109, 118, 148
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 4 cut(s) 32, 78, 108, 132
BsmAI GTCTC 7 cut(s) 100, 156, 157, 207, 222, 332, 655
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 296
Bso31I GGTCTC 2 cut(s) 156, 207
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 4 cut(s) 58, 199, 314, 424
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 604
BspFNI CGCG 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 83, 137
BspMAI CTGCAG 1 cut(s) 618
BspPI GGATC 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 135
BspTNI GGTCTC 2 cut(s) 156, 207
BsrBI CCGCTC 1 cut(s) 60
BsrFI RCCGGY 2 cut(s) 117, 147
BsrI ACTGG 2 cut(s) 126, 312
BssAI RCCGGY 2 cut(s) 117, 147
BssMI GATC 1 cut(s) 49
BssNI GRCGYC 3 cut(s) 136, 158, 169
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 7 cut(s) 317, 330, 537, 579, 592, 666, 693
BstACI GRCGYC 3 cut(s) 136, 158, 169
BstC8I GCNNGC 3 cut(s) 176, 197, 718
BstDEI CTNAG 2 cut(s) 186, 591
BstENI CCTNNNNNAGG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 463
BstFNI CGCG 1 cut(s) 199
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 2 cut(s) 138, 346
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 7 cut(s) 100, 156, 157, 207, 222, 332, 655
BstMBI GATC 1 cut(s) 49
BstMCI CGRYCG 1 cut(s) 122
BstMWI GCNNNNNNNGC 2 cut(s) 114, 144
BstNI CCWGG 1 cut(s) 298
BstNSI RCATGY 1 cut(s) 716
BstSCI CCNGG 1 cut(s) 296
BstSFI CTRYAG 1 cut(s) 614
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 3 cut(s) 204, 478, 664
BsuRI GGCC 1 cut(s) 296
BtsCI GGATG 1 cut(s) 463
Cac8I GCNNGC 3 cut(s) 176, 197, 718
CfoI GCGC 2 cut(s) 138, 346
Cfr10I RCCGGY 2 cut(s) 117, 147
CseI GACGC 1 cut(s) 166
CviAII CATG 1 cut(s) 713
DdeI CTNAG 2 cut(s) 186, 591
DinI GGCGCC 1 cut(s) 137
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eam1104I CTCTTC 7 cut(s) 317, 330, 537, 579, 592, 666, 693
EarI CTCTTC 7 cut(s) 317, 330, 537, 579, 592, 666, 693
EciI GGCGGA 1 cut(s) 329
Eco31I GGTCTC 2 cut(s) 156, 207
Eco57I CTGAAG 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 296
EgeI GGCGCC 1 cut(s) 137
EheI GGCGCC 1 cut(s) 137
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 1 cut(s) 716
FaiI YATR 3 cut(s) 14, 180, 714
FalI AAGNNNNNCTT 6 cut(s) 456, 488, 480, 512, 589, 621
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 712
Fnu4HI GCNGC 4 cut(s) 58, 193, 492, 678
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 4 cut(s) 58, 193, 492, 678
FspBI CTAG 4 cut(s) 90, 560, 735, 765
FspI TGCGCA 1 cut(s) 345
GlaI GCGC 2 cut(s) 137, 345
GluI GCNGC 4 cut(s) 58, 193, 492, 678
GsaI CCCAGC 1 cut(s) 392
GsuI CTGGAG 2 cut(s) 58, 329
HaeII RGCGCY 1 cut(s) 139
HaeIII GGCC 1 cut(s) 296
HapII CCGG 3 cut(s) 109, 118, 148
HgaI GACGC 1 cut(s) 166
HhaI GCGC 2 cut(s) 138, 346
Hin1I GRCGYC 3 cut(s) 136, 158, 169
Hin1II CATG 1 cut(s) 716
Hin6I GCGC 2 cut(s) 136, 344
HinP1I GCGC 2 cut(s) 136, 344
HindIII AAGCTT 1 cut(s) 603
HinfI GANTC 2 cut(s) 364, 655
HpaII CCGG 3 cut(s) 109, 118, 148
HphI GGTGA 1 cut(s) 54
Hpy188I TCNGA 8 cut(s) 156, 249, 369, 397, 441, 531, 594, 660
Hpy188III TCNNGA 3 cut(s) 30, 75, 641
Hpy99I CGWCG 6 cut(s) 31, 48, 108, 160, 171, 174
HpyAV CCTTC 2 cut(s) 72, 428
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 616, 680, 716
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 144
HpyF3I CTNAG 2 cut(s) 186, 591
HpySE526I ACGT 1 cut(s) 169
Hsp92I GRCGYC 3 cut(s) 136, 158, 169
Hsp92II CATG 1 cut(s) 716
HspAI GCGC 2 cut(s) 136, 344
KasI GGCGCC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 49
LguI GCTCTTC 1 cut(s) 537
LmnI GCTCC 3 cut(s) 9, 316, 649
Lsp1109I GCAGC 3 cut(s) 204, 478, 664
LweI GCATC 1 cut(s) 546
MaeI CTAG 4 cut(s) 90, 560, 735, 765
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 128, 408
MalI GATC 1 cut(s) 51
MbiI CCGCTC 1 cut(s) 60
MboI GATC 1 cut(s) 49
Mly113I GGCGCC 1 cut(s) 136
MmeI TCCRAC 4 cut(s) 179, 245, 419, 627
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 2 cut(s) 405, 498
MspI CCGG 3 cut(s) 109, 118, 148
MspR9I CCNGG 1 cut(s) 298
MvaI CCWGG 1 cut(s) 298
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 114, 144
NarI GGCGCC 1 cut(s) 136
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 716
NlaIV GGNNCC 2 cut(s) 83, 137
NmeAIII GCCGAG 1 cut(s) 186
NsbI TGCGCA 1 cut(s) 345
NspI RCATGY 1 cut(s) 716
PciSI GCTCTTC 1 cut(s) 537
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 364, 655
PflFI GACNNNGTC 1 cut(s) 168
PkrI GCNGC 4 cut(s) 59, 194, 493, 679
PluTI GGCGCC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 296
PspFI CCCAGC 1 cut(s) 388
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 2 cut(s) 83, 137
PstI CTGCAG 1 cut(s) 618
PsyI GACNNNGTC 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 537
SaqAI TTAA 2 cut(s) 405, 498
SatI GCNGC 4 cut(s) 58, 193, 492, 678
Sau3AI GATC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 298
SfaNI GCATC 1 cut(s) 546
SfcI CTRYAG 1 cut(s) 614
SfoI GGCGCC 1 cut(s) 137
SsiI CCGC 4 cut(s) 58, 199, 314, 424
SspDI GGCGCC 1 cut(s) 135
SspMI CTAG 4 cut(s) 90, 560, 735, 765
StyD4I CCNGG 1 cut(s) 296
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 172
TaqI TCGA 2 cut(s) 29, 52
TaqII GACCGA 1 cut(s) 741
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 2 cut(s) 364, 655
Tru1I TTAA 2 cut(s) 405, 498
Tru9I TTAA 2 cut(s) 405, 498
TseI GCWGC 3 cut(s) 192, 491, 677
TspDTI ATGAA 2 cut(s) 516, 740
TspGWI ACGGA 2 cut(s) 22, 277
Tth111I GACNNNGTC 1 cut(s) 168
XagI CCTNNNNNAGG 1 cut(s) 76
XceI RCATGY 1 cut(s) 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 4 cut(s) 90, 560, 735, 765
ZraI GACGTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.