FvH4_1g25270

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009853
Physical Location & Seq
Reverse (-)
17062263 .. 17063906
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25270.t3

Sequence Viewer

Length: 780 bp
ATGGGACGGAGCATATCAAAGTCGCCGTCGAGAGGAAGAAGCCGACGGGACCGAAGCCGCTCACCCTACTCCAGAAGGAATCGTTCTAGTGTCTCCCCGCGTCGCCGGCGGACCCGGTCGCCGAGTTACCGGCGCCGCAAGAGTCGCTCTCCTACGCCGAGACGACGTCGCAGGCATAGAAGCAAGAGCAGCTCTCCGTCTCCTCCACCTAAGTCTCCGACTCCTGCCCCTCGCCCGACGACAACTGATCGGAAAAATGCCGCCGATAAGGTCAAGAAGGAGGAGGAGGAAAAGGCCAGGTTACTACTGGAGGCGGAGCTGAAGAGATTGGAGGAGGAGACGGCGCAGAGAATAGAGGAAGCGATTCGGAGAAATGTAGAGGAGAGGCTGAGCTCTGAGGAAGTTAAGATGGAAATAGAGAGGCGGATAGAGGAAGGCCAGAAGAAGCTGCTTGAGGATGTGCAAGCTCAGCTTCAGAAAGAGAAAGACGCTGCTCTTAATGAAGCGAGACAGAAAGAAGAACAAGCTCGAAGAGAGAGAGAAGAGCTGGATAAGATGCTGGAGGAGAATAGGAGGAGGGTGGAAGAGGCTCAGAGAAGAGAAGCTATGGAACTGCAGAGCAAAGAGGAGGAACGGTATCGGGAGTTGGAGCTGATTCAGAGACAGAAAGAAGAGGCTGCTAGGAGAAAAAAGATGGAAGAGGAAGAAGAACATGCACGCCTCATGAAGTTGTCTAGTAAGAATAAATCTCGGTCAAAGTCTTCTAGTATTGGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

260

Amino Acids

30.99

Weight (kDa)

10.58

Isoelectric Point (pI)

134.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 104 - 253 1e-33 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 132
AccBSI CCGCTC 1 cut(s) 60
AccII CGCG 1 cut(s) 100
AciI CCGC 7 cut(s) 58, 98, 109, 136, 261, 314, 424
AcuI CTGAAG 2 cut(s) 341, 458
AcyI GRCGYC 2 cut(s) 133, 166
AfiI CCNNNNNNNGG 1 cut(s) 32
AjnI CCWGG 1 cut(s) 296
Alw21I GWGCWC 1 cut(s) 395
Alw26I GTCTC 7 cut(s) 97, 154, 204, 219, 332, 502, 655
AoxI GGCC 2 cut(s) 294, 436
ApeKI GCWGC 4 cut(s) 189, 448, 491, 677
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 2 cut(s) 135, 346
AspS9I GGNCC 2 cut(s) 49, 111
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 54
AvaII GGWCC 2 cut(s) 49, 111
BanI GGYRCC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 4 cut(s) 201, 435, 478, 664
BccI CCATC 2 cut(s) 403, 688
BceAI ACGGC 2 cut(s) 10, 357
BciT130I CCWGG 1 cut(s) 298
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 7 cut(s) 97, 154, 204, 219, 332, 502, 655
BfaI CTAG 4 cut(s) 87, 681, 735, 765
BfmI CTRYAG 1 cut(s) 614
BfoI RGCGCY 1 cut(s) 136
BisI GCNGC 7 cut(s) 58, 136, 190, 261, 449, 492, 678
BlpI GCTNAGC 2 cut(s) 389, 468
BlsI GCNGC 7 cut(s) 59, 137, 191, 262, 450, 493, 679
Bme1390I CCNGG 2 cut(s) 115, 298
Bme18I GGWCC 2 cut(s) 49, 111
BmgT120I GGNCC 2 cut(s) 49, 111
BmiI GGNNCC 3 cut(s) 50, 113, 134
BmrFI CCNGG 2 cut(s) 115, 298
BmsI GCATC 1 cut(s) 546
BpiI GAAGAC 1 cut(s) 753
BplI GAGNNNNNCTC 4 cut(s) 133, 165, 178, 210
BpmI CTGGAG 3 cut(s) 55, 329, 581
Bpu1102I GCTNAGC 2 cut(s) 389, 468
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 115
BsaHI GRCGYC 2 cut(s) 133, 166
BsaXI ACNNNNNCTCC 2 cut(s) 620, 650
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse118I RCCGGY 2 cut(s) 105, 129
Bse1I ACTGG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 298
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 4 cut(s) 380, 387, 482, 605
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 9 cut(s) 192, 296, 299, 347, 350, 395, 578, 589, 641
BseXI GCAGC 4 cut(s) 201, 435, 478, 664
Bsh1236I CGCG 1 cut(s) 100
Bsh1285I CGRYCG 1 cut(s) 119
BshFI GGCC 2 cut(s) 296, 438
BshNI GGYRCC 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 395
BsiSI CCGG 3 cut(s) 106, 115, 130
BslFI GGGAC 2 cut(s) 18, 62
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 7 cut(s) 97, 154, 204, 219, 332, 502, 655
BsmBI CGTCTC 3 cut(s) 154, 204, 332
BsmFI GGGAC 2 cut(s) 18, 62
BsnI GGCC 2 cut(s) 296, 438
Bsp1286I GDGCHC 1 cut(s) 395
Bsp143I GATC 1 cut(s) 247
Bsp1720I GCTNAGC 2 cut(s) 389, 468
BspACI CCGC 7 cut(s) 58, 98, 109, 136, 261, 314, 424
BspANI GGCC 2 cut(s) 296, 438
BspCNI CTCAG 4 cut(s) 381, 388, 481, 604
BspFNI CGCG 1 cut(s) 100
BspHI TCATGA 1 cut(s) 723
BspLI GGNNCC 3 cut(s) 50, 113, 134
BspMAI CTGCAG 1 cut(s) 618
BspQI GCTCTTC 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 132
BsrBI CCGCTC 1 cut(s) 60
BsrFI RCCGGY 2 cut(s) 105, 129
BsrI ACTGG 1 cut(s) 312
BssAI RCCGGY 2 cut(s) 105, 129
BssMI GATC 1 cut(s) 247
BssNI GRCGYC 2 cut(s) 133, 166
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 636
Bst6I CTCTTC 7 cut(s) 317, 526, 537, 579, 592, 666, 693
BstACI GRCGYC 2 cut(s) 133, 166
BstC8I GCNNGC 4 cut(s) 107, 173, 465, 718
BstDEI CTNAG 5 cut(s) 210, 389, 396, 468, 591
BstF5I GGATG 1 cut(s) 463
BstFNI CGCG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 2 cut(s) 135, 346
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 7 cut(s) 97, 154, 204, 219, 332, 502, 655
BstMBI GATC 1 cut(s) 247
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 4 cut(s) 106, 144, 189, 469
BstNI CCWGG 1 cut(s) 298
BstNSI RCATGY 1 cut(s) 716
BstSCI CCNGG 2 cut(s) 113, 296
BstSFI CTRYAG 1 cut(s) 614
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 4 cut(s) 201, 435, 478, 664
BstV2I GAAGAC 1 cut(s) 753
BsuRI GGCC 2 cut(s) 296, 438
BtsCI GGATG 1 cut(s) 463
Cac8I GCNNGC 4 cut(s) 107, 173, 465, 718
CciI TCATGA 1 cut(s) 723
CfoI GCGC 2 cut(s) 135, 346
Cfr10I RCCGGY 2 cut(s) 105, 129
Cfr13I GGNCC 2 cut(s) 49, 111
CseI GACGC 2 cut(s) 89, 497
CviAII CATG 2 cut(s) 713, 724
DdeI CTNAG 5 cut(s) 210, 389, 396, 468, 591
DinI GGCGCC 1 cut(s) 134
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 7 cut(s) 317, 526, 537, 579, 592, 666, 693
EarI CTCTTC 7 cut(s) 317, 526, 537, 579, 592, 666, 693
EciI GGCGGA 3 cut(s) 124, 329, 439
Ecl136II GAGCTC 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 395
Eco47I GGWCC 2 cut(s) 49, 111
Eco53kI GAGCTC 1 cut(s) 393
Eco57I CTGAAG 2 cut(s) 341, 458
EcoICRI GAGCTC 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 296
EcoT38I GRGCYC 1 cut(s) 395
EgeI GGCGCC 1 cut(s) 134
EheI GGCGCC 1 cut(s) 134
Esp3I CGTCTC 3 cut(s) 154, 204, 332
FaeI CATG 2 cut(s) 716, 727
FaiI YATR 5 cut(s) 14, 177, 608, 714, 725
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FaqI GGGAC 2 cut(s) 18, 62
FatI CATG 2 cut(s) 712, 723
FauI CCCGC 1 cut(s) 105
Fnu4HI GCNGC 7 cut(s) 58, 136, 190, 261, 449, 492, 678
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 7 cut(s) 58, 136, 190, 261, 449, 492, 678
FspBI CTAG 4 cut(s) 87, 681, 735, 765
GlaI GCGC 2 cut(s) 134, 345
GluI GCNGC 7 cut(s) 58, 136, 190, 261, 449, 492, 678
GsuI CTGGAG 3 cut(s) 55, 329, 581
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 2 cut(s) 296, 438
HapII CCGG 3 cut(s) 106, 115, 130
HgaI GACGC 2 cut(s) 89, 497
HhaI GCGC 2 cut(s) 135, 346
Hin1I GRCGYC 2 cut(s) 133, 166
Hin1II CATG 2 cut(s) 716, 727
Hin6I GCGC 2 cut(s) 133, 344
HinP1I GCGC 2 cut(s) 133, 344
HinfI GANTC 5 cut(s) 79, 142, 220, 364, 655
HpaII CCGG 3 cut(s) 106, 115, 130
HphI GGTGA 1 cut(s) 54
Hpy188I TCNGA 7 cut(s) 219, 252, 369, 397, 477, 594, 660
Hpy188III TCNNGA 5 cut(s) 30, 72, 274, 641, 724
Hpy99I CGWCG 6 cut(s) 31, 48, 105, 168, 171, 241
HpyAV CCTTC 3 cut(s) 69, 271, 428
HpyCH4III ACNGT 1 cut(s) 636
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 463, 616, 716
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 144, 189, 469
HpyF3I CTNAG 5 cut(s) 210, 389, 396, 468, 591
HpySE526I ACGT 1 cut(s) 166
Hsp92I GRCGYC 2 cut(s) 133, 166
Hsp92II CATG 2 cut(s) 716, 727
HspAI GCGC 2 cut(s) 133, 344
KasI GGCGCC 1 cut(s) 132
KroI GCCGGC 1 cut(s) 105
KroNI GCCGGC 1 cut(s) 107
Kzo9I GATC 1 cut(s) 247
LguI GCTCTTC 1 cut(s) 537
LmnI GCTCC 3 cut(s) 9, 316, 649
Lsp1109I GCAGC 4 cut(s) 201, 435, 478, 664
LweI GCATC 1 cut(s) 546
MaeI CTAG 4 cut(s) 87, 681, 735, 765
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 2 cut(s) 125, 300
MalI GATC 1 cut(s) 249
MbiI CCGCTC 1 cut(s) 60
MboI GATC 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 395
Mly113I GGCGCC 1 cut(s) 133
MlyI GAGTC 2 cut(s) 151, 214
MmeI TCCRAC 2 cut(s) 242, 627
MreI CGCCGGCG 1 cut(s) 105
MroNI GCCGGC 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 2 cut(s) 405, 498
MspI CCGG 3 cut(s) 106, 115, 130
MspR9I CCNGG 2 cut(s) 115, 298
MvaI CCWGG 1 cut(s) 298
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 4 cut(s) 106, 144, 189, 469
NaeI GCCGGC 1 cut(s) 107
NarI GGCGCC 1 cut(s) 133
NciI CCSGG 1 cut(s) 115
NdeII GATC 1 cut(s) 247
NgoMIV GCCGGC 1 cut(s) 105
NlaIII CATG 2 cut(s) 716, 727
NlaIV GGNNCC 3 cut(s) 50, 113, 134
NmeAIII GCCGAG 2 cut(s) 147, 183
NspI RCATGY 1 cut(s) 716
PagI TCATGA 1 cut(s) 723
PciSI GCTCTTC 1 cut(s) 537
PdiI GCCGGC 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 3 cut(s) 79, 364, 655
PflFI GACNNNGTC 2 cut(s) 115, 165
PkrI GCNGC 7 cut(s) 59, 137, 191, 262, 450, 493, 679
PleI GAGTC 2 cut(s) 150, 214
PluTI GGCGCC 1 cut(s) 136
PpsI GAGTC 2 cut(s) 150, 214
Psp124BI GAGCTC 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 3 cut(s) 50, 113, 134
PspPI GGNCC 2 cut(s) 49, 111
PstI CTGCAG 1 cut(s) 618
PsyI GACNNNGTC 2 cut(s) 115, 165
SacI GAGCTC 1 cut(s) 395
SapI GCTCTTC 1 cut(s) 537
SaqAI TTAA 2 cut(s) 405, 498
SatI GCNGC 7 cut(s) 58, 136, 190, 261, 449, 492, 678
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 2 cut(s) 49, 111
SchI GAGTC 2 cut(s) 151, 214
ScrFI CCNGG 2 cut(s) 115, 298
SduI GDGCHC 1 cut(s) 395
SfaNI GCATC 1 cut(s) 546
SfcI CTRYAG 1 cut(s) 614
SfoI GGCGCC 1 cut(s) 134
SgrAI CRCCGGYG 1 cut(s) 105
SinI GGWCC 2 cut(s) 49, 111
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
SsiI CCGC 7 cut(s) 58, 98, 109, 136, 261, 314, 424
SspDI GGCGCC 1 cut(s) 132
SspMI CTAG 4 cut(s) 87, 681, 735, 765
SstI GAGCTC 1 cut(s) 395
StyD4I CCNGG 2 cut(s) 113, 296
TaaI ACNGT 1 cut(s) 636
TaiI ACGT 1 cut(s) 169
TaqI TCGA 2 cut(s) 29, 529
TaqII GACCGA 2 cut(s) 66, 741
TauI GCSGC 3 cut(s) 60, 138, 263
TfiI GAWTC 3 cut(s) 79, 364, 655
Tru1I TTAA 2 cut(s) 405, 498
Tru9I TTAA 2 cut(s) 405, 498
TseI GCWGC 4 cut(s) 189, 448, 491, 677
TspDTI ATGAA 2 cut(s) 516, 740
TspGWI ACGGA 2 cut(s) 22, 186
Tth111I GACNNNGTC 2 cut(s) 115, 165
VpaK11BI GGWCC 2 cut(s) 49, 111
XceI RCATGY 1 cut(s) 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 4 cut(s) 87, 681, 735, 765
ZraI GACGTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.