Rh2DG327300

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009853
Physical Location & Seq
Reverse (-)
41299375 .. 41302849
3475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG327300.1

Sequence Viewer

Length: 606 bp
ATGGGAGGACGGAGCATATCAAAGTCGCCGTCGAGAGGAAGAAGCCGAAGGGATCGAAGCCGCTCACCCTATTCCTCCAGAAGGAACCGTTCTAGTGTCTCCCCGCGTCGCCGGAGAAGCCGGTCGCCGAGTTACAGGCGCCGTAAGAGCCGGTCTCCGACGCCGAGACGACGTCGCAGGCATAGAACTAAGAGCAGCTCTCCGTCTCCTCCACCCAAGTCTCCTCCTCCTCCTCGTCTGACCACAACTGAACGGAAAAATGCCAAGAAAGAGGAGGAAGAAAAGGCCAGGCTACTACTGGAGGCGGAGCTGAAGAGATTAGAGGAAGAGACTGCGCAGAGAATAGAGGAAGCGATTCGGAAAAATGTAGAGGAGAGGCTGAGTTCTGATGATGTTAAGTTACAAGTAGAGAGGCGGATAGAGGAAGGTAGGAAGAAGCTGCTTGAGGATGTTCAAGCTCAACTTCAAAGAGAAAAGGAAGCTGCTCTTAATGAAGCAAGACAGAAACAAGTATCCAGTCCTCAAAGCAAAGAGAAAACAGCTAGAGAAGGAAGAGTTATACACCAAACTATCCCAGACTTTCAAGGAAAAATTCACATCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

201

Amino Acids

23.59

Weight (kDa)

11.46

Isoelectric Point (pI)

128.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 101 - 180 1.1e-16 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 175
Acc16I TGCGCA 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 138
AccBSI CCGCTC 1 cut(s) 63
AccII CGCG 1 cut(s) 106
AciI CCGC 4 cut(s) 61, 104, 305, 415
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 591
AcuI CTGAAG 1 cut(s) 332
AcyI GRCGYC 3 cut(s) 139, 161, 172
AfiI CCNNNNNNNGG 2 cut(s) 35, 81
AgsI TTSAA 3 cut(s) 455, 467, 584
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 6 cut(s) 198, 310, 439, 458, 482, 542
AluI AGCT 6 cut(s) 198, 310, 439, 458, 482, 542
Alw26I GTCTC 6 cut(s) 103, 159, 160, 210, 225, 323
AlwI GGATC 1 cut(s) 60
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 3 cut(s) 195, 439, 482
ApoI RAATTY 1 cut(s) 591
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
Asp700I GAANNNNTTC 1 cut(s) 354
AspLEI GCGC 2 cut(s) 141, 337
AsuHPI GGTGA 1 cut(s) 57
BanI GGYRCC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 207, 426, 469
BceAI ACGGC 2 cut(s) 13, 126
BciT130I CCWGG 1 cut(s) 289
BciVI GTATCC 1 cut(s) 523
BcoDI GTCTC 6 cut(s) 103, 159, 160, 210, 225, 323
BfaI CTAG 2 cut(s) 93, 543
BfoI RGCGCY 1 cut(s) 142
BfuI GTATCC 1 cut(s) 523
BisI GCNGC 4 cut(s) 61, 196, 440, 483
BlsI GCNGC 4 cut(s) 62, 197, 441, 484
Bme1390I CCNGG 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 86, 140
BmrFI CCNGG 1 cut(s) 289
BplI GAGNNNNNCTC 4 cut(s) 139, 171, 184, 216
BpmI CTGGAG 2 cut(s) 61, 320
BpuEI CTTGAG 1 cut(s) 464
BsaHI GRCGYC 3 cut(s) 139, 161, 172
BsaI GGTCTC 1 cut(s) 159
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 81
Bse118I RCCGGY 2 cut(s) 120, 150
Bse1I ACTGG 2 cut(s) 303, 516
BseBI CCWGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 2 cut(s) 35, 81
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 2 cut(s) 303, 516
BseRI GAGGAG 7 cut(s) 198, 213, 216, 219, 222, 287, 386
BseXI GCAGC 3 cut(s) 207, 426, 469
Bsh1236I CGCG 1 cut(s) 106
Bsh1285I CGRYCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 287
BshNI GGYRCC 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 125
BsiSI CCGG 3 cut(s) 112, 121, 151
BslI CCNNNNNNNGG 2 cut(s) 35, 81
BsmAI GTCTC 6 cut(s) 103, 159, 160, 210, 225, 323
BsmBI CGTCTC 2 cut(s) 160, 210
BsnI GGCC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 4 cut(s) 61, 104, 305, 415
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 372
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 86, 140
BspPI GGATC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 159
BsrBI CCGCTC 1 cut(s) 63
BsrFI RCCGGY 2 cut(s) 120, 150
BsrI ACTGG 2 cut(s) 303, 516
BssAI RCCGGY 2 cut(s) 120, 150
BssMI GATC 1 cut(s) 52
BssNI GRCGYC 3 cut(s) 139, 161, 172
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 3 cut(s) 308, 321, 547
BstACI GRCGYC 3 cut(s) 139, 161, 172
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 2 cut(s) 189, 380
BstENI CCTNNNNNAGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 454
BstFNI CGCG 1 cut(s) 106
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 2 cut(s) 141, 337
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 6 cut(s) 103, 159, 160, 210, 225, 323
BstMBI GATC 1 cut(s) 52
BstMCI CGRYCG 1 cut(s) 125
BstMWI GCNNNNNNNGC 2 cut(s) 117, 147
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 287
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 3 cut(s) 207, 426, 469
BsuI GTATCC 1 cut(s) 523
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 179
CfoI GCGC 2 cut(s) 141, 337
Cfr10I RCCGGY 2 cut(s) 120, 150
CseI GACGC 2 cut(s) 95, 169
DdeI CTNAG 2 cut(s) 189, 380
DinI GGCGCC 1 cut(s) 140
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eam1104I CTCTTC 3 cut(s) 308, 321, 547
EarI CTCTTC 3 cut(s) 308, 321, 547
EciI GGCGGA 2 cut(s) 320, 430
Eco31I GGTCTC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 332
EcoNI CCTNNNNNAGG 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 287
EgeI GGCGCC 1 cut(s) 140
EheI GGCGCC 1 cut(s) 140
Esp3I CGTCTC 2 cut(s) 160, 210
FaiI YATR 3 cut(s) 17, 183, 560
FalI AAGNNNNNCTT 4 cut(s) 447, 479, 471, 503
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 4 cut(s) 61, 196, 440, 483
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 4 cut(s) 61, 196, 440, 483
FspBI CTAG 2 cut(s) 93, 543
FspI TGCGCA 1 cut(s) 336
GlaI GCGC 2 cut(s) 140, 336
GluI GCNGC 4 cut(s) 61, 196, 440, 483
GsuI CTGGAG 2 cut(s) 61, 320
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 1 cut(s) 287
HapII CCGG 3 cut(s) 112, 121, 151
HgaI GACGC 2 cut(s) 95, 169
HhaI GCGC 2 cut(s) 141, 337
Hin1I GRCGYC 3 cut(s) 139, 161, 172
Hin6I GCGC 2 cut(s) 139, 335
HinP1I GCGC 2 cut(s) 139, 335
HinfI GANTC 1 cut(s) 355
HpaII CCGG 3 cut(s) 112, 121, 151
HphI GGTGA 1 cut(s) 57
Hpy188I TCNGA 4 cut(s) 159, 240, 360, 388
Hpy188III TCNNGA 2 cut(s) 33, 78
Hpy99I CGWCG 5 cut(s) 34, 111, 163, 174, 177
HpyAV CCTTC 4 cut(s) 42, 75, 419, 542
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 147
HpyF3I CTNAG 2 cut(s) 189, 380
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 3 cut(s) 139, 161, 172
HspAI GCGC 2 cut(s) 139, 335
KasI GGCGCC 1 cut(s) 138
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 2 cut(s) 12, 307
Lsp1109I GCAGC 3 cut(s) 207, 426, 469
MaeI CTAG 2 cut(s) 93, 543
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 2 cut(s) 131, 399
MalI GATC 1 cut(s) 54
MbiI CCGCTC 1 cut(s) 63
MboI GATC 1 cut(s) 52
MboII GAAGA 7 cut(s) 51, 290, 325, 338, 445, 564, 592
MluCI AATT 1 cut(s) 591
Mly113I GGCGCC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 2 cut(s) 396, 489
MspI CCGG 3 cut(s) 112, 121, 151
MspR9I CCNGG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 2 cut(s) 117, 147
NarI GGCGCC 1 cut(s) 139
NdeII GATC 1 cut(s) 52
NlaIV GGNNCC 2 cut(s) 86, 140
NmeAIII GCCGAG 2 cut(s) 153, 189
NsbI TGCGCA 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 1 cut(s) 355
PflFI GACNNNGTC 1 cut(s) 171
PkrI GCNGC 4 cut(s) 62, 197, 441, 484
PluTI GGCGCC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 2 cut(s) 86, 140
PsyI GACNNNGTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 396, 489
SatI GCNGC 4 cut(s) 61, 196, 440, 483
Sau3AI GATC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 289
SetI ASST 8 cut(s) 175, 200, 312, 430, 441, 460, 484, 544
SfoI GGCGCC 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 1 cut(s) 591
SsiI CCGC 4 cut(s) 61, 104, 305, 415
SspDI GGCGCC 1 cut(s) 138
SspMI CTAG 2 cut(s) 93, 543
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 32, 55
TasI AATT 1 cut(s) 591
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 2 cut(s) 396, 489
Tru9I TTAA 2 cut(s) 396, 489
TseI GCWGC 3 cut(s) 195, 439, 482
TspDTI ATGAA 1 cut(s) 507
TspGWI ACGGA 3 cut(s) 25, 192, 268
Tth111I GACNNNGTC 1 cut(s) 171
XagI CCTNNNNNAGG 1 cut(s) 79
XapI RAATTY 1 cut(s) 591
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 2 cut(s) 93, 543
ZraI GACGTC 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.