MD15G1137800.v1.1

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0009853
Physical Location & Seq
Forward (+)
10104413 .. 10106125
1713 bp
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UTR
Exon/CDS
Intron
MD15G1137800.v1.1.491

Sequence Viewer

Length: 861 bp
ATGCGTATTTTGCCCATCGTAGGTGAGAGAGATCAGAAAGGACAAAAAAGGGAAAAAGAGAAGATGGGACGGAGCGTATCGAAGTCGCCGTCGTACAGCAGAGGTCGAAGCCGGAGAGATCGAAGCCGCTCGCCTTACTCCACCTCCAGAAGAAATCGTTCGAGTGCCTCCCCGCGCCGCCGTAGGAGTCGGTCGGCAAGTTACAGGCGACGCAAGAGTCGGTCTCCGACACCCAGACGACTTAATAGACGACATAGAAGCAGAAGCAGAAGCAGCTCTTTGTCTCCTCCTTTGCCCAAATCTCACAGTCCACGCCTGACCTCAAACGAACGCAAAAATGCTGCTGACAAACTCAAGAAAGAGGAGGAAGAAAAAATCAGGCGGCAGCAGGAGGCCGAACTCAAACAGTTGGAAGAGGAGACTGCAAGGAGACTTGAGGAAGCGATTCGGAAAAATGTGGAGGAGAGGCTGGCTTCAGATGAAGTTAGGTTAGACATTGAGAGGCGTATAGAAGAAGGTCGGGAGAAATTGTTTGAGGATGTTAAGGCTCAACTTGATAAGGAAAAGGAAGCTGCTCTTGTTGAAGCAAGACGGAAAGAAGAACAAGCTCGGAAAGAGAGAGAAGAGCTTGATAAGATGCTGGAGGAGAACCGGAGGAGGGTGGAAGAGGCTCAGAGAAGAGAAGCTTTGGAACTTCAGACCAAAGAAGAGGAACGGTATCGAGAGTTGGAGCTGATTCAGAGACAAAAAGAAGAGGCTGCGAGGAGAAAAAAACTGGAAGAGGAAGAAGAACATGCAAATCTGATGAAGTTGTCAAGTAAGAGTAAATCTCGGTCAAAGTCTTTTGGTGGTGGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

287

Amino Acids

34.23

Weight (kDa)

10.51

Isoelectric Point (pI)

112.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 130 - 280 6.7e-34 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 216
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 1 cut(s) 175
AciI CCGC 4 cut(s) 127, 173, 178, 382
AcuI CTGAAG 2 cut(s) 459, 680
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 20, 658
AgsI TTSAA 1 cut(s) 584
AluBI AGCT 6 cut(s) 276, 572, 608, 628, 686, 733
AluI AGCT 6 cut(s) 276, 572, 608, 628, 686, 733
Alw26I GTCTC 5 cut(s) 228, 288, 413, 424, 736
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 5 cut(s) 273, 341, 385, 572, 758
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp700I GAANNNNTTC 2 cut(s) 157, 444
AspLEI GCGC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 35
BbvI GCAGC 5 cut(s) 285, 328, 397, 559, 745
BccI CCATC 2 cut(s) 23, 58
BceAI ACGGC 2 cut(s) 73, 165
BcoDI GTCTC 5 cut(s) 228, 288, 413, 424, 736
BisI GCNGC 8 cut(s) 127, 178, 274, 342, 383, 386, 573, 759
BlsI GCNGC 8 cut(s) 128, 179, 275, 343, 384, 387, 574, 760
BmsI GCATC 1 cut(s) 627
BplI GAGNNNNNCTC 4 cut(s) 208, 240, 814, 846
BpmI CTGGAG 2 cut(s) 130, 662
BpuEI CTTGAG 2 cut(s) 338, 455
BsaI GGTCTC 1 cut(s) 228
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 515, 545
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 658
Bse1I ACTGG 1 cut(s) 780
BseGI GGATG 1 cut(s) 544
BseLI CCNNNNNNNGG 2 cut(s) 20, 658
BseMII CTCAG 1 cut(s) 686
BseNI ACTGG 1 cut(s) 780
BseRI GAGGAG 7 cut(s) 276, 377, 431, 476, 659, 670, 778
BseXI GCAGC 5 cut(s) 285, 328, 397, 559, 745
Bsh1236I CGCG 1 cut(s) 175
Bsh1285I CGRYCG 1 cut(s) 194
BshFI GGCC 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 194
BsiSI CCGG 2 cut(s) 112, 652
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 20, 658
BsmAI GTCTC 5 cut(s) 228, 288, 413, 424, 736
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 1 cut(s) 395
Bso31I GGTCTC 1 cut(s) 228
Bsp143I GATC 2 cut(s) 31, 118
BspACI CCGC 4 cut(s) 127, 173, 178, 382
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 685
BspFNI CGCG 1 cut(s) 175
BspQI GCTCTTC 1 cut(s) 618
BspTNI GGTCTC 1 cut(s) 228
BsrBI CCGCTC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 780
BssMI GATC 2 cut(s) 31, 118
Bst4CI ACNGT 3 cut(s) 308, 408, 717
Bst6I CTCTTC 7 cut(s) 408, 618, 660, 673, 702, 747, 774
BstC8I GCNNGC 2 cut(s) 131, 471
BstDEI CTNAG 1 cut(s) 672
BstF5I GGATG 1 cut(s) 544
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 34, 121
BstMAI GTCTC 5 cut(s) 228, 288, 413, 424, 736
BstMBI GATC 2 cut(s) 31, 118
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 2 cut(s) 10, 273
BstNSI RCATGY 1 cut(s) 797
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 5 cut(s) 285, 328, 397, 559, 745
BsuRI GGCC 1 cut(s) 395
BtsCI GGATG 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 131, 471
CfoI GCGC 1 cut(s) 177
CseI GACGC 1 cut(s) 219
Csp6I GTAC 1 cut(s) 94
CviAII CATG 1 cut(s) 794
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 672
DpnI GATC 2 cut(s) 33, 120
DpnII GATC 2 cut(s) 31, 118
DrdI GACNNNNNNGTC 1 cut(s) 216
DseDI GACNNNNNNGTC 1 cut(s) 216
Eam1104I CTCTTC 7 cut(s) 408, 618, 660, 673, 702, 747, 774
EarI CTCTTC 7 cut(s) 408, 618, 660, 673, 702, 747, 774
Eco31I GGTCTC 1 cut(s) 228
Eco57I CTGAAG 2 cut(s) 459, 680
FaeI CATG 1 cut(s) 797
FaiI YATR 3 cut(s) 255, 509, 795
FalI AAGNNNNNCTT 6 cut(s) 262, 294, 561, 593, 670, 702
FaqI GGGAC 1 cut(s) 81
FatI CATG 1 cut(s) 793
FauI CCCGC 1 cut(s) 180
Fnu4HI GCNGC 8 cut(s) 127, 178, 274, 342, 383, 386, 573, 759
FokI GGATG 1 cut(s) 551
Fsp4HI GCNGC 8 cut(s) 127, 178, 274, 342, 383, 386, 573, 759
GlaI GCGC 1 cut(s) 176
GluI GCNGC 8 cut(s) 127, 178, 274, 342, 383, 386, 573, 759
GsuI CTGGAG 2 cut(s) 130, 662
HaeIII GGCC 1 cut(s) 395
HapII CCGG 2 cut(s) 112, 652
HgaI GACGC 1 cut(s) 219
HhaI GCGC 1 cut(s) 177
Hin1II CATG 1 cut(s) 797
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 684
HinfI GANTC 4 cut(s) 187, 217, 445, 736
HpaII CCGG 2 cut(s) 112, 652
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 9 cut(s) 36, 228, 450, 478, 612, 675, 699, 741, 804
Hpy188III TCNNGA 4 cut(s) 147, 355, 521, 722
Hpy8I GTNNAC 1 cut(s) 311
Hpy99I CGWCG 2 cut(s) 94, 213
HpyAV CCTTC 1 cut(s) 509
HpyCH4III ACNGT 3 cut(s) 308, 408, 717
HpyCH4V TGCA 2 cut(s) 425, 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 273
HpyF3I CTNAG 1 cut(s) 672
Hsp92II CATG 1 cut(s) 797
HspAI GCGC 1 cut(s) 175
Kzo9I GATC 2 cut(s) 31, 118
LguI GCTCTTC 1 cut(s) 618
LmnI GCTCC 2 cut(s) 72, 730
Lsp1109I GCAGC 5 cut(s) 285, 328, 397, 559, 745
LweI GCATC 1 cut(s) 627
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 33, 120
MbiI CCGCTC 1 cut(s) 129
MboI GATC 2 cut(s) 31, 118
MluCI AATT 1 cut(s) 527
MlyI GAGTC 2 cut(s) 196, 226
MmeI TCCRAC 3 cut(s) 251, 390, 708
MroXI GAANNNNTTC 2 cut(s) 157, 444
MseI TTAA 3 cut(s) 243, 543, 859
MspI CCGG 2 cut(s) 112, 652
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 10, 273
NdeII GATC 2 cut(s) 31, 118
NlaIII CATG 1 cut(s) 797
NspI RCATGY 1 cut(s) 797
PciSI GCTCTTC 1 cut(s) 618
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PdmI GAANNNNTTC 2 cut(s) 157, 444
PfeI GAWTC 2 cut(s) 445, 736
PkrI GCNGC 8 cut(s) 128, 179, 275, 343, 384, 387, 574, 760
PleI GAGTC 2 cut(s) 195, 225
PpsI GAGTC 2 cut(s) 195, 225
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SapI GCTCTTC 1 cut(s) 618
SaqAI TTAA 3 cut(s) 243, 543, 859
SatI GCNGC 8 cut(s) 127, 178, 274, 342, 383, 386, 573, 759
Sau3AI GATC 2 cut(s) 31, 118
SchI GAGTC 2 cut(s) 196, 226
SfaNI GCATC 1 cut(s) 627
SmlI CTYRAG 2 cut(s) 353, 434
SmoI CTYRAG 2 cut(s) 353, 434
Sse9I AATT 1 cut(s) 527
SsiI CCGC 4 cut(s) 127, 173, 178, 382
TaaI ACNGT 3 cut(s) 308, 408, 717
TaqI TCGA 5 cut(s) 80, 106, 121, 161, 721
TaqII GACCGA 3 cut(s) 180, 210, 822
TasI AATT 1 cut(s) 527
TauI GCSGC 3 cut(s) 129, 180, 385
TfiI GAWTC 2 cut(s) 445, 736
Tru1I TTAA 3 cut(s) 243, 543, 859
Tru9I TTAA 3 cut(s) 243, 543, 859
TseI GCWGC 5 cut(s) 273, 341, 385, 572, 758
TspDTI ATGAA 2 cut(s) 495, 821
TspGWI ACGGA 2 cut(s) 85, 607
XceI RCATGY 1 cut(s) 797
XmnI GAANNNNTTC 2 cut(s) 157, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.