Rw2G024250

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0009853
Physical Location & Seq
Reverse (-)
35794017 .. 35795381
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024250.1

Sequence Viewer

Length: 762 bp
ATGGGACGGAGCATATCAAAGTCGCCGTCGAGAGGAAGAAACCGTAGGGATCGAAGCCGCTCACCATATTCCTCCAGAAGGAACCGTTCTAGTGTCTCCCCCCGTCGCCGGAGAAGCCGGTCGCCGAGTTACAGGCGCCGTAAGAGCCGGTCTCCGACGCCGAGACGACGTCGCAGGCATAGAACTAAGAGCAGCTCTCCGTCTCCTCCTCCTCCTCCTCCTCCTCGTCTGACCACAACTGAACGGAAAAATGCCAAGAAAGAGGAGGAAGAAAAGGCCAGGCTACTACTGGAGGCGGAGCTGAAGAGGTTAGAGGAAGAGACTGCGCAGAGAATAGAGGAAGCGATTCGGAAAAATGTAGAGGAGAGGCTGAGTTCTGTTGATGTTAAGTTACAAGTAGAGAGGCGGATAGAGGAAGGTAGGAAGAAGCTGCTTGAGGATGTTCAAGCTCAACTTCAAAGAGAAAAGGAAGCTGCTCTTAATGAAGCAAGACAGAAACAAGAACAAGCTCGGAAAGAGAGAGAAGAGCTTGATAAGATGCTAGAGGAGAACAGGAGGAGGGTGGAAGAGGCTCAGAGAAGAGAAGCTTTGGAACTGCAGACCAAAGAGGAGGAACGCTATCGGGAGTTGGAGCTGATTCAGAGACAGAAAGAAGAGGCTGCAAGGAGAAAAAAGATGGAAGAGGAAGAAGAACATGCACGCCTGATGAAGTTGTCTAGTAAGAATAAATCTCGATCAAAGTCTTCTAGTATTGGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

253

Amino Acids

30.37

Weight (kDa)

10.85

Isoelectric Point (pI)

126.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 98 - 247 6e-34 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 172
Acc16I TGCGCA 1 cut(s) 327
AccB1I GGYRCC 1 cut(s) 135
AccBSI CCGCTC 1 cut(s) 60
AciI CCGC 3 cut(s) 58, 296, 406
AclWI GGATC 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 323
AcyI GRCGYC 3 cut(s) 136, 158, 169
AfiI CCNNNNNNNGG 3 cut(s) 32, 78, 108
AgsI TTSAA 2 cut(s) 446, 458
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 9 cut(s) 195, 301, 430, 449, 473, 509, 529, 587, 634
AluI AGCT 9 cut(s) 195, 301, 430, 449, 473, 509, 529, 587, 634
Alw26I GTCTC 6 cut(s) 100, 156, 157, 207, 314, 637
AlwI GGATC 1 cut(s) 57
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 4 cut(s) 192, 430, 473, 659
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 2 cut(s) 138, 328
AsuHPI GGTGA 1 cut(s) 54
BanI GGYRCC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 735
BbvI GCAGC 4 cut(s) 204, 417, 460, 646
BccI CCATC 1 cut(s) 670
BceAI ACGGC 2 cut(s) 10, 123
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 6 cut(s) 100, 156, 157, 207, 314, 637
BfaI CTAG 4 cut(s) 90, 542, 717, 747
BfmI CTRYAG 1 cut(s) 596
BfoI RGCGCY 1 cut(s) 139
BisI GCNGC 5 cut(s) 58, 193, 431, 474, 660
BlsI GCNGC 5 cut(s) 59, 194, 432, 475, 661
Bme1390I CCNGG 1 cut(s) 280
BmiI GGNNCC 2 cut(s) 83, 137
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 528
BpiI GAAGAC 1 cut(s) 735
BplI GAGNNNNNCTC 4 cut(s) 136, 168, 181, 213
BpmI CTGGAG 2 cut(s) 58, 311
BpuEI CTTGAG 1 cut(s) 455
BsaHI GRCGYC 3 cut(s) 136, 158, 169
BsaI GGTCTC 1 cut(s) 156
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 78, 108
Bse118I RCCGGY 2 cut(s) 117, 147
Bse1I ACTGG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 3 cut(s) 32, 78, 108
BseMII CTCAG 2 cut(s) 362, 587
BseNI ACTGG 1 cut(s) 294
BseXI GCAGC 4 cut(s) 204, 417, 460, 646
Bsh1285I CGRYCG 1 cut(s) 122
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 135
BsiEI CGRYCG 1 cut(s) 122
BsiSI CCGG 3 cut(s) 109, 118, 148
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 32, 78, 108
BsmAI GTCTC 6 cut(s) 100, 156, 157, 207, 314, 637
BsmBI CGTCTC 2 cut(s) 157, 207
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 278
Bso31I GGTCTC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 49, 734
BspACI CCGC 3 cut(s) 58, 296, 406
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 2 cut(s) 363, 586
BspLI GGNNCC 2 cut(s) 83, 137
BspMAI CTGCAG 1 cut(s) 600
BspPI GGATC 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 519
BspT107I GGYRCC 1 cut(s) 135
BspTNI GGTCTC 1 cut(s) 156
BsrBI CCGCTC 1 cut(s) 60
BsrFI RCCGGY 2 cut(s) 117, 147
BsrI ACTGG 1 cut(s) 294
BssAI RCCGGY 2 cut(s) 117, 147
BssMI GATC 2 cut(s) 49, 734
BssNI GRCGYC 3 cut(s) 136, 158, 169
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 2 cut(s) 44, 86
Bst6I CTCTTC 7 cut(s) 299, 312, 519, 561, 574, 648, 675
BstACI GRCGYC 3 cut(s) 136, 158, 169
BstC8I GCNNGC 2 cut(s) 176, 700
BstDEI CTNAG 3 cut(s) 186, 371, 573
BstENI CCTNNNNNAGG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 445
BstH2I RGCGCY 1 cut(s) 139
BstHHI GCGC 2 cut(s) 138, 328
BstKTI GATC 2 cut(s) 52, 737
BstMAI GTCTC 6 cut(s) 100, 156, 157, 207, 314, 637
BstMBI GATC 2 cut(s) 49, 734
BstMCI CGRYCG 1 cut(s) 122
BstMWI GCNNNNNNNGC 2 cut(s) 114, 144
BstNI CCWGG 1 cut(s) 280
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 596
BstV1I GCAGC 4 cut(s) 204, 417, 460, 646
BstV2I GAAGAC 1 cut(s) 735
BsuRI GGCC 1 cut(s) 278
BtsCI GGATG 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 176, 700
CfoI GCGC 2 cut(s) 138, 328
Cfr10I RCCGGY 2 cut(s) 117, 147
CseI GACGC 1 cut(s) 166
CviAII CATG 1 cut(s) 695
DdeI CTNAG 3 cut(s) 186, 371, 573
DinI GGCGCC 1 cut(s) 137
DpnI GATC 2 cut(s) 51, 736
DpnII GATC 2 cut(s) 49, 734
Eam1104I CTCTTC 7 cut(s) 299, 312, 519, 561, 574, 648, 675
EarI CTCTTC 7 cut(s) 299, 312, 519, 561, 574, 648, 675
EciI GGCGGA 2 cut(s) 311, 421
Eco31I GGTCTC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 323
EcoNI CCTNNNNNAGG 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 278
EgeI GGCGCC 1 cut(s) 137
EheI GGCGCC 1 cut(s) 137
Esp3I CGTCTC 2 cut(s) 157, 207
FaeI CATG 1 cut(s) 698
FaiI YATR 4 cut(s) 14, 67, 180, 696
FalI AAGNNNNNCTT 6 cut(s) 438, 470, 462, 494, 571, 603
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 694
Fnu4HI GCNGC 5 cut(s) 58, 193, 431, 474, 660
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 5 cut(s) 58, 193, 431, 474, 660
FspBI CTAG 4 cut(s) 90, 542, 717, 747
FspI TGCGCA 1 cut(s) 327
GlaI GCGC 2 cut(s) 137, 327
GluI GCNGC 5 cut(s) 58, 193, 431, 474, 660
GsuI CTGGAG 2 cut(s) 58, 311
HaeII RGCGCY 1 cut(s) 139
HaeIII GGCC 1 cut(s) 278
HapII CCGG 3 cut(s) 109, 118, 148
HgaI GACGC 1 cut(s) 166
HhaI GCGC 2 cut(s) 138, 328
Hin1I GRCGYC 3 cut(s) 136, 158, 169
Hin1II CATG 1 cut(s) 698
Hin6I GCGC 2 cut(s) 136, 326
HinP1I GCGC 2 cut(s) 136, 326
HindIII AAGCTT 1 cut(s) 585
HinfI GANTC 2 cut(s) 346, 637
HpaII CCGG 3 cut(s) 109, 118, 148
HphI GGTGA 1 cut(s) 54
Hpy188I TCNGA 6 cut(s) 156, 231, 351, 513, 576, 642
Hpy188III TCNNGA 4 cut(s) 30, 75, 623, 732
Hpy99I CGWCG 5 cut(s) 31, 108, 160, 171, 174
HpyAV CCTTC 2 cut(s) 72, 410
HpyCH4III ACNGT 2 cut(s) 44, 86
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 598, 662, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 144
HpyF3I CTNAG 3 cut(s) 186, 371, 573
HpySE526I ACGT 1 cut(s) 169
Hsp92I GRCGYC 3 cut(s) 136, 158, 169
Hsp92II CATG 1 cut(s) 698
HspAI GCGC 2 cut(s) 136, 326
KasI GGCGCC 1 cut(s) 135
Kzo9I GATC 2 cut(s) 49, 734
LguI GCTCTTC 1 cut(s) 519
LmnI GCTCC 3 cut(s) 9, 298, 631
Lsp1109I GCAGC 4 cut(s) 204, 417, 460, 646
LweI GCATC 1 cut(s) 528
MaeI CTAG 4 cut(s) 90, 542, 717, 747
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 128, 390
MalI GATC 2 cut(s) 51, 736
MbiI CCGCTC 1 cut(s) 60
MboI GATC 2 cut(s) 49, 734
Mly113I GGCGCC 1 cut(s) 136
MmeI TCCRAC 2 cut(s) 179, 609
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 2 cut(s) 387, 480
MspI CCGG 3 cut(s) 109, 118, 148
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 114, 144
NarI GGCGCC 1 cut(s) 136
NdeII GATC 2 cut(s) 49, 734
NlaIII CATG 1 cut(s) 698
NlaIV GGNNCC 2 cut(s) 83, 137
NmeAIII GCCGAG 2 cut(s) 150, 186
NsbI TGCGCA 1 cut(s) 327
NspI RCATGY 1 cut(s) 698
PciSI GCTCTTC 1 cut(s) 519
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 2 cut(s) 346, 637
PflFI GACNNNGTC 1 cut(s) 168
PkrI GCNGC 5 cut(s) 59, 194, 432, 475, 661
PluTI GGCGCC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 83, 137
PstI CTGCAG 1 cut(s) 600
PsyI GACNNNGTC 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 519
SaqAI TTAA 2 cut(s) 387, 480
SatI GCNGC 5 cut(s) 58, 193, 431, 474, 660
Sau3AI GATC 2 cut(s) 49, 734
ScrFI CCNGG 1 cut(s) 280
SfaNI GCATC 1 cut(s) 528
SfcI CTRYAG 1 cut(s) 596
SfoI GGCGCC 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
SsiI CCGC 3 cut(s) 58, 296, 406
SspDI GGCGCC 1 cut(s) 135
SspMI CTAG 4 cut(s) 90, 542, 717, 747
StyD4I CCNGG 1 cut(s) 278
TaaI ACNGT 2 cut(s) 44, 86
TaiI ACGT 1 cut(s) 172
TaqI TCGA 3 cut(s) 29, 52, 733
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 2 cut(s) 346, 637
Tru1I TTAA 2 cut(s) 387, 480
Tru9I TTAA 2 cut(s) 387, 480
TseI GCWGC 4 cut(s) 192, 430, 473, 659
TspDTI ATGAA 2 cut(s) 498, 722
TspGWI ACGGA 3 cut(s) 22, 189, 259
Tth111I GACNNNGTC 1 cut(s) 168
XagI CCTNNNNNAGG 1 cut(s) 76
XceI RCATGY 1 cut(s) 698
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 4 cut(s) 90, 542, 717, 747
ZraI GACGTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.