Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009853

Physical Location & Seq

Genomic Coordinates Reverse (-)

25358512 .. 25362886

Gene Structure 4375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0244200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCAAATAAGGGCACTTTTCTATTCTCATTGCAGAGAATTGGTATCCAAGATTATGAATTTCCTGCAACGAAGGTACTATGACTTGAAGGTTGGGAATGGAACTAAGGCAGTGACAGGATCCCGGGTTGCAGTTCATTATGTTGCAAAGTGGAAGGGTATCACTTTCATGACAAGTAGACAAGGACTTGGTGTTGGTGGAGGAATGTCATACGGATTTGATGTAGGCCAATCTGAGAAGGGATCAGTCCTCAAGGGGTTAGATATTGGTGTAAAAGGCATGCGGCGATTGCTTATAGTTCCTCCTGAGCTGGCATATGGAAGCAAAGGAGTCCAAGAAATCCCTCCAAATGCAACAATAGAGGGCATATTTTATTCCCCATGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

129

Amino Acids

14.22

Weight (kDa)

9.9

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	35 - 120	9.4e-14	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13340
fragaria_vesca	FvH4_1g25270 FvH4_1g25270 FvH4_1g25270
malus_domestica	MD15G1137800.v1.1
prunus_persica	Prupe.4G280500_v2.0.a1 Prupe.4G280500_v2.0.a1
pyrus_communis	pycom15g12410
rosa_chinensis	RchiOBHm_Chr2g0123211
rosa_laevigata	RLG00000018737
rosa_multiflora	Rmu_sc0005573.1_g000013 Rmu_sc0005810.1_g000005
rosa_roxburghii	Rroxscaffold_2G00120840
rosa_rugosa	Rorug02G0244200 Rorug02G0244200
rosa_samantha	Rh2AG303300 Rh2BG311200 Rh2CG289900 Rh2DG327300
rosa_wichuraiana	Rw2G024160 Rw2G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	178
AciI	CCGC	1 cut(s)	283
AclWI	GGATC	3 cut(s)	114, 127, 250
AcsI	RAATTY	1 cut(s)	58
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	2 cut(s)	310, 387
AluI	AGCT	2 cut(s)	310, 387
AlwI	GGATC	3 cut(s)	114, 127, 250
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	1 cut(s)	226
ApoI	RAATTY	1 cut(s)	58
AsuC2I	CCSGG	2 cut(s)	124, 125
AvaI	CYCGRG	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	16
BamHI	GGATCC	1 cut(s)	119
BciVI	GTATCC	1 cut(s)	55
BcnI	CCSGG	2 cut(s)	124, 125
BfuI	GTATCC	1 cut(s)	55
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	2 cut(s)	124, 125
BmeT110I	CYCGRG	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	124, 125
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	124, 125
BsaJI	CCNNGG	2 cut(s)	123, 380
Bse3DI	GCAATG	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	123, 380
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	225, 297
BseSI	GKGCMC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	124
BsnI	GGCC	1 cut(s)	228
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	119, 242
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	2 cut(s)	226, 298
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	3 cut(s)	114, 127, 250
BsrDI	GCAATG	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	123, 380
BssMI	GATC	2 cut(s)	119, 242
BssT1I	CCWWGG	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	281, 312
BstDEI	CTNAG	3 cut(s)	105, 234, 306
BstDSI	CCRYGG	1 cut(s)	380
BstKTI	GATC	2 cut(s)	122, 245
BstMBI	GATC	2 cut(s)	119, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	122, 123
BstSLI	GKGCMC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	380
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	281, 312
CciI	TCATGA	1 cut(s)	168
Cfr9I	CCCGGG	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	3 cut(s)	169, 280, 381
CviJI	RGCY	3 cut(s)	228, 310, 387
CviKI_1	RGCY	3 cut(s)	228, 310, 387
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	3 cut(s)	105, 234, 306
DpnI	GATC	2 cut(s)	121, 244
DpnII	GATC	2 cut(s)	119, 242
Eco130I	CCWWGG	1 cut(s)	380
Eco88I	CYCGRG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	3 cut(s)	172, 283, 384
FatI	CATG	3 cut(s)	168, 279, 380
FauNDI	CATATG	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	284
GluI	GCNGC	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	124
Hin1II	CATG	3 cut(s)	172, 283, 384
HinfI	GANTC	1 cut(s)	330
HpaII	CCGG	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	2 cut(s)	169, 305
Hpy8I	GTNNAC	1 cut(s)	179
HpyAV	CCTTC	4 cut(s)	66, 82, 148, 232
HpyCH4V	TGCA	6 cut(s)	4, 33, 67, 131, 146, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	3 cut(s)	105, 234, 306
Hsp92II	CATG	3 cut(s)	172, 283, 384
Kzo9I	GATC	2 cut(s)	119, 242
LmnI	GCTCC	1 cut(s)	384
LpnPI	CCDG	5 cut(s)	77, 102, 137, 296, 318
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	2 cut(s)	121, 244
MboI	GATC	2 cut(s)	119, 242
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	2 cut(s)	38, 58
MlyI	GAGTC	1 cut(s)	339
MnlI	CCTC	5 cut(s)	194, 260, 312, 354, 355
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	2 cut(s)	124, 125
MwoI	GCNNNNNNNGC	1 cut(s)	289
NciI	CCSGG	2 cut(s)	124, 125
NcoI	CCATGG	1 cut(s)	380
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	2 cut(s)	119, 242
NlaIII	CATG	3 cut(s)	172, 283, 384
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	283
PagI	TCATGA	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PspN4I	GGNNCC	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	119
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	167
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	2 cut(s)	119, 242
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	2 cut(s)	124, 125
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	4 cut(s)	77, 93, 312, 389
SmaI	CCCGGG	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SphI	GCATGC	1 cut(s)	283
Sse9I	AATT	2 cut(s)	38, 58
SsiI	CCGC	1 cut(s)	283
StyD4I	CCNGG	2 cut(s)	122, 123
StyI	CCWWGG	1 cut(s)	380
TasI	AATT	2 cut(s)	38, 58
TauI	GCSGC	1 cut(s)	286
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	3 cut(s)	71, 125, 157
TspGWI	ACGGA	1 cut(s)	228
TspMI	CCCGGG	1 cut(s)	123
TspRI	CASTG	1 cut(s)	117
XapI	RAATTY	1 cut(s)	58
XceI	RCATGY	1 cut(s)	283
XmaI	CCCGGG	1 cut(s)	123
XmiI	GTMKAC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.