Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005573.1

Orthogroup ID

OG0009853

Physical Location & Seq

Genomic Coordinates Reverse (-)

88886 .. 90253

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005573.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgggacggagcatatcaaagtcgccgtcgagaggaagaaaccgtagggatcgaagccgctcaccatattcctccagaaggaaccgttctagtgtctccccgcgtcgccggagaagccggtcgccgagttacaggcgccgtaagagccggtctccgacgccgagacgacgtcgcaggcatagaactaagagcagctctccgtctcctcctcctcctcctcctcctcctcgtctgaccacaactgaacggaaaaatgccaagaaagaggaggaagaaaaggccaggctactactggaggcggagctgaagaggttagaggaagagactgcgcagagaatagaggaagcgattcggaaaaatgtagaggagaggctgagttctgatgatgttaagttacaagtagagaggcggatagaggaaggtaggaagaagctgcttgaggatgttcaagctcaacttcaaagagaaaaggaagctgctcttaatgaagcaagacagaaacaagaacaagctcggaaagagagagaagagcttgataagatgctagaggagaacaggaggagggtggaagaggctcagagaagagaagctttggaactgcagaccaaagaggaggaacgctatcgggagttggagctgattcagagacagaaagaagaggctgcaaggagaaaaaagatggaagaggaagaagaacatgcacgcctgatgaagttgtctagtaagaataaatctcgatcaaagtcttctagtattggtttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARGLU

Protein Analysis

254

Amino Acids

30.48

Weight (kDa)

10.78

Isoelectric Point (pI)

127.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13340
fragaria_vesca	FvH4_1g25270 FvH4_1g25270 FvH4_1g25270
malus_domestica	MD15G1137800.v1.1
prunus_persica	Prupe.4G280500_v2.0.a1 Prupe.4G280500_v2.0.a1
pyrus_communis	pycom15g12410
rosa_chinensis	RchiOBHm_Chr2g0123211
rosa_laevigata	RLG00000018737
rosa_multiflora	Rmu_sc0005573.1_g000013 Rmu_sc0005810.1_g000005
rosa_roxburghii	Rroxscaffold_2G00120840
rosa_rugosa	Rorug02G0244200 Rorug02G0244200
rosa_samantha	Rh2AG303300 Rh2BG311200 Rh2CG289900 Rh2DG327300
rosa_wichuraiana	Rw2G024160 Rw2G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	172
Acc16I	TGCGCA	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	135
AccBSI	CCGCTC	1 cut(s)	60
AccII	CGCG	1 cut(s)	103
AciI	CCGC	4 cut(s)	58, 101, 299, 409
AclWI	GGATC	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	3 cut(s)	136, 158, 169
AfiI	CCNNNNNNNGG	2 cut(s)	32, 78
AgsI	TTSAA	2 cut(s)	449, 461
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	9 cut(s)	195, 304, 433, 452, 476, 512, 532, 590, 637
AluI	AGCT	9 cut(s)	195, 304, 433, 452, 476, 512, 532, 590, 637
Alw26I	GTCTC	6 cut(s)	100, 156, 157, 207, 317, 640
AlwI	GGATC	1 cut(s)	57
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	4 cut(s)	192, 433, 476, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	2 cut(s)	138, 331
AsuHPI	GGTGA	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	738
BbvI	GCAGC	4 cut(s)	204, 420, 463, 649
BccI	CCATC	1 cut(s)	673
BceAI	ACGGC	2 cut(s)	10, 123
BciT130I	CCWGG	1 cut(s)	283
BcoDI	GTCTC	6 cut(s)	100, 156, 157, 207, 317, 640
BfaI	CTAG	4 cut(s)	90, 545, 720, 750
BfmI	CTRYAG	1 cut(s)	599
BfoI	RGCGCY	1 cut(s)	139
BisI	GCNGC	5 cut(s)	58, 193, 434, 477, 663
BlsI	GCNGC	5 cut(s)	59, 194, 435, 478, 664
Bme1390I	CCNGG	1 cut(s)	283
BmiI	GGNNCC	2 cut(s)	83, 137
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	738
BplI	GAGNNNNNCTC	4 cut(s)	136, 168, 181, 213
BpmI	CTGGAG	2 cut(s)	58, 314
BpuEI	CTTGAG	1 cut(s)	458
BsaHI	GRCGYC	3 cut(s)	136, 158, 169
BsaI	GGTCTC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 78
Bse118I	RCCGGY	2 cut(s)	117, 147
Bse1I	ACTGG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	283
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	2 cut(s)	32, 78
BseMII	CTCAG	2 cut(s)	365, 590
BseNI	ACTGG	1 cut(s)	297
BseXI	GCAGC	4 cut(s)	204, 420, 463, 649
Bsh1236I	CGCG	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	135
BsiEI	CGRYCG	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	109, 118, 148
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	32, 78
BsmAI	GTCTC	6 cut(s)	100, 156, 157, 207, 317, 640
BsmBI	CGTCTC	2 cut(s)	157, 207
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	49, 737
BspACI	CCGC	4 cut(s)	58, 101, 299, 409
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	2 cut(s)	366, 589
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	83, 137
BspMAI	CTGCAG	1 cut(s)	603
BspPI	GGATC	1 cut(s)	57
BspQI	GCTCTTC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	60
BsrFI	RCCGGY	2 cut(s)	117, 147
BsrI	ACTGG	1 cut(s)	297
BssAI	RCCGGY	2 cut(s)	117, 147
BssMI	GATC	2 cut(s)	49, 737
BssNI	GRCGYC	3 cut(s)	136, 158, 169
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	44, 86
Bst6I	CTCTTC	7 cut(s)	302, 315, 522, 564, 577, 651, 678
BstACI	GRCGYC	3 cut(s)	136, 158, 169
BstC8I	GCNNGC	2 cut(s)	176, 703
BstDEI	CTNAG	3 cut(s)	186, 374, 576
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	448
BstFNI	CGCG	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	2 cut(s)	138, 331
BstKTI	GATC	2 cut(s)	52, 740
BstMAI	GTCTC	6 cut(s)	100, 156, 157, 207, 317, 640
BstMBI	GATC	2 cut(s)	49, 737
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 144
BstNI	CCWGG	1 cut(s)	283
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	599
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	4 cut(s)	204, 420, 463, 649
BstV2I	GAAGAC	1 cut(s)	738
BsuRI	GGCC	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	448
Cac8I	GCNNGC	2 cut(s)	176, 703
CfoI	GCGC	2 cut(s)	138, 331
Cfr10I	RCCGGY	2 cut(s)	117, 147
CseI	GACGC	2 cut(s)	92, 166
CviAII	CATG	1 cut(s)	698
DdeI	CTNAG	3 cut(s)	186, 374, 576
DinI	GGCGCC	1 cut(s)	137
DpnI	GATC	2 cut(s)	51, 739
DpnII	GATC	2 cut(s)	49, 737
Eam1104I	CTCTTC	7 cut(s)	302, 315, 522, 564, 577, 651, 678
EarI	CTCTTC	7 cut(s)	302, 315, 522, 564, 577, 651, 678
EciI	GGCGGA	2 cut(s)	314, 424
Eco31I	GGTCTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	326
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	281
EgeI	GGCGCC	1 cut(s)	137
EheI	GGCGCC	1 cut(s)	137
Esp3I	CGTCTC	2 cut(s)	157, 207
FaeI	CATG	1 cut(s)	701
FaiI	YATR	4 cut(s)	14, 67, 180, 699
FalI	AAGNNNNNCTT	6 cut(s)	441, 473, 465, 497, 574, 606
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	697
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	5 cut(s)	58, 193, 434, 477, 663
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	5 cut(s)	58, 193, 434, 477, 663
FspBI	CTAG	4 cut(s)	90, 545, 720, 750
FspI	TGCGCA	1 cut(s)	330
GlaI	GCGC	2 cut(s)	137, 330
GluI	GCNGC	5 cut(s)	58, 193, 434, 477, 663
GsuI	CTGGAG	2 cut(s)	58, 314
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	3 cut(s)	109, 118, 148
HgaI	GACGC	2 cut(s)	92, 166
HhaI	GCGC	2 cut(s)	138, 331
Hin1I	GRCGYC	3 cut(s)	136, 158, 169
Hin1II	CATG	1 cut(s)	701
Hin6I	GCGC	2 cut(s)	136, 329
HinP1I	GCGC	2 cut(s)	136, 329
HindIII	AAGCTT	1 cut(s)	588
HinfI	GANTC	2 cut(s)	349, 640
HpaII	CCGG	3 cut(s)	109, 118, 148
HphI	GGTGA	1 cut(s)	54
Hpy188I	TCNGA	7 cut(s)	156, 234, 354, 382, 516, 579, 645
Hpy188III	TCNNGA	4 cut(s)	30, 75, 626, 735
Hpy99I	CGWCG	5 cut(s)	31, 108, 160, 171, 174
HpyAV	CCTTC	2 cut(s)	72, 413
HpyCH4III	ACNGT	2 cut(s)	44, 86
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	3 cut(s)	601, 665, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 144
HpyF3I	CTNAG	3 cut(s)	186, 374, 576
HpySE526I	ACGT	1 cut(s)	169
Hsp92I	GRCGYC	3 cut(s)	136, 158, 169
Hsp92II	CATG	1 cut(s)	701
HspAI	GCGC	2 cut(s)	136, 329
KasI	GGCGCC	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	49, 737
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	3 cut(s)	9, 301, 634
Lsp1109I	GCAGC	4 cut(s)	204, 420, 463, 649
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	4 cut(s)	90, 545, 720, 750
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	2 cut(s)	128, 393
MalI	GATC	2 cut(s)	51, 739
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	2 cut(s)	49, 737
Mly113I	GGCGCC	1 cut(s)	136
MmeI	TCCRAC	2 cut(s)	179, 612
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	2 cut(s)	390, 483
MspI	CCGG	3 cut(s)	109, 118, 148
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	114, 144
NarI	GGCGCC	1 cut(s)	136
NdeII	GATC	2 cut(s)	49, 737
NlaIII	CATG	1 cut(s)	701
NlaIV	GGNNCC	2 cut(s)	83, 137
NmeAIII	GCCGAG	2 cut(s)	150, 186
NsbI	TGCGCA	1 cut(s)	330
NspI	RCATGY	1 cut(s)	701
PciSI	GCTCTTC	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	349, 640
PflFI	GACNNNGTC	1 cut(s)	168
PkrI	GCNGC	5 cut(s)	59, 194, 435, 478, 664
PluTI	GGCGCC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	83, 137
PstI	CTGCAG	1 cut(s)	603
PsyI	GACNNNGTC	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	390, 483
SatI	GCNGC	5 cut(s)	58, 193, 434, 477, 663
Sau3AI	GATC	2 cut(s)	49, 737
ScrFI	CCNGG	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	531
SfcI	CTRYAG	1 cut(s)	599
SfoI	GGCGCC	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SsiI	CCGC	4 cut(s)	58, 101, 299, 409
SspDI	GGCGCC	1 cut(s)	135
SspMI	CTAG	4 cut(s)	90, 545, 720, 750
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	44, 86
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	29, 52, 736
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	349, 640
Tru1I	TTAA	2 cut(s)	390, 483
Tru9I	TTAA	2 cut(s)	390, 483
TseI	GCWGC	4 cut(s)	192, 433, 476, 662
TspDTI	ATGAA	2 cut(s)	501, 725
TspGWI	ACGGA	3 cut(s)	22, 189, 262
Tth111I	GACNNNGTC	1 cut(s)	168
XagI	CCTNNNNNAGG	1 cut(s)	76
XceI	RCATGY	1 cut(s)	701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	4 cut(s)	90, 545, 720, 750
ZraI	GACGTC	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.