AT5G13830

methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011170
Physical Location & Seq
Forward (+)
4467311 .. 4468487
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13830.1

Sequence Viewer

Length: 675 bp
ATGAGTGGGGCAGGTGTACCGGACTTTTTCTACAGAGAAGCTCAACGTCTTGGCTATGTTGCTCGCTCAGCTTTCAAGCTTCTACAGATTCAAAAACAGTACAAGCTCATCAAACCAGGCTCCTCTGTTCTTGACCTAGGTTGCGCGCCTGGTGCTTGGCTTCAGGTTGCTTGCCAAAGCTTAGGCCCACTTAGAAGTGGTGGAATTGTCGTTGGTATGGATATAAAGAAGGTGAAGGTTCCTCCACAGTGTGATTCTCGAGTGCAAACCATTGCTGCTGATGTTTTAAACTTTCCCAGACAAAAGATTCGGGAGTTATCACCTCAGCAATTGGGATTTTCAGTCATTCTTTCAGATATGTGTCACTCAGTATCTGGAATAACCACTAGAGATGCAGCTCTGTCTGCTGAATTGGGAATGCGAGCACTTGATTTGGCTGTTGGTCAAGCTGCCATCTCTCAGTCACCTAATGATGATGATGGAGGCCCAAACGAAAGTCGTCCTGGTGTACTTAGGCATGGTGGCCATCTTGTGATCAAGCTTCTAGAAAGCGAGGATGCTCAAGATTTTGCTCGAATTTGCAAGCCTATCTTCAACAAGGCATCTTGGTTGAGGCCAAAAGCTACAAGACCATCATCTCGAGAAATTTACTTGATTTGCCAGGGATTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FtsJ

Protein Analysis

224

Amino Acids

24.33

Weight (kDa)

9.34

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FtsJ PF01728 19 - 223 3.5e-39 FtsJ-like methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13830
fragaria_vesca FvH4_7g22770
malus_domestica MD07G1200600.v1.1
prunus_persica Prupe.2G237400_v2.0.a1
pyrus_communis pycom01g15670 pycom07g18760 pycom07g18770
rosa_chinensis RchiOBHm_Chr1g0367871
rosa_laevigata RLG00000027260
rosa_multiflora Rmu_co8050104.1_g000001 Rmu_sc0010008.1_g000001 Rmu_ssc0000395.1_g000039
rosa_roxburghii Rroxscaffold_4G00289170
rosa_rugosa Rorug01G0337300 Rorug01G0337400
rosa_samantha Rh1AG344200 Rh1BG306200 Rh1CG321800 Rh1DG338400
rosa_wichuraiana Rw1G030640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2
Acc36I ACCTGC 1 cut(s) 2
AccII CGCG 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 523
AcsI RAATTY 2 cut(s) 576, 645
AcuI CTGAAG 1 cut(s) 146
AdeI CACNNNGTG 1 cut(s) 251
AfaI GTAC 3 cut(s) 18, 101, 510
AgsI TTSAA 3 cut(s) 76, 92, 595
AjnI CCWGG 4 cut(s) 115, 148, 502, 660
AluBI AGCT 9 cut(s) 41, 71, 79, 106, 180, 398, 449, 541, 623
AluI AGCT 9 cut(s) 41, 71, 79, 106, 180, 398, 449, 541, 623
Alw21I GWGCWC 1 cut(s) 427
AlwNI CAGNNNCTG 1 cut(s) 374
Ama87I CYCGRG 2 cut(s) 258, 639
AoxI GGCC 4 cut(s) 184, 484, 523, 614
ApeKI GCWGC 3 cut(s) 275, 395, 449
ApoI RAATTY 2 cut(s) 576, 645
ArsI GACNNNNNNTTYG 2 cut(s) 291, 323
AspA2I CCTAGG 1 cut(s) 136
AspLEI GCGC 2 cut(s) 146, 148
AspS9I GGNCC 2 cut(s) 185, 485
AsuHPI GGTGA 3 cut(s) 244, 312, 456
AvaI CYCGRG 2 cut(s) 258, 639
AvrII CCTAGG 1 cut(s) 136
BalI TGGCCA 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 427
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 3 cut(s) 262, 407, 436
BccI CCATC 4 cut(s) 461, 473, 534, 640
BciT130I CCWGG 4 cut(s) 117, 150, 504, 662
BclI TGATCA 1 cut(s) 534
BfaI CTAG 3 cut(s) 137, 387, 545
BfmI CTRYAG 2 cut(s) 31, 83
BfuAI ACCTGC 1 cut(s) 2
BisI GCNGC 3 cut(s) 276, 396, 450
BlnI CCTAGG 1 cut(s) 136
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 3 cut(s) 277, 397, 451
Bme1390I CCNGG 4 cut(s) 117, 150, 504, 662
BmeT110I CYCGRG 2 cut(s) 258, 639
BmgT120I GGNCC 2 cut(s) 185, 485
BmiI GGNNCC 2 cut(s) 121, 240
BmrFI CCNGG 4 cut(s) 117, 150, 504, 662
BmsI GCATC 3 cut(s) 382, 547, 611
Bpu10I CCTNAGC 2 cut(s) 181, 324
Bpu1102I GCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 546
BsaJI CCNNGG 2 cut(s) 136, 661
BsaWI WCCGGW 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 4 cut(s) 117, 150, 504, 662
BseDI CCNNGG 2 cut(s) 136, 661
BseGI GGATG 1 cut(s) 562
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 4 cut(s) 81, 338, 381, 473
BsePI GCGCGC 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 112
BseXI GCAGC 3 cut(s) 262, 407, 436
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 4 cut(s) 186, 486, 525, 616
BsiHKAI GWGCWC 1 cut(s) 427
BsiHKCI CYCGRG 2 cut(s) 258, 639
BsiSI CCGG 1 cut(s) 20
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 4 cut(s) 186, 486, 525, 616
BsoBI CYCGRG 2 cut(s) 258, 639
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 1 cut(s) 534
Bsp1720I GCTNAGC 1 cut(s) 67
BspANI GGCC 4 cut(s) 186, 486, 525, 616
BspCNI CTCAG 4 cut(s) 80, 337, 380, 472
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 121, 240
BspMI ACCTGC 1 cut(s) 2
BsrDI GCAATG 1 cut(s) 270
BssECI CCNNGG 2 cut(s) 136, 661
BssHII GCGCGC 1 cut(s) 144
BssMI GATC 1 cut(s) 534
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 4 cut(s) 117, 150, 504, 662
Bst4CI ACNGT 2 cut(s) 99, 249
BstC8I GCNNGC 5 cut(s) 64, 146, 172, 423, 584
BstDEI CTNAG 7 cut(s) 67, 181, 191, 324, 367, 459, 512
BstF5I GGATG 1 cut(s) 562
BstFNI CGCG 1 cut(s) 146
BstHHI GCGC 2 cut(s) 146, 148
BstKTI GATC 1 cut(s) 537
BstMBI GATC 1 cut(s) 534
BstMWI GCNNNNNNNGC 3 cut(s) 68, 152, 404
BstNI CCWGG 4 cut(s) 117, 150, 504, 662
BstSCI CCNGG 4 cut(s) 115, 148, 502, 660
BstSFI CTRYAG 2 cut(s) 31, 83
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 3 cut(s) 262, 407, 436
BsuRI GGCC 4 cut(s) 186, 486, 525, 616
BtsCI GGATG 1 cut(s) 562
BtsIMutI CAGTG 1 cut(s) 254
BveI ACCTGC 1 cut(s) 2
Cac8I GCNNGC 5 cut(s) 64, 146, 172, 423, 584
CaiI CAGNNNCTG 1 cut(s) 374
CfoI GCGC 2 cut(s) 146, 148
Cfr13I GGNCC 2 cut(s) 185, 485
Csp6I GTAC 3 cut(s) 17, 100, 509
CviAII CATG 1 cut(s) 518
CviQI GTAC 3 cut(s) 17, 100, 509
DdeI CTNAG 7 cut(s) 67, 181, 191, 324, 367, 459, 512
DpnI GATC 1 cut(s) 536
DpnII GATC 1 cut(s) 534
DraI TTTAAA 1 cut(s) 288
DraIII CACNNNGTG 1 cut(s) 251
EaeI YGGCCR 1 cut(s) 523
Eco130I CCWWGG 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 146
Eco88I CYCGRG 2 cut(s) 258, 639
EcoRII CCWGG 4 cut(s) 115, 148, 502, 660
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 521
FaiI YATR 5 cut(s) 57, 218, 224, 359, 519
FalI AAGNNNNNCTT 2 cut(s) 575, 607
FatI CATG 1 cut(s) 517
FbaI TGATCA 1 cut(s) 534
Fnu4HI GCNGC 3 cut(s) 276, 396, 450
FokI GGATG 1 cut(s) 569
Fsp4HI GCNGC 3 cut(s) 276, 396, 450
FspBI CTAG 3 cut(s) 137, 387, 545
GlaI GCGC 2 cut(s) 145, 147
GluI GCNGC 3 cut(s) 276, 396, 450
HaeIII GGCC 4 cut(s) 186, 486, 525, 616
HapII CCGG 1 cut(s) 20
HhaI GCGC 2 cut(s) 146, 148
Hin1II CATG 1 cut(s) 521
Hin6I GCGC 2 cut(s) 144, 146
HinP1I GCGC 2 cut(s) 144, 146
HindIII AAGCTT 3 cut(s) 77, 178, 539
HinfI GANTC 3 cut(s) 88, 254, 307
HpaII CCGG 1 cut(s) 20
HphI GGTGA 3 cut(s) 244, 312, 456
Hpy166II GTNNAC 2 cut(s) 17, 509
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 8 cut(s) 131, 258, 311, 375, 545, 563, 639, 641
Hpy8I GTNNAC 2 cut(s) 17, 509
HpyAV CCTTC 2 cut(s) 223, 229
HpyCH4III ACNGT 2 cut(s) 99, 249
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 3 cut(s) 265, 395, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 152, 404
HpyF3I CTNAG 7 cut(s) 67, 181, 191, 324, 367, 459, 512
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 1 cut(s) 521
HspAI GCGC 2 cut(s) 144, 146
Ksp22I TGATCA 1 cut(s) 534
Kzo9I GATC 1 cut(s) 534
LmnI GCTCC 1 cut(s) 125
Lsp1109I GCAGC 3 cut(s) 262, 407, 436
LweI GCATC 3 cut(s) 382, 547, 611
MaeI CTAG 3 cut(s) 137, 387, 545
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 362, 462
MalI GATC 1 cut(s) 536
MboI GATC 1 cut(s) 534
MboII GAAGA 1 cut(s) 583
MfeI CAATTG 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 427
MlsI TGGCCA 1 cut(s) 525
MluCI AATT 5 cut(s) 204, 329, 410, 576, 645
MluNI TGGCCA 1 cut(s) 525
MnlI CCTC 6 cut(s) 133, 252, 333, 476, 547, 606
Mox20I TGGCCA 1 cut(s) 525
MscI TGGCCA 1 cut(s) 525
MseI TTAA 1 cut(s) 287
Msp20I TGGCCA 1 cut(s) 525
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 4 cut(s) 117, 150, 504, 662
MunI CAATTG 1 cut(s) 329
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 4 cut(s) 117, 150, 504, 662
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 68, 152, 404
NdeII GATC 1 cut(s) 534
NlaIII CATG 1 cut(s) 521
NlaIV GGNNCC 2 cut(s) 121, 240
NmuCI GTSAC 2 cut(s) 362, 462
PaeR7I CTCGAG 2 cut(s) 258, 639
PaqCI CACCTGC 1 cut(s) 2
PauI GCGCGC 1 cut(s) 144
PctI GAATGC 1 cut(s) 423
PfeI GAWTC 3 cut(s) 88, 254, 307
PkrI GCNGC 3 cut(s) 277, 397, 451
Psp6I CCWGG 4 cut(s) 115, 148, 502, 660
PspGI CCWGG 4 cut(s) 115, 148, 502, 660
PspN4I GGNNCC 2 cut(s) 121, 240
PspPI GGNCC 2 cut(s) 185, 485
PstNI CAGNNNCTG 1 cut(s) 374
PteI GCGCGC 1 cut(s) 144
RsaI GTAC 3 cut(s) 18, 101, 510
RsaNI GTAC 3 cut(s) 17, 100, 509
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 3 cut(s) 276, 396, 450
Sau3AI GATC 1 cut(s) 534
Sau96I GGNCC 2 cut(s) 185, 485
ScrFI CCNGG 4 cut(s) 117, 150, 504, 662
SduI GDGCHC 1 cut(s) 427
SfaNI GCATC 3 cut(s) 382, 547, 611
SfcI CTRYAG 2 cut(s) 31, 83
Sfr274I CTCGAG 2 cut(s) 258, 639
SlaI CTCGAG 2 cut(s) 258, 639
SmlI CTYRAG 3 cut(s) 258, 561, 639
SmoI CTYRAG 3 cut(s) 258, 561, 639
Sse9I AATT 5 cut(s) 204, 329, 410, 576, 645
SspMI CTAG 3 cut(s) 137, 387, 545
StyD4I CCNGG 4 cut(s) 115, 148, 502, 660
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 99, 249
TaiI ACGT 1 cut(s) 49
TaqI TCGA 4 cut(s) 259, 574, 640, 670
TasI AATT 5 cut(s) 204, 329, 410, 576, 645
TatI WGTACW 2 cut(s) 99, 508
TfiI GAWTC 3 cut(s) 88, 254, 307
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 1 cut(s) 254
TseFI GTSAC 2 cut(s) 362, 462
TseI GCWGC 3 cut(s) 275, 395, 449
Tsp45I GTSAC 2 cut(s) 362, 462
TspRI CASTG 1 cut(s) 254
XapI RAATTY 2 cut(s) 576, 645
XbaI TCTAGA 1 cut(s) 544
XhoI CTCGAG 2 cut(s) 258, 639
XmaJI CCTAGG 1 cut(s) 136
XspI CTAG 3 cut(s) 137, 387, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.