Ribosomal RNA large subunit methyltransferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13830 |
| fragaria_vesca | FvH4_7g22770 |
| malus_domestica | MD07G1200600.v1.1 |
| prunus_persica | Prupe.2G237400_v2.0.a1 |
| pyrus_communis | pycom01g15670 pycom07g18760 pycom07g18770 |
| rosa_chinensis | RchiOBHm_Chr1g0367871 |
| rosa_laevigata | RLG00000027260 |
| rosa_multiflora | Rmu_co8050104.1_g000001 Rmu_sc0010008.1_g000001 Rmu_ssc0000395.1_g000039 |
| rosa_roxburghii | Rroxscaffold_4G00289170 |
| rosa_rugosa | Rorug01G0337300 Rorug01G0337400 |
| rosa_samantha | Rh1AG344200 Rh1BG306200 Rh1CG321800 Rh1DG338400 |
| rosa_wichuraiana | Rw1G030640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 181 |
| AciI | CCGC | 1 cut(s) | 69 |
| AclWI | GGATC | 1 cut(s) | 389 |
| AcsI | RAATTY | 2 cut(s) | 477, 590 |
| AcuI | CTGAAG | 2 cut(s) | 68, 146 |
| AfaI | GTAC | 1 cut(s) | 101 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 181, 312, 313 |
| AgsI | TTSAA | 4 cut(s) | 76, 269, 482, 587 |
| AjiI | CACGTC | 1 cut(s) | 286 |
| AjnI | CCWGG | 3 cut(s) | 48, 115, 148 |
| AluBI | AGCT | 9 cut(s) | 79, 106, 180, 245, 401, 452, 461, 565, 647 |
| AluI | AGCT | 9 cut(s) | 79, 106, 180, 245, 401, 452, 461, 565, 647 |
| Alw21I | GWGCWC | 1 cut(s) | 148 |
| AlwI | GGATC | 1 cut(s) | 389 |
| Ama87I | CYCGRG | 1 cut(s) | 410 |
| AoxI | GGCC | 2 cut(s) | 547, 638 |
| ApeKI | GCWGC | 3 cut(s) | 245, 398, 452 |
| ApoI | RAATTY | 2 cut(s) | 477, 590 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 294, 326 |
| AspS9I | GGNCC | 2 cut(s) | 133, 185 |
| AsuHPI | GGTGA | 1 cut(s) | 244 |
| AvaI | CYCGRG | 1 cut(s) | 410 |
| AvaII | GGWCC | 2 cut(s) | 133, 185 |
| Bbv12I | GWGCWC | 1 cut(s) | 148 |
| BbvI | GCAGC | 3 cut(s) | 232, 410, 439 |
| BccI | CCATC | 3 cut(s) | 494, 558, 664 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 387, 421 |
| BciT130I | CCWGG | 3 cut(s) | 50, 117, 150 |
| BfmI | CTRYAG | 2 cut(s) | 31, 692 |
| BisI | GCNGC | 3 cut(s) | 246, 399, 453 |
| BlsI | GCNGC | 3 cut(s) | 247, 400, 454 |
| Bme1390I | CCNGG | 3 cut(s) | 50, 117, 150 |
| Bme18I | GGWCC | 2 cut(s) | 133, 185 |
| BmeT110I | CYCGRG | 1 cut(s) | 410 |
| BmgBI | CACGTC | 1 cut(s) | 286 |
| BmgT120I | GGNCC | 2 cut(s) | 133, 185 |
| BmiI | GGNNCC | 3 cut(s) | 121, 186, 240 |
| BmrFI | CCNGG | 3 cut(s) | 50, 117, 150 |
| BmsI | GCATC | 2 cut(s) | 385, 635 |
| Bpu10I | CCTNAGC | 1 cut(s) | 457 |
| BpuEI | CTTGAG | 1 cut(s) | 209 |
| BsaJI | CCNNGG | 2 cut(s) | 49, 136 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 181, 312, 313 |
| Bse1I | ACTGG | 1 cut(s) | 435 |
| BseBI | CCWGG | 3 cut(s) | 50, 117, 150 |
| BseDI | CCNNGG | 2 cut(s) | 49, 136 |
| BseGI | GGATG | 2 cut(s) | 463, 586 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 181, 312, 313 |
| BseMII | CTCAG | 1 cut(s) | 369 |
| BseNI | ACTGG | 1 cut(s) | 435 |
| BseRI | GAGGAG | 2 cut(s) | 112, 558 |
| BseXI | GCAGC | 3 cut(s) | 232, 410, 439 |
| BshFI | GGCC | 2 cut(s) | 549, 640 |
| BsiHKAI | GWGCWC | 1 cut(s) | 148 |
| BsiHKCI | CYCGRG | 1 cut(s) | 410 |
| BsiSI | CCGG | 1 cut(s) | 598 |
| BslFI | GGGAC | 1 cut(s) | 351 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 181, 312, 313 |
| BsmFI | GGGAC | 1 cut(s) | 351 |
| BsnI | GGCC | 2 cut(s) | 549, 640 |
| BsoBI | CYCGRG | 1 cut(s) | 410 |
| Bsp1286I | GDGCHC | 1 cut(s) | 148 |
| Bsp143I | GATC | 2 cut(s) | 220, 381 |
| BspACI | CCGC | 1 cut(s) | 69 |
| BspANI | GGCC | 2 cut(s) | 549, 640 |
| BspCNI | CTCAG | 1 cut(s) | 368 |
| BspLI | GGNNCC | 3 cut(s) | 121, 186, 240 |
| BspMAI | CTGCAG | 1 cut(s) | 696 |
| BspPI | GGATC | 1 cut(s) | 389 |
| BsrI | ACTGG | 1 cut(s) | 435 |
| BssECI | CCNNGG | 2 cut(s) | 49, 136 |
| BssMI | GATC | 2 cut(s) | 220, 381 |
| BssT1I | CCWWGG | 1 cut(s) | 136 |
| Bst2UI | CCWGG | 3 cut(s) | 50, 117, 150 |
| Bst4CI | ACNGT | 3 cut(s) | 254, 274, 615 |
| Bst6I | CTCTTC | 1 cut(s) | 535 |
| BstC8I | GCNNGC | 4 cut(s) | 64, 172, 422, 426 |
| BstDEI | CTNAG | 2 cut(s) | 355, 457 |
| BstF5I | GGATG | 2 cut(s) | 463, 586 |
| BstKTI | GATC | 2 cut(s) | 223, 384 |
| BstMBI | GATC | 2 cut(s) | 220, 381 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 68, 103, 152, 458, 603 |
| BstNI | CCWGG | 3 cut(s) | 50, 117, 150 |
| BstSCI | CCNGG | 3 cut(s) | 48, 115, 148 |
| BstSFI | CTRYAG | 2 cut(s) | 31, 692 |
| BstV1I | GCAGC | 3 cut(s) | 232, 410, 439 |
| BsuRI | GGCC | 2 cut(s) | 549, 640 |
| BtrI | CACGTC | 1 cut(s) | 286 |
| BtsCI | GGATG | 2 cut(s) | 463, 586 |
| BtsIMutI | CAGTG | 3 cut(s) | 250, 428, 611 |
| Cac8I | GCNNGC | 4 cut(s) | 64, 172, 422, 426 |
| Cfr13I | GGNCC | 2 cut(s) | 133, 185 |
| Csp6I | GTAC | 1 cut(s) | 100 |
| CviQI | GTAC | 1 cut(s) | 100 |
| DdeI | CTNAG | 2 cut(s) | 355, 457 |
| DpnI | GATC | 2 cut(s) | 222, 383 |
| DpnII | GATC | 2 cut(s) | 220, 381 |
| Eam1104I | CTCTTC | 1 cut(s) | 535 |
| EarI | CTCTTC | 1 cut(s) | 535 |
| EciI | GGCGGA | 1 cut(s) | 58 |
| Eco130I | CCWWGG | 1 cut(s) | 136 |
| Eco147I | AGGCCT | 1 cut(s) | 640 |
| Eco47I | GGWCC | 2 cut(s) | 133, 185 |
| Eco57I | CTGAAG | 2 cut(s) | 68, 146 |
| Eco88I | CYCGRG | 1 cut(s) | 410 |
| EcoO109I | RGGNCCY | 1 cut(s) | 185 |
| EcoRI | GAATTC | 1 cut(s) | 590 |
| EcoRII | CCWGG | 3 cut(s) | 48, 115, 148 |
| EcoT14I | CCWWGG | 1 cut(s) | 136 |
| ErhI | CCWWGG | 1 cut(s) | 136 |
| FaiI | YATR | 6 cut(s) | 57, 110, 362, 675, 682, 712 |
| FaqI | GGGAC | 1 cut(s) | 351 |
| Fnu4HI | GCNGC | 3 cut(s) | 246, 399, 453 |
| FokI | GGATG | 2 cut(s) | 450, 593 |
| Fsp4HI | GCNGC | 3 cut(s) | 246, 399, 453 |
| GluI | GCNGC | 3 cut(s) | 246, 399, 453 |
| HaeIII | GGCC | 2 cut(s) | 549, 640 |
| HapII | CCGG | 1 cut(s) | 598 |
| HindIII | AAGCTT | 1 cut(s) | 563 |
| HinfI | GANTC | 1 cut(s) | 257 |
| HpaII | CCGG | 1 cut(s) | 598 |
| HphI | GGTGA | 1 cut(s) | 244 |
| Hpy188I | TCNGA | 3 cut(s) | 87, 358, 520 |
| Hpy188III | TCNNGA | 4 cut(s) | 131, 226, 587, 663 |
| HpyAV | CCTTC | 3 cut(s) | 82, 223, 229 |
| HpyCH4III | ACNGT | 3 cut(s) | 254, 274, 615 |
| HpyCH4IV | ACGT | 1 cut(s) | 285 |
| HpyCH4V | TGCA | 3 cut(s) | 398, 606, 694 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 68, 103, 152, 458, 603 |
| HpyF3I | CTNAG | 2 cut(s) | 355, 457 |
| HpySE526I | ACGT | 1 cut(s) | 285 |
| Kzo9I | GATC | 2 cut(s) | 220, 381 |
| LmnI | GCTCC | 4 cut(s) | 71, 125, 151, 449 |
| Lsp1109I | GCAGC | 3 cut(s) | 232, 410, 439 |
| LweI | GCATC | 2 cut(s) | 385, 635 |
| MaeII | ACGT | 1 cut(s) | 285 |
| MaeIII | GTNAC | 1 cut(s) | 696 |
| MalI | GATC | 2 cut(s) | 222, 383 |
| MboI | GATC | 2 cut(s) | 220, 381 |
| MboII | GAAGA | 2 cut(s) | 19, 552 |
| MhlI | GDGCHC | 1 cut(s) | 148 |
| MluCI | AATT | 3 cut(s) | 477, 507, 590 |
| MnlI | CCTC | 9 cut(s) | 31, 133, 255, 380, 481, 536, 539, 571, 630 |
| MseI | TTAA | 1 cut(s) | 525 |
| MspA1I | CMGCKG | 1 cut(s) | 245 |
| MspI | CCGG | 1 cut(s) | 598 |
| MspR9I | CCNGG | 3 cut(s) | 50, 117, 150 |
| MvaI | CCWGG | 3 cut(s) | 50, 117, 150 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 68, 103, 152, 458, 603 |
| NdeII | GATC | 2 cut(s) | 220, 381 |
| NlaIV | GGNNCC | 3 cut(s) | 121, 186, 240 |
| NmuCI | GTSAC | 1 cut(s) | 696 |
| PaeR7I | CTCGAG | 1 cut(s) | 410 |
| PceI | AGGCCT | 1 cut(s) | 640 |
| PfeI | GAWTC | 1 cut(s) | 257 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 181 |
| PkrI | GCNGC | 3 cut(s) | 247, 400, 454 |
| PpuMI | RGGWCCY | 1 cut(s) | 185 |
| Psp5II | RGGWCCY | 1 cut(s) | 185 |
| Psp6I | CCWGG | 3 cut(s) | 48, 115, 148 |
| PspGI | CCWGG | 3 cut(s) | 48, 115, 148 |
| PspN4I | GGNNCC | 3 cut(s) | 121, 186, 240 |
| PspPI | GGNCC | 2 cut(s) | 133, 185 |
| PspPPI | RGGWCCY | 1 cut(s) | 185 |
| PspXI | VCTCGAGB | 1 cut(s) | 410 |
| PstI | CTGCAG | 1 cut(s) | 696 |
| PvuII | CAGCTG | 1 cut(s) | 245 |
| RsaI | GTAC | 1 cut(s) | 101 |
| RsaNI | GTAC | 1 cut(s) | 100 |
| SaqAI | TTAA | 1 cut(s) | 525 |
| SatI | GCNGC | 3 cut(s) | 246, 399, 453 |
| Sau3AI | GATC | 2 cut(s) | 220, 381 |
| Sau96I | GGNCC | 2 cut(s) | 133, 185 |
| ScrFI | CCNGG | 3 cut(s) | 50, 117, 150 |
| SduI | GDGCHC | 1 cut(s) | 148 |
| SfaNI | GCATC | 2 cut(s) | 385, 635 |
| SfcI | CTRYAG | 2 cut(s) | 31, 692 |
| Sfr274I | CTCGAG | 1 cut(s) | 410 |
| SinI | GGWCC | 2 cut(s) | 133, 185 |
| SlaI | CTCGAG | 1 cut(s) | 410 |
| SmlI | CTYRAG | 2 cut(s) | 224, 410 |
| SmoI | CTYRAG | 2 cut(s) | 224, 410 |
| Sse9I | AATT | 3 cut(s) | 477, 507, 590 |
| SseBI | AGGCCT | 1 cut(s) | 640 |
| SsiI | CCGC | 1 cut(s) | 69 |
| StuI | AGGCCT | 1 cut(s) | 640 |
| StyD4I | CCNGG | 3 cut(s) | 48, 115, 148 |
| StyI | CCWWGG | 1 cut(s) | 136 |
| TaaI | ACNGT | 3 cut(s) | 254, 274, 615 |
| TaiI | ACGT | 1 cut(s) | 288 |
| TaqI | TCGA | 2 cut(s) | 260, 411 |
| TasI | AATT | 3 cut(s) | 477, 507, 590 |
| TatI | WGTACW | 1 cut(s) | 99 |
| TfiI | GAWTC | 1 cut(s) | 257 |
| Tru1I | TTAA | 1 cut(s) | 525 |
| Tru9I | TTAA | 1 cut(s) | 525 |
| TscAI | CASTG | 3 cut(s) | 257, 435, 618 |
| TseFI | GTSAC | 1 cut(s) | 696 |
| TseI | GCWGC | 3 cut(s) | 245, 398, 452 |
| Tsp45I | GTSAC | 1 cut(s) | 696 |
| TspDTI | ATGAA | 2 cut(s) | 305, 489 |
| TspRI | CASTG | 3 cut(s) | 257, 435, 618 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 181 |
| VpaK11BI | GGWCC | 2 cut(s) | 133, 185 |
| XapI | RAATTY | 2 cut(s) | 477, 590 |
| XhoI | CTCGAG | 1 cut(s) | 410 |