AT5G14510

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016010
Physical Location & Seq
Reverse (-)
4677925 .. 4679317
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14510.1

Sequence Viewer

Length: 984 bp
ATGGAGGAGATTGTGGTAGAGAGTCTTCTTAGCGGTAACAGAGAGTCTCAAATAGAAGCAGCTATAGAGCTGACTAATCTAAGCAGGAAGCAAAGACAAAAATTGGCAGAAAGAGAGATCATTTCTCCTTTGCTCTCGATGTTACAATCTCAAGACTGTATCACAACAGAGGTTGCTCTATCTGCATTACTCAGCCTTGCCTTTGGCAGTGAAAGGAACAAAGTCCGAATTGTGAAATCTGGCGCAGTACCAACGTTGCTAGAAATTCTCCAGTCAGAAACGAAGATGGTAGTTCTTGAATTGGCCATGGCATTTCTTCTGATTCTCTCTTCCTGCAACAAAAACAAGGTTAAGATGGCATCAACCAGGTTGGTTCAGCTTTTAGTTGGACTTATTGGGCTCGATAGACTTACCATCCAGGCCAAGGTTGATGGCATAGCAACACTACAAAATCTATCTACTCTCCATCAGATTGTTCCCCTGGTTATAGCTTCGGGAGCACCATATGCTTTGCTTCAAGTCATCAACTTTTGCGATAAATCTTCCGAATTGGCTGATAAGGCAGTAGCTTTGCTTGAAAACATAATTTCTCATTCACCAGAATCTGTTTCCAGCATCGGTGGAGCAATTGGGGTTCTGGTGGAAGCCATTGAAGAAGGGTCAGCACAGTGTAAAGAGCATGCCGTGGGAATACTACTTGGTATATGCAACAACGACAGAGAGACAAACCGAGGAATGATACTTAGAGAAGGAGTGATGCCTGGATTGCTTCAAGTGAGCGTAGACGGGACACGGAGGGCTAAAGAAATGGCTAGAGAGCTACTGCTACTACTAAGGGACTGCTCTGGCTATGTCATCAAAAACAAACAGTCAAAGATTGAGATTGTTGAGCAAATTATGCGGGAGATTGATCAAGAAGGAGAGCGAATACCTGGAACCATGTTGAAGTTGGTAGAAGAGATGATTTCCAAACTCAGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm KAP

Protein Analysis

327

Amino Acids

35.65

Weight (kDa)

5.51

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_PUB PF25598 4 - 121 5.7e-06 Plant U-box protein ARM repeat region
ARM_PUB PF25598 141 - 281 1.2e-07 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14510
malus_domestica MD09G1024900.v1.1 MD17G1026200.v1.1
prunus_persica Prupe.3G292500_v2.0.a1
pyrus_communis pycom17g02130
rosa_chinensis RchiOBHm_Chr2g0173151
rosa_laevigata RLG00000022164
rosa_multiflora Rmu_sc0020537.1_g000001
rosa_roxburghii Rroxscaffold_2G00079180
rosa_rugosa Rorug02G0565700
rosa_samantha Rh2AG645900 Rh2BG656600 Rh2CG621700 Rh2DG670000
rosa_wichuraiana Rw2G053040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 783
AciI CCGC 2 cut(s) 33, 901
AclI AACGTT 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 424
AgsI TTSAA 6 cut(s) 299, 518, 578, 653, 773, 946
AjnI CCWGG 5 cut(s) 365, 417, 480, 760, 931
AluBI AGCT 6 cut(s) 62, 70, 379, 491, 569, 820
AluI AGCT 6 cut(s) 62, 70, 379, 491, 569, 820
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 2 cut(s) 51, 716
AlwNI CAGNNNCTG 1 cut(s) 605
AoxI GGCC 2 cut(s) 303, 420
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 264
AspLEI GCGC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 588
BalI TGGCCA 1 cut(s) 305
BanII GRGCYC 1 cut(s) 402
BarI GAAGNNNNNNTAC 2 cut(s) 9, 41
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 502
BbvI GCAGC 1 cut(s) 71
BccI CCATC 5 cut(s) 280, 349, 422, 425, 474
BceAI ACGGC 1 cut(s) 668
BciT130I CCWGG 5 cut(s) 367, 419, 482, 762, 933
BclI TGATCA 1 cut(s) 910
BcoDI GTCTC 2 cut(s) 51, 716
BfaI CTAG 2 cut(s) 260, 813
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 5 cut(s) 367, 419, 482, 762, 933
BmiI GGNNCC 1 cut(s) 937
BmrFI CCNGG 5 cut(s) 367, 419, 482, 762, 933
BmsI GCATC 3 cut(s) 368, 624, 747
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 135
BsaJI CCNNGG 5 cut(s) 306, 423, 480, 684, 730
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 271
BseBI CCWGG 5 cut(s) 367, 419, 482, 762, 933
BseDI CCNNGG 5 cut(s) 306, 423, 480, 684, 730
BseGI GGATG 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 2 cut(s) 305, 422
BsiHKAI GWGCWC 1 cut(s) 502
BslFI GGGAC 2 cut(s) 802, 851
BslI CCNNNNNNNGG 1 cut(s) 424
BsmAI GTCTC 2 cut(s) 51, 716
BsmFI GGGAC 2 cut(s) 802, 851
BsnI GGCC 2 cut(s) 305, 422
Bsp1286I GDGCHC 2 cut(s) 402, 502
Bsp143I GATC 2 cut(s) 117, 910
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 33, 901
BspANI GGCC 2 cut(s) 305, 422
BspCNI CTCAG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 937
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 5 cut(s) 306, 423, 480, 684, 730
BssMI GATC 2 cut(s) 117, 910
BssT1I CCWWGG 2 cut(s) 306, 423
Bst2UI CCWGG 5 cut(s) 367, 419, 482, 762, 933
Bst4CI ACNGT 3 cut(s) 158, 669, 870
Bst6I CTCTTC 2 cut(s) 334, 951
BstAPI GCANNNNNTGC 2 cut(s) 506, 898
BstC8I GCNNGC 1 cut(s) 681
BstDEI CTNAG 6 cut(s) 29, 80, 191, 743, 833, 974
BstDSI CCRYGG 2 cut(s) 306, 684
BstF5I GGATG 1 cut(s) 414
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 2 cut(s) 120, 913
BstMAI GTCTC 2 cut(s) 51, 716
BstMBI GATC 2 cut(s) 117, 910
BstMWI GCNNNNNNNGC 6 cut(s) 182, 497, 506, 560, 766, 898
BstNI CCWGG 5 cut(s) 367, 419, 482, 762, 933
BstNSI RCATGY 1 cut(s) 683
BstSCI CCNGG 5 cut(s) 365, 417, 480, 760, 931
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 17
BsuRI GGCC 2 cut(s) 305, 422
BtgI CCRYGG 2 cut(s) 306, 684
BtsCI GGATG 1 cut(s) 414
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 2 cut(s) 214, 674
Cac8I GCNNGC 1 cut(s) 681
CaiI CAGNNNCTG 1 cut(s) 605
CfoI GCGC 1 cut(s) 245
CsiI ACCWGGT 1 cut(s) 365
Csp6I GTAC 1 cut(s) 248
CviAII CATG 3 cut(s) 307, 680, 940
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 6 cut(s) 29, 80, 191, 743, 833, 974
DpnI GATC 2 cut(s) 119, 912
DpnII GATC 2 cut(s) 117, 910
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 2 cut(s) 334, 951
EarI CTCTTC 2 cut(s) 334, 951
Eco130I CCWWGG 2 cut(s) 306, 423
Eco24I GRGCYC 1 cut(s) 402
EcoRII CCWGG 5 cut(s) 365, 417, 480, 760, 931
EcoT14I CCWWGG 2 cut(s) 306, 423
EcoT38I GRGCYC 1 cut(s) 402
ErhI CCWWGG 2 cut(s) 306, 423
FaeI CATG 3 cut(s) 310, 683, 943
FaqI GGGAC 2 cut(s) 802, 851
FatI CATG 3 cut(s) 306, 679, 939
FauI CCCGC 1 cut(s) 894
FauNDI CATATG 1 cut(s) 505
FbaI TGATCA 1 cut(s) 910
FblI GTMKAC 1 cut(s) 783
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 2 cut(s) 260, 813
GlaI GCGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 254
HaeIII GGCC 2 cut(s) 305, 422
HhaI GCGC 1 cut(s) 245
Hin1II CATG 3 cut(s) 310, 683, 943
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 4 cut(s) 22, 44, 322, 602
HphI GGTGA 1 cut(s) 588
Hpy166II GTNNAC 1 cut(s) 784
Hpy188I TCNGA 5 cut(s) 227, 277, 321, 471, 547
Hpy188III TCNNGA 5 cut(s) 136, 152, 296, 495, 914
Hpy8I GTNNAC 1 cut(s) 784
HpyAV CCTTC 3 cut(s) 650, 743, 911
HpyCH4III ACNGT 3 cut(s) 158, 669, 870
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 3 cut(s) 185, 336, 708
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 497, 506, 560, 766, 898
HpyF3I CTNAG 6 cut(s) 29, 80, 191, 743, 833, 974
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 3 cut(s) 310, 683, 943
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 910
Kzo9I GATC 2 cut(s) 117, 910
LmnI GCTCC 2 cut(s) 497, 623
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 3 cut(s) 368, 624, 747
MabI ACCWGGT 1 cut(s) 365
MaeI CTAG 2 cut(s) 260, 813
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 2 cut(s) 35, 141
MalI GATC 2 cut(s) 119, 912
MboI GATC 2 cut(s) 117, 910
MboII GAAGA 7 cut(s) 17, 295, 308, 321, 534, 665, 968
MfeI CAATTG 1 cut(s) 627
MhlI GDGCHC 2 cut(s) 402, 502
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 8 cut(s) 101, 228, 264, 299, 548, 585, 627, 894
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 2 cut(s) 31, 53
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 3 cut(s) 163, 725, 789
Mox20I TGGCCA 1 cut(s) 305
MscI TGGCCA 1 cut(s) 305
MseI TTAA 1 cut(s) 351
Msp20I TGGCCA 1 cut(s) 305
MspR9I CCNGG 5 cut(s) 367, 419, 482, 762, 933
MunI CAATTG 1 cut(s) 627
MvaI CCWGG 5 cut(s) 367, 419, 482, 762, 933
MwoI GCNNNNNNNGC 6 cut(s) 182, 497, 506, 560, 766, 898
NcoI CCATGG 1 cut(s) 306
NdeI CATATG 1 cut(s) 505
NdeII GATC 2 cut(s) 117, 910
NlaIII CATG 3 cut(s) 310, 683, 943
NlaIV GGNNCC 1 cut(s) 937
NspI RCATGY 1 cut(s) 683
PaeI GCATGC 1 cut(s) 683
PfeI GAWTC 2 cut(s) 322, 602
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 2 cut(s) 30, 52
PpsI GAGTC 2 cut(s) 30, 52
Psp1406I AACGTT 1 cut(s) 254
Psp6I CCWGG 5 cut(s) 365, 417, 480, 760, 931
PspGI CCWGG 5 cut(s) 365, 417, 480, 760, 931
PspN4I GGNNCC 1 cut(s) 937
PstNI CAGNNNCTG 1 cut(s) 605
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 117, 910
SchI GAGTC 2 cut(s) 31, 53
ScrFI CCNGG 5 cut(s) 367, 419, 482, 762, 933
SduI GDGCHC 2 cut(s) 402, 502
SexAI ACCWGGT 1 cut(s) 365
SfaNI GCATC 3 cut(s) 368, 624, 747
SfcI CTRYAG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 150
SmoI CTYRAG 1 cut(s) 150
SphI GCATGC 1 cut(s) 683
Sse9I AATT 8 cut(s) 101, 228, 264, 299, 548, 585, 627, 894
SsiI CCGC 2 cut(s) 33, 901
SspMI CTAG 2 cut(s) 260, 813
StyD4I CCNGG 5 cut(s) 365, 417, 480, 760, 931
StyI CCWWGG 2 cut(s) 306, 423
TaaI ACNGT 3 cut(s) 158, 669, 870
TaiI ACGT 1 cut(s) 257
TaqI TCGA 2 cut(s) 137, 402
TasI AATT 8 cut(s) 101, 228, 264, 299, 548, 585, 627, 894
TfiI GAWTC 2 cut(s) 322, 602
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 2 cut(s) 214, 674
TseI GCWGC 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 808
TspRI CASTG 2 cut(s) 214, 674
XapI RAATTY 1 cut(s) 264
XceI RCATGY 1 cut(s) 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 946
XmiI GTMKAC 1 cut(s) 783
XspI CTAG 2 cut(s) 260, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.