MD17G1026200.v1.1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016010
Physical Location & Seq
Forward (+)
1887610 .. 1888832
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1026200.v1.1.491

Sequence Viewer

Length: 1014 bp
ATGGAGGAGCTGGTGCTGCAAAACCTGTTTTCCGGCGACCGGGCGGCGCAGATTGAAGCGGCGACGGAGCTGGGTAAGCTGAAGAGCAAGCAGAGGCACAAGTTGGCAGAGAGGGGCGTTATGGTTCCGTTGATTTCGATGCTGCATTCGGAGGATGCCGAAGCCATTGAAGCTTCTCTGTTTTCTCTACTTAGTCTTGCCTTTGGTAGTGAAAGAAACAAGAGTAGAATTGTGAAGTCCGGGGCTTTACCGGCGTTGCTAAACCTGCTCCGCTGCGAAAGCAAGGCGGTGATCGAGCTCACGATAGCGGCTTTTTTGATCCTTTCGTCTTGCAAGGGAAACAAGCTACCGATTGCATCGTCCGGGGCCATCCAACTAATAGTTGAACTTCTCAATCAAGACTATGCTGAAGGCATCAGCCTGCAAGCCAGACTCGACGGCATAGCCACACTACACAACCTCTCGACCTGCCATCAGATTATTCCGTCATTGGTTTCTTCCGGCGTGGTGTTTTCGTTGCAACAAACATTCCACAGCTTGGAAAAATCAAACCAACTGGTTGAGAAGGCAATCGCGCTACTTGACGACATTGTTTCTTCATCCGAGACTGCGCTCGAGGAAACTGCAGGTACGTGCGGCACAATCCGGGCACTGGTTGAGACAATTGAAGAGGGATCGACGAAATCCAAGGAGCACGCAGCGAGAATCCTCCTGCTTATATGCCAGAGCTGCAGAGAAAAGTACAGAGGACTGATACTGAGGGAAGGAGCAATGCCGGGACTGCTTCAGCTGAGCGGCGATGGGTCGTGGACGGCTAAAACCACGGCACGGGAGTTGCTGTTTCTTTTGAGAGACTGTTCCAACTATGGTTCGAGAAACAAGCAGTCGAGGAACATGGTTATAGAGCAGATTATGGAGGAAATCGATGCCGAAGGAGAGAGAGTTGCGGGGACAAGTACATCGGCACAGAGGCTGGTGGAGGAGATGCTTGCAAAGATCAGCATCGGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm KAP

Protein Analysis

338

Amino Acids

36.58

Weight (kDa)

5.81

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 24 - 136 3.8e-06 ARMC5
ARM_PUB PF25598 145 - 287 5.6e-08 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14510
malus_domestica MD09G1024900.v1.1 MD17G1026200.v1.1
prunus_persica Prupe.3G292500_v2.0.a1
pyrus_communis pycom17g02130
rosa_chinensis RchiOBHm_Chr2g0173151
rosa_laevigata RLG00000022164
rosa_multiflora Rmu_sc0020537.1_g000001
rosa_roxburghii Rroxscaffold_2G00079180
rosa_rugosa Rorug02G0565700
rosa_samantha Rh2AG645900 Rh2BG656600 Rh2CG621700 Rh2DG670000
rosa_wichuraiana Rw2G053040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 273, 476, 617
AccB7I CCANNNNNTGG 1 cut(s) 538
AccBSI CCGCTC 1 cut(s) 795
AccII CGCG 1 cut(s) 575
AciI CCGC 8 cut(s) 44, 59, 271, 287, 308, 636, 795, 947
AclWI GGATC 2 cut(s) 313, 682
AcuI CTGAAG 3 cut(s) 101, 429, 770
AfaI GTAC 3 cut(s) 631, 743, 958
AfiI CCNNNNNNNGG 4 cut(s) 39, 538, 652, 828
AgsI TTSAA 4 cut(s) 56, 170, 386, 668
AluBI AGCT 9 cut(s) 10, 70, 79, 173, 298, 346, 537, 729, 790
AluI AGCT 9 cut(s) 10, 70, 79, 173, 298, 346, 537, 729, 790
Alw21I GWGCWC 2 cut(s) 300, 696
Alw26I GTCTC 3 cut(s) 599, 653, 846
AlwI GGATC 2 cut(s) 313, 682
AlwNI CAGNNNCTG 1 cut(s) 973
Ama87I CYCGRG 1 cut(s) 614
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 5 cut(s) 16, 142, 273, 698, 729
AspLEI GCGC 3 cut(s) 49, 577, 613
AspS9I GGNCC 1 cut(s) 366
AsuC2I CCSGG 5 cut(s) 41, 241, 364, 647, 777
AsuHPI GGTGA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 614
BaeGI GKGCMC 1 cut(s) 652
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 2 cut(s) 300, 696
BbvI GCAGC 5 cut(s) 3, 129, 260, 710, 716
BccI CCATC 3 cut(s) 377, 480, 794
BceAI ACGGC 3 cut(s) 454, 828, 840
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BcnI CCSGG 5 cut(s) 41, 241, 364, 647, 777
BcoDI GTCTC 3 cut(s) 599, 653, 846
BfmI CTRYAG 2 cut(s) 624, 730
BfuAI ACCTGC 3 cut(s) 273, 476, 617
BlpI GCTNAGC 1 cut(s) 791
Bme1390I CCNGG 5 cut(s) 41, 241, 364, 647, 777
BmeT110I CYCGRG 1 cut(s) 614
BmgT120I GGNCC 1 cut(s) 366
BmiI GGNNCC 2 cut(s) 126, 367
BmrFI CCNGG 5 cut(s) 41, 241, 364, 647, 777
BmsI GCATC 6 cut(s) 129, 145, 365, 423, 916, 975
Bpu1102I GCTNAGC 1 cut(s) 791
BpuMI CCSGG 5 cut(s) 41, 241, 364, 647, 777
Bsa29I ATCGAT 1 cut(s) 924
BsaAI YACGTR 1 cut(s) 633
BsaBI GATNNNNATC 1 cut(s) 1001
BsaJI CCNNGG 4 cut(s) 240, 363, 687, 822
BsaXI ACNNNNNCTCC 4 cut(s) 824, 854, 927, 957
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 538, 652, 828
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 2 cut(s) 561, 657
Bse3DI GCAATG 1 cut(s) 777
Bse8I GATNNNNATC 1 cut(s) 1001
BseCI ATCGAT 1 cut(s) 924
BseDI CCNNGG 4 cut(s) 240, 363, 687, 822
BseGI GGATG 3 cut(s) 160, 369, 599
BseJI GATNNNNATC 1 cut(s) 1001
BseLI CCNNNNNNNGG 4 cut(s) 39, 538, 652, 828
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 2 cut(s) 749, 782
BseNI ACTGG 2 cut(s) 561, 657
BseRI GAGGAG 2 cut(s) 20, 995
BseSI GKGCMC 1 cut(s) 652
BseXI GCAGC 5 cut(s) 3, 129, 260, 710, 716
BseYI CCCAGC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 575
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 368
BshVI ATCGAT 1 cut(s) 924
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 2 cut(s) 300, 696
BsiHKCI CYCGRG 1 cut(s) 614
BsiSI CCGG 8 cut(s) 33, 40, 240, 251, 363, 501, 646, 776
BslFI GGGAC 2 cut(s) 792, 964
BslI CCNNNNNNNGG 4 cut(s) 39, 538, 652, 828
BsmAI GTCTC 3 cut(s) 599, 653, 846
BsmFI GGGAC 2 cut(s) 792, 964
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 614
Bsp1286I GDGCHC 3 cut(s) 300, 652, 696
Bsp143I GATC 4 cut(s) 291, 318, 674, 996
Bsp1720I GCTNAGC 1 cut(s) 791
BspACI CCGC 8 cut(s) 44, 59, 271, 287, 308, 636, 795, 947
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 2 cut(s) 750, 783
BspDI ATCGAT 1 cut(s) 924
BspFNI CGCG 1 cut(s) 575
BspLI GGNNCC 2 cut(s) 126, 367
BspMAI CTGCAG 2 cut(s) 628, 734
BspMI ACCTGC 3 cut(s) 273, 476, 617
BspPI GGATC 2 cut(s) 313, 682
BspQI GCTCTTC 1 cut(s) 77
BsrBI CCGCTC 1 cut(s) 795
BsrDI GCAATG 1 cut(s) 777
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 2 cut(s) 561, 657
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 4 cut(s) 240, 363, 687, 822
BssMI GATC 4 cut(s) 291, 318, 674, 996
BssT1I CCWWGG 1 cut(s) 687
Bst4CI ACNGT 1 cut(s) 857
Bst6I CTCTTC 2 cut(s) 77, 663
BstBAI YACGTR 1 cut(s) 633
BstC8I GCNNGC 5 cut(s) 89, 422, 426, 696, 990
BstDEI CTNAG 3 cut(s) 191, 758, 791
BstDSI CCRYGG 1 cut(s) 822
BstF5I GGATG 3 cut(s) 160, 369, 599
BstFNI CGCG 1 cut(s) 575
BstHHI GCGC 3 cut(s) 49, 577, 613
BstKTI GATC 4 cut(s) 294, 321, 677, 999
BstMAI GTCTC 3 cut(s) 599, 653, 846
BstMBI GATC 4 cut(s) 291, 318, 674, 996
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 8 cut(s) 16, 76, 170, 251, 265, 279, 729, 781
BstSCI CCNGG 5 cut(s) 39, 239, 362, 645, 775
BstSFI CTRYAG 2 cut(s) 624, 730
BstSLI GKGCMC 1 cut(s) 652
BstUI CGCG 1 cut(s) 575
BstV1I GCAGC 5 cut(s) 3, 129, 260, 710, 716
Bsu15I ATCGAT 1 cut(s) 924
BsuRI GGCC 1 cut(s) 368
BsuTUI ATCGAT 1 cut(s) 924
BtgI CCRYGG 1 cut(s) 822
BtgZI GCGATG 1 cut(s) 813
BtsCI GGATG 3 cut(s) 160, 369, 599
BtsIMutI CAGTG 1 cut(s) 650
BveI ACCTGC 3 cut(s) 273, 476, 617
Cac8I GCNNGC 5 cut(s) 89, 422, 426, 696, 990
CaiI CAGNNNCTG 1 cut(s) 973
CfoI GCGC 3 cut(s) 49, 577, 613
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 366
ClaI ATCGAT 1 cut(s) 924
Csp6I GTAC 3 cut(s) 630, 742, 957
CviAII CATG 1 cut(s) 895
CviQI GTAC 3 cut(s) 630, 742, 957
DdeI CTNAG 3 cut(s) 191, 758, 791
DpnI GATC 4 cut(s) 293, 320, 676, 998
DpnII GATC 4 cut(s) 291, 318, 674, 996
Eam1104I CTCTTC 2 cut(s) 77, 663
EarI CTCTTC 2 cut(s) 77, 663
Ecl136II GAGCTC 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 300
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 3 cut(s) 101, 429, 770
Eco88I CYCGRG 1 cut(s) 614
EcoICRI GAGCTC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 687
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 687
FaeI CATG 1 cut(s) 898
FaiI YATR 9 cut(s) 122, 405, 443, 719, 721, 867, 896, 902, 914
FaqI GGGAC 2 cut(s) 792, 964
FatI CATG 1 cut(s) 894
FauI CCCGC 1 cut(s) 940
FokI GGATG 3 cut(s) 167, 356, 586
FriOI GRGCYC 1 cut(s) 300
GlaI GCGC 3 cut(s) 48, 576, 612
GsaI CCCAGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 368
HapII CCGG 8 cut(s) 33, 40, 240, 251, 363, 501, 646, 776
HhaI GCGC 3 cut(s) 49, 577, 613
Hin1II CATG 1 cut(s) 898
Hin6I GCGC 3 cut(s) 47, 575, 611
HinP1I GCGC 3 cut(s) 47, 575, 611
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 2 cut(s) 432, 705
HpaII CCGG 8 cut(s) 33, 40, 240, 251, 363, 501, 646, 776
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 810
Hpy188I TCNGA 4 cut(s) 151, 477, 604, 1007
Hpy188III TCNNGA 4 cut(s) 301, 398, 463, 873
Hpy8I GTNNAC 1 cut(s) 810
Hpy99I CGWCG 3 cut(s) 67, 440, 682
HpyAV CCTTC 4 cut(s) 404, 559, 758, 926
HpyCH4III ACNGT 1 cut(s) 857
HpyCH4IV ACGT 2 cut(s) 632, 1009
HpyCH4V TGCA 9 cut(s) 19, 145, 333, 356, 424, 520, 626, 732, 992
HpyF10VI GCNNNNNNNGC 8 cut(s) 16, 76, 170, 251, 265, 279, 729, 781
HpyF3I CTNAG 3 cut(s) 191, 758, 791
HpySE526I ACGT 2 cut(s) 632, 1009
Hsp92II CATG 1 cut(s) 898
HspAI GCGC 3 cut(s) 47, 575, 611
Kzo9I GATC 4 cut(s) 291, 318, 674, 996
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 5 cut(s) 7, 67, 273, 691, 767
Lsp1109I GCAGC 5 cut(s) 3, 129, 260, 710, 716
LweI GCATC 6 cut(s) 129, 145, 365, 423, 916, 975
MaeII ACGT 2 cut(s) 632, 1009
MalI GATC 4 cut(s) 293, 320, 676, 998
MbiI CCGCTC 1 cut(s) 795
MboI GATC 4 cut(s) 291, 318, 674, 996
MboII GAAGA 4 cut(s) 94, 489, 588, 680
MfeI CAATTG 1 cut(s) 663
MhlI GDGCHC 3 cut(s) 300, 652, 696
MluCI AATT 2 cut(s) 228, 663
MlyI GAGTC 1 cut(s) 426
MmeI TCCRAC 2 cut(s) 397, 885
MspA1I CMGCKG 2 cut(s) 273, 790
MspI CCGG 8 cut(s) 33, 40, 240, 251, 363, 501, 646, 776
MspR9I CCNGG 5 cut(s) 41, 241, 364, 647, 777
MunI CAATTG 1 cut(s) 663
Mva1269I GAATGC 1 cut(s) 145
MvnI CGCG 1 cut(s) 575
MwoI GCNNNNNNNGC 8 cut(s) 16, 76, 170, 251, 265, 279, 729, 781
NciI CCSGG 5 cut(s) 41, 241, 364, 647, 777
NdeII GATC 4 cut(s) 291, 318, 674, 996
NlaIII CATG 1 cut(s) 898
NlaIV GGNNCC 2 cut(s) 126, 367
PaeR7I CTCGAG 1 cut(s) 614
PciSI GCTCTTC 1 cut(s) 77
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 705
PflMI CCANNNNNTGG 1 cut(s) 538
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
Ppu21I YACGTR 1 cut(s) 633
Psp124BI GAGCTC 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 126, 367
PspPI GGNCC 1 cut(s) 366
PspXI VCTCGAGB 1 cut(s) 614
PstI CTGCAG 2 cut(s) 628, 734
PstNI CAGNNNCTG 1 cut(s) 973
PvuII CAGCTG 1 cut(s) 790
RsaI GTAC 3 cut(s) 631, 743, 958
RsaNI GTAC 3 cut(s) 630, 742, 957
SacI GAGCTC 1 cut(s) 300
SapI GCTCTTC 1 cut(s) 77
Sau3AI GATC 4 cut(s) 291, 318, 674, 996
Sau96I GGNCC 1 cut(s) 366
SchI GAGTC 1 cut(s) 426
ScrFI CCNGG 5 cut(s) 41, 241, 364, 647, 777
SduI GDGCHC 3 cut(s) 300, 652, 696
SfaNI GCATC 6 cut(s) 129, 145, 365, 423, 916, 975
SfcI CTRYAG 2 cut(s) 624, 730
Sfr274I CTCGAG 1 cut(s) 614
SlaI CTCGAG 1 cut(s) 614
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
Sse9I AATT 2 cut(s) 228, 663
SsiI CCGC 8 cut(s) 44, 59, 271, 287, 308, 636, 795, 947
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 5 cut(s) 39, 239, 362, 645, 775
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 1 cut(s) 857
TaiI ACGT 2 cut(s) 635, 1012
TaqI TCGA 9 cut(s) 137, 294, 435, 464, 615, 677, 872, 887, 924
TasI AATT 2 cut(s) 228, 663
TatI WGTACW 2 cut(s) 741, 956
TauI GCSGC 5 cut(s) 47, 62, 311, 639, 798
TfiI GAWTC 1 cut(s) 705
TscAI CASTG 1 cut(s) 657
TseI GCWGC 5 cut(s) 16, 142, 273, 698, 729
TspDTI ATGAA 1 cut(s) 588
TspGWI ACGGA 3 cut(s) 80, 117, 474
TspRI CASTG 1 cut(s) 657
Van91I CCANNNNNTGG 1 cut(s) 538
XhoI CTCGAG 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.