pycom17g02130

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016010
Physical Location & Seq
Forward (+)
1344146 .. 1345369
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g02130.2

Sequence Viewer

Length: 1014 bp
ATGGAGGAGCTGGTGCTGCACAACCTGTTTTCCGGCGACCGGGCGGCGCAGATTGAGGCAGCGACGGAGCTGGGTAAGCTGAAGAGCAAGCAGAGGCACAAGTTGGCAGAGAGGGGCGTTATGGTCCCGTTGATTTCGATGCTGCATTCGGAGGATGCCGAAGCCATTGAAGCTTCTCTGTTTTCTCTACTTAGTCTTGCCTTTGGTAGTGAAAGAAACAAGAGTAGAATTGTGAAGTCCGGGGCTTTACCGGCGTTGCTAAACCTCCTCCGCTGTGAAAGCAAGGCGGTGATCGAGCTCACGATAGCGGCTTTTTTGATCCTTTCGTCTTGCAAGGGAAACAAGCTACCGATTGCATCGGCCGGAGCCATCCAACTAATAGTTGAACTTCTCAATCAGGACTATGCTGAAGGCATCAGCCTGCAAGCCAGACTCGACGGCATAGCCACGCTGCACAACCTCTCGACCTGCCATCAGATTATTCCGTCTTTGGTTTCTTCGGGCATAGTGTTTTCGTTGCAACAAATATTCCACGGCTTGGAAAAATCAAACCAACTGGTTGAGAAGGCAATCGCGCTACTTGACGACATTGTTTCTTCATCCGAGACTGCGCTCGAGGAAACTGCAGCTACGTGCGGTGCAATCCAGGCACTAGTTGAGACAATTGAAGAGGGATCGACGAAATCCAAGGAGCACGCAGCGAGAATCCTCCTGCTTATATGCCAGAGCTGCAGAGAAAAGTACAGAGGACTGATACTGAGGGAAGGAGCAATGCCGGGACTGCTTCAGCTGAGCGTCGATGGGTCGTGGACGGCTAAAACCACGGCACGGGAGTTGCTGTTTCTTTTGAGAGACTGTTCCAACTATGGTTCGAGAAACATGCAGTCGAGGAACAAGGTTATAGAGCAGATTATGGAGGAAATCGATGCCGAAGGAGAGAGAGTTGCGGGGACAAGTACATCGGCACAGAGGCTGGTGGAGGAGATGCTTTCAAAGATCAGCATCGGACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm KAP

Protein Analysis

338

Amino Acids

36.58

Weight (kDa)

5.76

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14510
malus_domestica MD09G1024900.v1.1 MD17G1026200.v1.1
prunus_persica Prupe.3G292500_v2.0.a1
pyrus_communis pycom17g02130
rosa_chinensis RchiOBHm_Chr2g0173151
rosa_laevigata RLG00000022164
rosa_multiflora Rmu_sc0020537.1_g000001
rosa_roxburghii Rroxscaffold_2G00079180
rosa_rugosa Rorug02G0565700
rosa_samantha Rh2AG645900 Rh2BG656600 Rh2CG621700 Rh2DG670000
rosa_wichuraiana Rw2G053040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 476
AccB7I CCANNNNNTGG 1 cut(s) 538
AccII CGCG 1 cut(s) 575
AciI CCGC 6 cut(s) 44, 271, 287, 308, 636, 947
AclWI GGATC 2 cut(s) 313, 682
AcoI YGGCCR 1 cut(s) 360
AcuI CTGAAG 3 cut(s) 101, 429, 770
AfaI GTAC 2 cut(s) 743, 958
AfiI CCNNNNNNNGG 3 cut(s) 39, 538, 828
AgsI TTSAA 4 cut(s) 170, 386, 668, 993
AhlI ACTAGT 1 cut(s) 652
AjnI CCWGG 1 cut(s) 645
AluBI AGCT 9 cut(s) 10, 70, 79, 173, 298, 346, 629, 729, 790
AluI AGCT 9 cut(s) 10, 70, 79, 173, 298, 346, 629, 729, 790
Alw21I GWGCWC 2 cut(s) 300, 696
Alw26I GTCTC 3 cut(s) 599, 653, 846
AlwI GGATC 2 cut(s) 313, 682
AlwNI CAGNNNCTG 1 cut(s) 973
Ama87I CYCGRG 1 cut(s) 614
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 7 cut(s) 16, 59, 142, 451, 626, 698, 729
AspLEI GCGC 3 cut(s) 49, 577, 613
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 3 cut(s) 41, 241, 777
AsuHPI GGTGA 1 cut(s) 301
AvaI CYCGRG 1 cut(s) 614
AvaII GGWCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 2 cut(s) 300, 696
BbvI GCAGC 7 cut(s) 3, 71, 129, 438, 638, 710, 716
BccI CCATC 3 cut(s) 377, 480, 794
BceAI ACGGC 4 cut(s) 454, 550, 828, 840
BcgI CGANNNNNNTGC 4 cut(s) 605, 639, 862, 896
BciT130I CCWGG 1 cut(s) 647
BcnI CCSGG 3 cut(s) 41, 241, 777
BcoDI GTCTC 3 cut(s) 599, 653, 846
BcuI ACTAGT 1 cut(s) 652
BfaI CTAG 1 cut(s) 653
BfmI CTRYAG 2 cut(s) 624, 730
BfuAI ACCTGC 1 cut(s) 476
BisI GCNGC 9 cut(s) 17, 45, 60, 143, 309, 452, 627, 699, 730
BlpI GCTNAGC 1 cut(s) 791
BlsI GCNGC 9 cut(s) 18, 46, 61, 144, 310, 453, 628, 700, 731
Bme1390I CCNGG 4 cut(s) 41, 241, 647, 777
Bme18I GGWCC 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 614
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 126, 367
BmrFI CCNGG 4 cut(s) 41, 241, 647, 777
BmsI GCATC 6 cut(s) 129, 145, 365, 423, 916, 975
Bpu1102I GCTNAGC 1 cut(s) 791
BpuMI CCSGG 3 cut(s) 41, 241, 777
Bsa29I ATCGAT 1 cut(s) 924
BsaAI YACGTR 1 cut(s) 633
BsaBI GATNNNNATC 1 cut(s) 1001
BsaJI CCNNGG 4 cut(s) 240, 532, 687, 822
BsaXI ACNNNNNCTCC 4 cut(s) 824, 854, 927, 957
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 538, 828
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 561
Bse3DI GCAATG 1 cut(s) 777
Bse8I GATNNNNATC 1 cut(s) 1001
BseBI CCWGG 1 cut(s) 647
BseCI ATCGAT 1 cut(s) 924
BseDI CCNNGG 4 cut(s) 240, 532, 687, 822
BseGI GGATG 3 cut(s) 160, 369, 599
BseJI GATNNNNATC 1 cut(s) 1001
BseLI CCNNNNNNNGG 3 cut(s) 39, 538, 828
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 2 cut(s) 749, 782
BseNI ACTGG 1 cut(s) 561
BseRI GAGGAG 3 cut(s) 20, 257, 995
BseX3I CGGCCG 1 cut(s) 360
BseXI GCAGC 7 cut(s) 3, 71, 129, 438, 638, 710, 716
BseYI CCCAGC 1 cut(s) 70
BsgI GTGCAG 1 cut(s) 437
Bsh1236I CGCG 1 cut(s) 575
Bsh1285I CGRYCG 2 cut(s) 40, 363
BshFI GGCC 1 cut(s) 362
BshVI ATCGAT 1 cut(s) 924
BsiEI CGRYCG 2 cut(s) 40, 363
BsiHKAI GWGCWC 2 cut(s) 300, 696
BsiHKCI CYCGRG 1 cut(s) 614
BsiSI CCGG 6 cut(s) 33, 40, 240, 251, 363, 776
BslFI GGGAC 3 cut(s) 110, 792, 964
BslI CCNNNNNNNGG 3 cut(s) 39, 538, 828
BsmAI GTCTC 3 cut(s) 599, 653, 846
BsmFI GGGAC 3 cut(s) 110, 792, 964
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 614
Bsp1286I GDGCHC 2 cut(s) 300, 696
Bsp143I GATC 4 cut(s) 291, 318, 674, 996
Bsp1720I GCTNAGC 1 cut(s) 791
BspACI CCGC 6 cut(s) 44, 271, 287, 308, 636, 947
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 2 cut(s) 750, 783
BspDI ATCGAT 1 cut(s) 924
BspFNI CGCG 1 cut(s) 575
BspLI GGNNCC 2 cut(s) 126, 367
BspMAI CTGCAG 2 cut(s) 628, 734
BspMI ACCTGC 1 cut(s) 476
BspPI GGATC 2 cut(s) 313, 682
BspQI GCTCTTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 777
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 1 cut(s) 561
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 4 cut(s) 240, 532, 687, 822
BssMI GATC 4 cut(s) 291, 318, 674, 996
BssT1I CCWWGG 1 cut(s) 687
Bst2UI CCWGG 1 cut(s) 647
Bst4CI ACNGT 1 cut(s) 857
Bst6I CTCTTC 2 cut(s) 77, 663
BstBAI YACGTR 1 cut(s) 633
BstC8I GCNNGC 4 cut(s) 89, 422, 426, 696
BstDEI CTNAG 3 cut(s) 191, 758, 791
BstDSI CCRYGG 2 cut(s) 532, 822
BstF5I GGATG 3 cut(s) 160, 369, 599
BstFNI CGCG 1 cut(s) 575
BstHHI GCGC 3 cut(s) 49, 577, 613
BstKTI GATC 4 cut(s) 294, 321, 677, 999
BstMAI GTCTC 3 cut(s) 599, 653, 846
BstMBI GATC 4 cut(s) 291, 318, 674, 996
BstMCI CGRYCG 2 cut(s) 40, 363
BstMWI GCNNNNNNNGC 8 cut(s) 16, 76, 170, 251, 279, 647, 729, 781
BstNI CCWGG 1 cut(s) 647
BstNSI RCATGY 1 cut(s) 883
BstSCI CCNGG 4 cut(s) 39, 239, 645, 775
BstSFI CTRYAG 2 cut(s) 624, 730
BstUI CGCG 1 cut(s) 575
BstV1I GCAGC 7 cut(s) 3, 71, 129, 438, 638, 710, 716
BstZI CGGCCG 1 cut(s) 360
Bsu15I ATCGAT 1 cut(s) 924
BsuRI GGCC 1 cut(s) 362
BsuTUI ATCGAT 1 cut(s) 924
BtgI CCRYGG 2 cut(s) 532, 822
BtsCI GGATG 3 cut(s) 160, 369, 599
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 4 cut(s) 89, 422, 426, 696
CaiI CAGNNNCTG 1 cut(s) 973
CfoI GCGC 3 cut(s) 49, 577, 613
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 124
ClaI ATCGAT 1 cut(s) 924
CseI GACGC 1 cut(s) 784
Csp6I GTAC 2 cut(s) 742, 957
CviAII CATG 1 cut(s) 880
CviQI GTAC 2 cut(s) 742, 957
DdeI CTNAG 3 cut(s) 191, 758, 791
DpnI GATC 4 cut(s) 293, 320, 676, 998
DpnII GATC 4 cut(s) 291, 318, 674, 996
EaeI YGGCCR 1 cut(s) 360
EagI CGGCCG 1 cut(s) 360
Eam1104I CTCTTC 2 cut(s) 77, 663
EarI CTCTTC 2 cut(s) 77, 663
Ecl136II GAGCTC 1 cut(s) 298
EclXI CGGCCG 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 124
Eco52I CGGCCG 1 cut(s) 360
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 3 cut(s) 101, 429, 770
Eco88I CYCGRG 1 cut(s) 614
EcoICRI GAGCTC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 645
EcoT14I CCWWGG 1 cut(s) 687
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 687
FaeI CATG 1 cut(s) 883
FaqI GGGAC 3 cut(s) 110, 792, 964
FatI CATG 1 cut(s) 879
FauI CCCGC 1 cut(s) 940
Fnu4HI GCNGC 9 cut(s) 17, 45, 60, 143, 309, 452, 627, 699, 730
FokI GGATG 3 cut(s) 167, 356, 586
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 9 cut(s) 17, 45, 60, 143, 309, 452, 627, 699, 730
FspBI CTAG 1 cut(s) 653
GlaI GCGC 3 cut(s) 48, 576, 612
GluI GCNGC 9 cut(s) 17, 45, 60, 143, 309, 452, 627, 699, 730
GsaI CCCAGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 362
HapII CCGG 6 cut(s) 33, 40, 240, 251, 363, 776
HgaI GACGC 1 cut(s) 784
HhaI GCGC 3 cut(s) 49, 577, 613
Hin1II CATG 1 cut(s) 883
Hin6I GCGC 3 cut(s) 47, 575, 611
HinP1I GCGC 3 cut(s) 47, 575, 611
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 2 cut(s) 432, 705
HpaII CCGG 6 cut(s) 33, 40, 240, 251, 363, 776
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 810
Hpy188I TCNGA 4 cut(s) 151, 477, 604, 1007
Hpy188III TCNNGA 4 cut(s) 301, 398, 463, 873
Hpy8I GTNNAC 1 cut(s) 810
Hpy99I CGWCG 4 cut(s) 67, 440, 682, 800
HpyAV CCTTC 4 cut(s) 404, 559, 758, 926
HpyCH4III ACNGT 1 cut(s) 857
HpyCH4IV ACGT 1 cut(s) 632
HpyF10VI GCNNNNNNNGC 8 cut(s) 16, 76, 170, 251, 279, 647, 729, 781
HpyF3I CTNAG 3 cut(s) 191, 758, 791
HpySE526I ACGT 1 cut(s) 632
Hsp92II CATG 1 cut(s) 883
HspAI GCGC 3 cut(s) 47, 575, 611
Kzo9I GATC 4 cut(s) 291, 318, 674, 996
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 5 cut(s) 7, 67, 365, 691, 767
Lsp1109I GCAGC 7 cut(s) 3, 71, 129, 438, 638, 710, 716
LweI GCATC 6 cut(s) 129, 145, 365, 423, 916, 975
MaeI CTAG 1 cut(s) 653
MaeII ACGT 1 cut(s) 632
MalI GATC 4 cut(s) 293, 320, 676, 998
MboI GATC 4 cut(s) 291, 318, 674, 996
MboII GAAGA 4 cut(s) 94, 489, 588, 680
MfeI CAATTG 1 cut(s) 663
MhlI GDGCHC 2 cut(s) 300, 696
MluCI AATT 2 cut(s) 228, 663
MlyI GAGTC 1 cut(s) 426
MmeI TCCRAC 2 cut(s) 397, 885
MspA1I CMGCKG 2 cut(s) 273, 790
MspI CCGG 6 cut(s) 33, 40, 240, 251, 363, 776
MspR9I CCNGG 4 cut(s) 41, 241, 647, 777
MunI CAATTG 1 cut(s) 663
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 1 cut(s) 647
MvnI CGCG 1 cut(s) 575
MwoI GCNNNNNNNGC 8 cut(s) 16, 76, 170, 251, 279, 647, 729, 781
NciI CCSGG 3 cut(s) 41, 241, 777
NdeII GATC 4 cut(s) 291, 318, 674, 996
NlaIII CATG 1 cut(s) 883
NlaIV GGNNCC 2 cut(s) 126, 367
NspI RCATGY 1 cut(s) 883
PaeR7I CTCGAG 1 cut(s) 614
PciSI GCTCTTC 1 cut(s) 77
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 705
PflMI CCANNNNNTGG 1 cut(s) 538
PkrI GCNGC 9 cut(s) 18, 46, 61, 144, 310, 453, 628, 700, 731
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
Ppu21I YACGTR 1 cut(s) 633
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 645
PspFI CCCAGC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 645
PspN4I GGNNCC 2 cut(s) 126, 367
PspPI GGNCC 1 cut(s) 124
PspXI VCTCGAGB 1 cut(s) 614
PstI CTGCAG 2 cut(s) 628, 734
PstNI CAGNNNCTG 1 cut(s) 973
PvuII CAGCTG 1 cut(s) 790
RsaI GTAC 2 cut(s) 743, 958
RsaNI GTAC 2 cut(s) 742, 957
SacI GAGCTC 1 cut(s) 300
SapI GCTCTTC 1 cut(s) 77
SatI GCNGC 9 cut(s) 17, 45, 60, 143, 309, 452, 627, 699, 730
Sau3AI GATC 4 cut(s) 291, 318, 674, 996
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 1 cut(s) 426
ScrFI CCNGG 4 cut(s) 41, 241, 647, 777
SduI GDGCHC 2 cut(s) 300, 696
SfaNI GCATC 6 cut(s) 129, 145, 365, 423, 916, 975
SfcI CTRYAG 2 cut(s) 624, 730
Sfr274I CTCGAG 1 cut(s) 614
SinI GGWCC 1 cut(s) 124
SlaI CTCGAG 1 cut(s) 614
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SpeI ACTAGT 1 cut(s) 652
Sse9I AATT 2 cut(s) 228, 663
SsiI CCGC 6 cut(s) 44, 271, 287, 308, 636, 947
SspI AATATT 1 cut(s) 528
SspMI CTAG 1 cut(s) 653
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 4 cut(s) 39, 239, 645, 775
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 1 cut(s) 857
TaiI ACGT 1 cut(s) 635
TasI AATT 2 cut(s) 228, 663
TatI WGTACW 2 cut(s) 741, 956
TauI GCSGC 2 cut(s) 47, 311
TfiI GAWTC 1 cut(s) 705
TseI GCWGC 7 cut(s) 16, 59, 142, 451, 626, 698, 729
TspDTI ATGAA 1 cut(s) 588
TspGWI ACGGA 2 cut(s) 80, 474
Van91I CCANNNNNTGG 1 cut(s) 538
VpaK11BI GGWCC 1 cut(s) 124
XceI RCATGY 1 cut(s) 883
XhoI CTCGAG 1 cut(s) 614
XspI CTAG 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.