Prupe.3G292500_v2.0.a1

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016010
Physical Location & Seq
Reverse (-)
26187663 .. 26189287
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G292500.1

Sequence Viewer

Length: 1023 bp
ATGGAGGAGGAACTGGTGCTGCAAAACCTATTCAATGGCGATCGAGAAACGCAGATTGAGGCCGCCACTGAACTCGGTAAATTGAATAGCAAGCAAAGGCACAAGTTGGCTGAGAGAGGTGTCATGGTTCCATTGATATCAATGCTTCATTCGCCAGATGTTGAAACCATTAAAGCTGCTCTGTTTTCTCTGCTTAGTCTTGCCTTTGGCAGTGAAAGGAACAAGAGCATGATTGTGAAATCTGGGGCTTTACCGGTGTTGCTGAATCTCCTTCGATGCGAAAGCGAGGCACTGATTGAGCTCACAATAGCAGCTTTGTTGATTCTCTCATCTTGCAAGACAAACAAGTCAGCAATTGCCAAATCTGGAGCCATCCAACTCATGGTTGAAATTCTCAACATGAACAACGTGATTATTAGTATGCAAGCCAGACTTGATGCCATAGCCGCACTCCACAACCTCTCAACCTGCCATCAGATTGTACCTTCTTTGGTCTCTTGTGGCGTAATATTTTCCTTGCTGCAAATAATCCAGTACAGCTTGGAAAAACCAGGCCAGCTGGTTGACAAGGCAATTGCACTGCTTGACGACATCATTTTTTCATCGAAGAACGCACTCAAGGAAGCTGCTGCTACGCATGGCGCGATTAGGGCACTGGTTGAGATAATTGAAGAGGGGTCAATGGAGCGCAAGGAGCATGCAGTGAGAATACTCCTACTTATATGCCAGAGCTGCAGAGAAATATACAGAGGATTGATACTCAAGGAAGGAGCAATGCCTGGACTGCTTCAGCTGAGCGTGGACGGAACATGGAGGGCTAAAACTATGGCACGGGAGTTGCTGTTTCTATTGAGAGACTGGTCAGGCTCAGGTTATGGTTCGAGCAACCAGCAGTCGAGGAATAGGGTTATAGAACAGATTATGCAAGAAATTGATGCAGAAGAAGAGAGAGTTGTGGGGACAAGTACAACAGCGTTAAGGCTGGTGGAGGAGATGCTTGCAAAGCTCAGTGGTATACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm KAP

Protein Analysis

341

Amino Acids

37.31

Weight (kDa)

5.96

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016010)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14510
malus_domestica MD09G1024900.v1.1 MD17G1026200.v1.1
prunus_persica Prupe.3G292500_v2.0.a1
pyrus_communis pycom17g02130
rosa_chinensis RchiOBHm_Chr2g0173151
rosa_laevigata RLG00000022164
rosa_multiflora Rmu_sc0020537.1_g000001
rosa_roxburghii Rroxscaffold_2G00079180
rosa_rugosa Rorug02G0565700
rosa_samantha Rh2AG645900 Rh2BG656600 Rh2CG621700 Rh2DG670000
rosa_wichuraiana Rw2G053040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 346
Acc36I ACCTGC 1 cut(s) 476
AccB7I CCANNNNNTGG 1 cut(s) 382
AccI GTMKAC 1 cut(s) 1015
AccII CGCG 1 cut(s) 644
AciI CCGC 2 cut(s) 63, 447
AcsI RAATTY 1 cut(s) 390
AcuI CTGAAG 1 cut(s) 773
AfaI GTAC 3 cut(s) 483, 536, 967
AfiI CCNNNNNNNGG 1 cut(s) 382
AgeI ACCGGT 1 cut(s) 253
AgsI TTSAA 5 cut(s) 34, 85, 164, 389, 671
AjnI CCWGG 2 cut(s) 550, 778
AluBI AGCT 9 cut(s) 176, 301, 314, 540, 559, 626, 732, 793, 1006
AluI AGCT 9 cut(s) 176, 301, 314, 540, 559, 626, 732, 793, 1006
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 2 cut(s) 499, 849
AoxI GGCC 2 cut(s) 60, 553
ApeKI GCWGC 7 cut(s) 19, 176, 311, 520, 626, 629, 732
ApoI RAATTY 1 cut(s) 390
AsiGI ACCGGT 1 cut(s) 253
AspLEI GCGC 2 cut(s) 644, 690
BaeGI GKGCMC 1 cut(s) 655
BanII GRGCYC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 7 cut(s) 6, 163, 323, 507, 613, 616, 719
BccI CCATC 2 cut(s) 380, 480
BciT130I CCWGG 2 cut(s) 552, 780
BcoDI GTCTC 2 cut(s) 499, 849
BfmI CTRYAG 1 cut(s) 733
BfuAI ACCTGC 1 cut(s) 476
BisI GCNGC 9 cut(s) 20, 63, 177, 312, 447, 521, 627, 630, 733
BlpI GCTNAGC 1 cut(s) 794
BlsI GCNGC 9 cut(s) 21, 64, 178, 313, 448, 522, 628, 631, 734
Bme1390I CCNGG 2 cut(s) 552, 780
BmiI GGNNCC 2 cut(s) 129, 370
BmrFI CCNGG 2 cut(s) 552, 780
BmsI GCATC 4 cut(s) 266, 427, 925, 984
BpmI CTGGAG 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 868
Bpu1102I GCTNAGC 1 cut(s) 794
BpuEI CTTGAG 2 cut(s) 602, 746
BsaI GGTCTC 1 cut(s) 499
BsaWI WCCGGW 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 827, 857
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 4 cut(s) 18, 532, 660, 863
Bse3DI GCAATG 1 cut(s) 780
BseBI CCWGG 2 cut(s) 552, 780
BseGI GGATG 1 cut(s) 372
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 4 cut(s) 102, 785, 882, 1021
BseNI ACTGG 4 cut(s) 18, 532, 660, 863
BseRI GAGGAG 2 cut(s) 20, 1004
BseSI GKGCMC 1 cut(s) 655
BseXI GCAGC 7 cut(s) 6, 163, 323, 507, 613, 616, 719
Bsh1236I CGCG 1 cut(s) 644
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 62, 555
BshTI ACCGGT 1 cut(s) 253
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 973
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 2 cut(s) 499, 849
BsmFI GGGAC 1 cut(s) 973
BsnI GGCC 2 cut(s) 62, 555
Bso31I GGTCTC 1 cut(s) 499
Bsp1286I GDGCHC 2 cut(s) 303, 655
Bsp143I GATC 1 cut(s) 40
Bsp1720I GCTNAGC 1 cut(s) 794
BspACI CCGC 2 cut(s) 63, 447
BspANI GGCC 2 cut(s) 62, 555
BspCNI CTCAG 4 cut(s) 103, 786, 881, 1020
BspFNI CGCG 1 cut(s) 644
BspLI GGNNCC 2 cut(s) 129, 370
BspMAI CTGCAG 1 cut(s) 737
BspMI ACCTGC 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 499
BsrDI GCAATG 1 cut(s) 780
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 4 cut(s) 18, 532, 660, 863
BssAI RCCGGY 1 cut(s) 253
BssMI GATC 1 cut(s) 40
BssNAI GTATAC 1 cut(s) 1016
Bst1107I GTATAC 1 cut(s) 1016
Bst2UI CCWGG 2 cut(s) 552, 780
Bst6I CTCTTC 2 cut(s) 666, 939
BstC8I GCNNGC 5 cut(s) 92, 426, 557, 699, 999
BstDEI CTNAG 5 cut(s) 111, 194, 794, 868, 1007
BstF5I GGATG 1 cut(s) 372
BstFNI CGCG 1 cut(s) 644
BstHHI GCGC 2 cut(s) 644, 690
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 2 cut(s) 499, 849
BstMBI GATC 1 cut(s) 40
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 7 cut(s) 151, 446, 650, 694, 732, 784, 1003
BstNI CCWGG 2 cut(s) 552, 780
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 2 cut(s) 550, 778
BstSFI CTRYAG 1 cut(s) 733
BstSLI GKGCMC 1 cut(s) 655
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 7 cut(s) 6, 163, 323, 507, 613, 616, 719
BstZ17I GTATAC 1 cut(s) 1016
BsuRI GGCC 2 cut(s) 62, 555
BtsCI GGATG 1 cut(s) 372
BtsI GCAGTG 3 cut(s) 217, 578, 708
BtsIMutI CAGTG 7 cut(s) 66, 217, 290, 578, 653, 708, 1015
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 5 cut(s) 92, 426, 557, 699, 999
CfoI GCGC 2 cut(s) 644, 690
Cfr10I RCCGGY 1 cut(s) 253
Csp6I GTAC 3 cut(s) 482, 535, 966
CspAI ACCGGT 1 cut(s) 253
CviAII CATG 8 cut(s) 124, 229, 382, 400, 638, 698, 810, 1020
CviQI GTAC 3 cut(s) 482, 535, 966
DdeI CTNAG 5 cut(s) 111, 194, 794, 868, 1007
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
Eam1104I CTCTTC 2 cut(s) 666, 939
EarI CTCTTC 2 cut(s) 666, 939
Ecl136II GAGCTC 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 303
Eco31I GGTCTC 1 cut(s) 499
Eco32I GATATC 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 773
EcoICRI GAGCTC 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 550, 778
EcoRV GATATC 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 303
FaeI CATG 8 cut(s) 127, 232, 385, 403, 641, 701, 813, 1023
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 1 cut(s) 973
FatI CATG 8 cut(s) 123, 228, 381, 399, 637, 697, 809, 1019
FblI GTMKAC 1 cut(s) 1015
Fnu4HI GCNGC 9 cut(s) 20, 63, 177, 312, 447, 521, 627, 630, 733
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 9 cut(s) 20, 63, 177, 312, 447, 521, 627, 630, 733
GlaI GCGC 2 cut(s) 643, 689
GluI GCNGC 9 cut(s) 20, 63, 177, 312, 447, 521, 627, 630, 733
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 2 cut(s) 62, 555
HapII CCGG 1 cut(s) 254
HhaI GCGC 2 cut(s) 644, 690
Hin1II CATG 8 cut(s) 127, 232, 385, 403, 641, 701, 813, 1023
Hin6I GCGC 2 cut(s) 642, 688
HinP1I GCGC 2 cut(s) 642, 688
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 2 cut(s) 265, 322
HpaII CCGG 1 cut(s) 254
Hpy166II GTNNAC 3 cut(s) 565, 802, 1016
Hpy188I TCNGA 1 cut(s) 477
Hpy188III TCNNGA 2 cut(s) 44, 366
Hpy8I GTNNAC 3 cut(s) 565, 802, 1016
HpyAV CCTTC 3 cut(s) 281, 495, 761
HpyCH4IV ACGT 1 cut(s) 408
HpyF10VI GCNNNNNNNGC 7 cut(s) 151, 446, 650, 694, 732, 784, 1003
HpyF3I CTNAG 5 cut(s) 111, 194, 794, 868, 1007
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 8 cut(s) 127, 232, 385, 403, 641, 701, 813, 1023
HspAI GCGC 2 cut(s) 642, 688
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 4 cut(s) 368, 685, 694, 770
Lsp1109I GCAGC 7 cut(s) 6, 163, 323, 507, 613, 616, 719
LweI GCATC 4 cut(s) 266, 427, 925, 984
MaeII ACGT 1 cut(s) 408
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 4 cut(s) 619, 683, 953, 956
MfeI CAATTG 2 cut(s) 354, 573
MhlI GDGCHC 2 cut(s) 303, 655
MluCI AATT 6 cut(s) 80, 354, 390, 573, 666, 930
MmeI TCCRAC 1 cut(s) 400
MnlI CCTC 9 cut(s) 52, 110, 280, 470, 667, 743, 807, 891, 982
MseI TTAA 2 cut(s) 171, 977
MslI CAYNNNNRTG 1 cut(s) 233
MspA1I CMGCKG 2 cut(s) 559, 793
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 552, 780
MunI CAATTG 2 cut(s) 354, 573
MvaI CCWGG 2 cut(s) 552, 780
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 7 cut(s) 151, 446, 650, 694, 732, 784, 1003
NdeII GATC 1 cut(s) 40
NlaIII CATG 8 cut(s) 127, 232, 385, 403, 641, 701, 813, 1023
NlaIV GGNNCC 2 cut(s) 129, 370
NspI RCATGY 1 cut(s) 701
PaeI GCATGC 1 cut(s) 701
PcsI WCGNNNNNNNCGW 1 cut(s) 641
PfeI GAWTC 2 cut(s) 265, 322
PflMI CCANNNNNTGG 1 cut(s) 382
PinAI ACCGGT 1 cut(s) 253
PkrI GCNGC 9 cut(s) 21, 64, 178, 313, 448, 522, 628, 631, 734
Ple19I CGATCG 1 cut(s) 43
Psp124BI GAGCTC 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 550, 778
PspGI CCWGG 2 cut(s) 550, 778
PspN4I GGNNCC 2 cut(s) 129, 370
PstI CTGCAG 1 cut(s) 737
PvuI CGATCG 1 cut(s) 43
PvuII CAGCTG 2 cut(s) 559, 793
RsaI GTAC 3 cut(s) 483, 536, 967
RsaNI GTAC 3 cut(s) 482, 535, 966
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 2 cut(s) 171, 977
SatI GCNGC 9 cut(s) 20, 63, 177, 312, 447, 521, 627, 630, 733
Sau3AI GATC 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 552, 780
SduI GDGCHC 2 cut(s) 303, 655
SfaNI GCATC 4 cut(s) 266, 427, 925, 984
SfcI CTRYAG 1 cut(s) 733
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 2 cut(s) 617, 761
SmoI CTYRAG 2 cut(s) 617, 761
SphI GCATGC 1 cut(s) 701
Sse9I AATT 6 cut(s) 80, 354, 390, 573, 666, 930
SsiI CCGC 2 cut(s) 63, 447
SspI AATATT 1 cut(s) 510
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 550, 778
TaiI ACGT 1 cut(s) 411
TaqI TCGA 5 cut(s) 43, 274, 605, 881, 896
TasI AATT 6 cut(s) 80, 354, 390, 573, 666, 930
TatI WGTACW 2 cut(s) 534, 965
TauI GCSGC 2 cut(s) 65, 449
TfiI GAWTC 2 cut(s) 265, 322
Tru1I TTAA 2 cut(s) 171, 977
Tru9I TTAA 2 cut(s) 171, 977
TscAI CASTG 7 cut(s) 73, 217, 297, 585, 660, 708, 1015
TseI GCWGC 7 cut(s) 19, 176, 311, 520, 626, 629, 732
TspDTI ATGAA 3 cut(s) 137, 416, 591
TspGWI ACGGA 1 cut(s) 819
TspRI CASTG 7 cut(s) 73, 217, 297, 585, 660, 708, 1015
Van91I CCANNNNNTGG 1 cut(s) 382
XapI RAATTY 1 cut(s) 390
XceI RCATGY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XmiI GTMKAC 1 cut(s) 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.