Rorug02G0565700

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005312
Physical Location & Seq
Reverse (-)
69056155 .. 69057775
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0565700.1

Sequence Viewer

Length: 1062 bp
ATGGATAAATTAACAGAGAGAGAGATACGCGAGGCATCGATTGAGAATCTACAAGTGAAATTGAGGAACATGGCAAGTGTGCTGGTGGGATGGGGCGGTGTTGCGGAAAAAGGGTGGAGGAAAGGTCCTTGGACTCATGAAGAGGATAAGCTGCTCAGTGAGCATGTCAATTTGCATGGAGAGGGAAGATGGAGTTCGGTTGCTAGGTGCACAGGGTTGAACAGGAGTGGGAAAAGTTGCAGACTTAGATGGGTGAATTATCTTAGGCCTGGACTGAAGAGAGGCCAGTTAACACCTCAGGAGGAAGGCATTATTATTGAATTGCATGCTTTATGGGGTAACAAGTGGTCTACAATTGCTAGATACTTGCCTGGGAGAACAGACAATGAGATAAAGAATTACTGGAGAACTCATTTCAAAAAGAAAGAGAAGTGCACCGAGAAGCAGCAAAAACGAAAAGCTCAAATCCTCAAAGAGAAGCAACAAGAAGAAGAAGAAGATATAAAGGATGATCAAGAAAACAAGAAAATAAAATCAGCCAGTACTAGTACTGCACCACAGGGACATAGTGAAGCCTTGGCCTGCAGCAGCGAATTACGAAATAATAATATGATCACTGATGAGCTGCAGCAGCTGGCACAGCCAACTCAAGAGATGAATGTTGTTTTTACATGCCCGAATATGGAGGAGGTTCAATGCTTACCTGCACTAGTGTCGATGAACCAATTAGGCGGTACTACTAGTGCTGTTGAATCTACTATATGGTCATCGGAAAACACTACCATGATTAACATTGAATCAGAAGACGATCAAGGGTTTTGGGGACAACTCTGGAACCTAGACGATGATCATGGTCATGTACAAGCTAACTGCGTGGGACATCACACCAGTTATAGCAATAGTGAGTGCCGGAACAGTTTAGCCTTGCAGCAGAATCAAGCAATTACAGCTACATCTTCTGGAGCCATACACAATGAAGCTACTAGGGCTAACAATTTTTCCTGGGGAGAGGATATTCGTTCCTATAAGTACTTCTATAGCGGATCAGGCTACACATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm KAP

Protein Analysis

353

Amino Acids

40.17

Weight (kDa)

6.16

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 41 - 88 1.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 44 - 102 2.6e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 94 - 138 4.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 98 - 149 1.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 712
AccI GTMKAC 1 cut(s) 350
AccII CGCG 1 cut(s) 30
AciI CCGC 4 cut(s) 96, 104, 732, 1041
AclWI GGATC 1 cut(s) 1051
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 5 cut(s) 544, 550, 736, 861, 1031
AfiI CCNNNNNNNGG 1 cut(s) 682
AgsI TTSAA 6 cut(s) 220, 320, 418, 695, 752, 797
AhlI ACTAGT 3 cut(s) 545, 709, 740
AjnI CCWGG 3 cut(s) 268, 370, 1001
AluBI AGCT 7 cut(s) 151, 461, 625, 634, 866, 950, 980
AluI AGCT 7 cut(s) 151, 461, 625, 634, 866, 950, 980
Alw21I GWGCWC 2 cut(s) 212, 437
Alw44I GTGCAC 2 cut(s) 208, 433
AlwI GGATC 1 cut(s) 1051
AlwNI CAGNNNCTG 1 cut(s) 634
AoxI GGCC 3 cut(s) 266, 283, 579
ApaLI GTGCAC 2 cut(s) 208, 433
ApeKI GCWGC 8 cut(s) 151, 445, 585, 588, 625, 628, 631, 928
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 297
BaeGI GKGCMC 2 cut(s) 212, 437
BbsI GAAGAC 1 cut(s) 810
Bbv12I GWGCWC 2 cut(s) 212, 437
BbvI GCAGC 8 cut(s) 138, 457, 597, 600, 612, 640, 643, 940
BccI CCATC 3 cut(s) 84, 183, 243
BcgI CGANNNNNNTGC 2 cut(s) 696, 730
BciT130I CCWGG 3 cut(s) 270, 372, 1003
BclI TGATCA 3 cut(s) 511, 612, 847
BcuI ACTAGT 3 cut(s) 545, 709, 740
BfaI CTAG 7 cut(s) 204, 360, 546, 710, 741, 839, 984
BfmI CTRYAG 3 cut(s) 583, 626, 1036
BfuAI ACCTGC 1 cut(s) 712
BisI GCNGC 8 cut(s) 152, 446, 586, 589, 626, 629, 632, 929
BlsI GCNGC 8 cut(s) 153, 447, 587, 590, 627, 630, 633, 930
BmcAI AGTACT 3 cut(s) 544, 550, 1031
Bme1390I CCNGG 3 cut(s) 270, 372, 1003
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 836, 964
BmrFI CCNGG 3 cut(s) 270, 372, 1003
BmsI GCATC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 810
BpmI CTGGAG 2 cut(s) 424, 981
BpuEI CTTGAG 1 cut(s) 633
Bsa29I ATCGAT 1 cut(s) 38
BsaJI CCNNGG 4 cut(s) 128, 371, 576, 1002
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 682
Bse1I ACTGG 4 cut(s) 286, 407, 540, 888
Bse21I CCTNAGG 1 cut(s) 297
BseBI CCWGG 3 cut(s) 270, 372, 1003
BseCI ATCGAT 1 cut(s) 38
BseDI CCNNGG 4 cut(s) 128, 371, 576, 1002
BseGI GGATG 2 cut(s) 95, 514
BseLI CCNNNNNNNGG 1 cut(s) 682
BseMII CTCAG 2 cut(s) 169, 311
BseNI ACTGG 4 cut(s) 286, 407, 540, 888
BseRI GAGGAG 1 cut(s) 701
BseSI GKGCMC 2 cut(s) 212, 437
BseXI GCAGC 8 cut(s) 138, 457, 597, 600, 612, 640, 643, 940
BsgI GTGCAG 2 cut(s) 537, 690
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 3 cut(s) 268, 285, 581
BshVI ATCGAT 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 212, 437
BsiSI CCGG 1 cut(s) 910
BslFI GGGAC 3 cut(s) 576, 837, 891
BslI CCNNNNNNNGG 1 cut(s) 682
BsmFI GGGAC 3 cut(s) 576, 837, 891
BsnI GGCC 3 cut(s) 268, 285, 581
Bsp1286I GDGCHC 2 cut(s) 212, 437
Bsp1407I TGTACA 1 cut(s) 859
Bsp143I GATC 5 cut(s) 511, 612, 808, 847, 1043
BspACI CCGC 4 cut(s) 96, 104, 732, 1041
BspANI GGCC 3 cut(s) 268, 285, 581
BspCNI CTCAG 2 cut(s) 168, 310
BspDI ATCGAT 1 cut(s) 38
BspFNI CGCG 1 cut(s) 30
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 836, 964
BspMAI CTGCAG 2 cut(s) 587, 630
BspMI ACCTGC 1 cut(s) 712
BspPI GGATC 1 cut(s) 1051
BsrGI TGTACA 1 cut(s) 859
BsrI ACTGG 4 cut(s) 286, 407, 540, 888
BssECI CCNNGG 4 cut(s) 128, 371, 576, 1002
BssMI GATC 5 cut(s) 511, 612, 808, 847, 1043
BssT1I CCWWGG 2 cut(s) 128, 576
Bst2UI CCWGG 3 cut(s) 270, 372, 1003
Bst4CI ACNGT 1 cut(s) 917
Bst6I CTCTTC 2 cut(s) 135, 272
BstAUI TGTACA 1 cut(s) 859
BstC8I GCNNGC 3 cut(s) 327, 583, 636
BstDEI CTNAG 4 cut(s) 155, 245, 263, 297
BstF5I GGATG 2 cut(s) 95, 514
BstFNI CGCG 1 cut(s) 30
BstKTI GATC 5 cut(s) 514, 615, 811, 850, 1046
BstMBI GATC 5 cut(s) 511, 612, 808, 847, 1043
BstMWI GCNNNNNNNGC 6 cut(s) 160, 631, 640, 947, 986, 1047
BstNI CCWGG 3 cut(s) 270, 372, 1003
BstNSI RCATGY 3 cut(s) 167, 329, 675
BstSCI CCNGG 3 cut(s) 268, 370, 1001
BstSFI CTRYAG 3 cut(s) 583, 626, 1036
BstSLI GKGCMC 2 cut(s) 212, 437
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 8 cut(s) 138, 457, 597, 600, 612, 640, 643, 940
BstV2I GAAGAC 1 cut(s) 810
Bsu15I ATCGAT 1 cut(s) 38
Bsu36I CCTNAGG 1 cut(s) 297
BsuRI GGCC 3 cut(s) 268, 285, 581
BsuTUI ATCGAT 1 cut(s) 38
BtsCI GGATG 2 cut(s) 95, 514
BtsIMutI CAGTG 2 cut(s) 163, 615
BveI ACCTGC 1 cut(s) 712
Cac8I GCNNGC 3 cut(s) 327, 583, 636
CaiI CAGNNNCTG 1 cut(s) 634
CciI TCATGA 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 125
ClaI ATCGAT 1 cut(s) 38
Csp6I GTAC 5 cut(s) 543, 549, 735, 860, 1030
CviAII CATG 9 cut(s) 70, 137, 164, 176, 326, 672, 784, 851, 857
CviQI GTAC 5 cut(s) 543, 549, 735, 860, 1030
DdeI CTNAG 4 cut(s) 155, 245, 263, 297
DpnI GATC 5 cut(s) 513, 614, 810, 849, 1045
DpnII GATC 5 cut(s) 511, 612, 808, 847, 1043
Eam1104I CTCTTC 2 cut(s) 135, 272
EarI CTCTTC 2 cut(s) 135, 272
Eco130I CCWWGG 2 cut(s) 128, 576
Eco147I AGGCCT 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 296
Eco81I CCTNAGG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 3 cut(s) 268, 370, 1001
EcoT14I CCWWGG 2 cut(s) 128, 576
ErhI CCWWGG 2 cut(s) 128, 576
FaeI CATG 9 cut(s) 73, 140, 167, 179, 329, 675, 787, 854, 860
FaqI GGGAC 3 cut(s) 576, 837, 891
FatI CATG 9 cut(s) 69, 136, 163, 175, 325, 671, 783, 850, 856
FbaI TGATCA 3 cut(s) 511, 612, 847
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 8 cut(s) 152, 446, 586, 589, 626, 629, 632, 929
FokI GGATG 2 cut(s) 102, 521
Fsp4HI GCNGC 8 cut(s) 152, 446, 586, 589, 626, 629, 632, 929
FspBI CTAG 7 cut(s) 204, 360, 546, 710, 741, 839, 984
GluI GCNGC 8 cut(s) 152, 446, 586, 589, 626, 629, 632, 929
GsuI CTGGAG 2 cut(s) 424, 981
HaeIII GGCC 3 cut(s) 268, 285, 581
HapII CCGG 1 cut(s) 910
Hin1II CATG 9 cut(s) 73, 140, 167, 179, 329, 675, 787, 854, 860
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HinfI GANTC 5 cut(s) 46, 133, 752, 797, 934
HpaI GTTAAC 1 cut(s) 291
HpaII CCGG 1 cut(s) 910
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 4 cut(s) 210, 291, 351, 435
Hpy188I TCNGA 2 cut(s) 772, 802
Hpy188III TCNNGA 6 cut(s) 137, 299, 515, 650, 832, 960
Hpy8I GTNNAC 4 cut(s) 210, 291, 351, 435
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 917
HpyF10VI GCNNNNNNNGC 6 cut(s) 160, 631, 640, 947, 986, 1047
HpyF3I CTNAG 4 cut(s) 155, 245, 263, 297
Hsp92II CATG 9 cut(s) 73, 140, 167, 179, 329, 675, 787, 854, 860
Ksp22I TGATCA 3 cut(s) 511, 612, 847
KspAI GTTAAC 1 cut(s) 291
Kzo9I GATC 5 cut(s) 511, 612, 808, 847, 1043
LmnI GCTCC 1 cut(s) 962
Lsp1109I GCAGC 8 cut(s) 138, 457, 597, 600, 612, 640, 643, 940
LweI GCATC 1 cut(s) 44
MaeI CTAG 7 cut(s) 204, 360, 546, 710, 741, 839, 984
MaeIII GTNAC 1 cut(s) 338
MalI GATC 5 cut(s) 513, 614, 810, 849, 1045
MboI GATC 5 cut(s) 511, 612, 808, 847, 1043
MboII GAAGA 9 cut(s) 152, 198, 289, 500, 503, 506, 509, 815, 948
MfeI CAATTG 1 cut(s) 354
MhlI GDGCHC 2 cut(s) 212, 437
MlyI GAGTC 1 cut(s) 127
MseI TTAA 3 cut(s) 11, 290, 789
MslI CAYNNNNRTG 2 cut(s) 782, 855
MspA1I CMGCKG 1 cut(s) 634
MspI CCGG 1 cut(s) 910
MspR9I CCNGG 3 cut(s) 270, 372, 1003
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 3 cut(s) 270, 372, 1003
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 6 cut(s) 160, 631, 640, 947, 986, 1047
NdeII GATC 5 cut(s) 511, 612, 808, 847, 1043
NlaIII CATG 9 cut(s) 73, 140, 167, 179, 329, 675, 787, 854, 860
NlaIV GGNNCC 2 cut(s) 836, 964
NspI RCATGY 3 cut(s) 167, 329, 675
PaeI GCATGC 1 cut(s) 329
PagI TCATGA 1 cut(s) 136
PceI AGGCCT 1 cut(s) 268
PfeI GAWTC 4 cut(s) 46, 752, 797, 934
PkrI GCNGC 8 cut(s) 153, 447, 587, 590, 627, 630, 633, 930
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 3 cut(s) 268, 370, 1001
PspGI CCWGG 3 cut(s) 268, 370, 1001
PspN4I GGNNCC 2 cut(s) 836, 964
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
PstI CTGCAG 2 cut(s) 587, 630
PstNI CAGNNNCTG 1 cut(s) 634
PvuII CAGCTG 1 cut(s) 634
RsaI GTAC 5 cut(s) 544, 550, 736, 861, 1031
RsaNI GTAC 5 cut(s) 543, 549, 735, 860, 1030
RseI CAYNNNNRTG 2 cut(s) 782, 855
SaqAI TTAA 3 cut(s) 11, 290, 789
SatI GCNGC 8 cut(s) 152, 446, 586, 589, 626, 629, 632, 929
Sau3AI GATC 5 cut(s) 511, 612, 808, 847, 1043
Sau96I GGNCC 1 cut(s) 125
ScaI AGTACT 3 cut(s) 544, 550, 1031
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 3 cut(s) 270, 372, 1003
SduI GDGCHC 2 cut(s) 212, 437
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 3 cut(s) 583, 626, 1036
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 2 cut(s) 782, 855
SmlI CTYRAG 1 cut(s) 648
SmoI CTYRAG 1 cut(s) 648
SpeI ACTAGT 3 cut(s) 545, 709, 740
SphI GCATGC 1 cut(s) 329
SseBI AGGCCT 1 cut(s) 268
SsiI CCGC 4 cut(s) 96, 104, 732, 1041
SspMI CTAG 7 cut(s) 204, 360, 546, 710, 741, 839, 984
StuI AGGCCT 1 cut(s) 268
StyD4I CCNGG 3 cut(s) 268, 370, 1001
StyI CCWWGG 2 cut(s) 128, 576
TaaI ACNGT 1 cut(s) 917
TaqI TCGA 2 cut(s) 38, 716
TatI WGTACW 4 cut(s) 542, 548, 859, 1029
TfiI GAWTC 4 cut(s) 46, 752, 797, 934
Tru1I TTAA 3 cut(s) 11, 290, 789
Tru9I TTAA 3 cut(s) 11, 290, 789
TscAI CASTG 2 cut(s) 163, 622
TseI GCWGC 8 cut(s) 151, 445, 585, 588, 625, 628, 631, 928
TspDTI ATGAA 4 cut(s) 153, 671, 734, 990
TspRI CASTG 2 cut(s) 163, 622
VneI GTGCAC 2 cut(s) 208, 433
VpaK11BI GGWCC 1 cut(s) 125
XceI RCATGY 3 cut(s) 167, 329, 675
XmiI GTMKAC 1 cut(s) 350
XspI CTAG 7 cut(s) 204, 360, 546, 710, 741, 839, 984
ZrmI AGTACT 3 cut(s) 544, 550, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.