Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005312

Physical Location & Seq

Genomic Coordinates Forward (+)

19809472 .. 19811065

Gene Structure 1594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCATTGGTCGTGCATCAAATGCAGGGTACTTATGTTACGTATCCCTCGAGGCCCTTGTCATGGAGCAAAGGGATGAAGTTGAAGCAGTGTGTAACAACACATCAAATGGTGAGGACAGAGAGGTGCTTTATATTGAAGCGCAACCTTTGTTTGAGTGTAGGGGCTTCTCTCATGCGGGGACCAAAAGTTAAACCTTTCAGAGTTTCCGCCTTCAAGGGCAGTGCCCAGAATGGTAAATCTTCAGGTAGAACAAGTGGATCAAAGCTTCCCAAGAATTCAGTCAAACTGAAAGAGAATGAGGATACCATTACGAAATCTCAGGCAAATGATATTCCTCTTTCTTACGCCTCTGAAGCAAATGAAAGCATTGCATCGTCCCCCATCATTCATAATTTATTTAAGAAATGGCTGAGAATGCTTCGAACACCATCATCAAGTGAAGTAGAAGATGGGCTTTTGGGGGAAGAACCGCCTTCAATGAAGGCATCAGAAACTAAGCATGAGGTTCAAAACAAGGAAAAGGATGGGATTCTACGGACGTTTTGGTGCAATTTTCTCAGTCTAAATGCTACAATAAAGATACCCTTACTTATATTCATACCCATGTACCTGGCAGTTAATACAATTTATGGGGCCGAAGTTTCAAAGGAGTTGACGCCTTTGTGGGTTTTAGGACCCTTCATTGTAGCTCTCTACATCAAGATGCTTCAGTGGTTGTGTGCACTCTATGTTTTCAGCTTCAAGCAGACTGTTAAAGTAATCAAGAATTTACCCTCCTACTACATGGTGGCCTATACAAACGTTGCACATGGGAAGCTTAAAGAGGAAATACGGACTCGTTTCTGGCAACCTTTACTGAACATTAAGAATTTAGACTACAAGAAATTATCAAGAAGAAAGCTGAAAGCACTGCAAGAGTTGATAGTCGAGAGATACCTTGATTTTGTGGAATCAATATGGCCTTATTACTGCAGAACAATCAGATTCCTAAAGAGGGCTAATCTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

38.71

Weight (kDa)

9.85

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63050 AT5G63050
fragaria_vesca	FvH4_5g05630
malus_domestica	MD06G1170900.v1.1 MD14G1176600.v1.1
prunus_persica	Prupe.5G170500_v2.0.a1 Prupe.5G170500_v2.0.a1
pyrus_communis	pycom06g15240 pycom14g14750
rosa_chinensis	RchiOBHm_Chr7g0193181
rosa_laevigata	RLG00000004289 RLG00000022163 RLG00000026387
rosa_multiflora	Rmu_ssc0000092.1_g000029
rosa_roxburghii	Rroxscaffold_2G00079190 Rroxscaffold_3G00262310 Rroxscaffold_6G00395460
rosa_rugosa	Rorug02G0253700 Rorug02G0565700 Rorug07G0008100
rosa_samantha	Rh2AG645800 Rh2BG656500 Rh2CG621600 Rh2DG669900 Rh7AG133500 Rh7BG134500 Rh7CG137400 Rh7DG135500
rosa_wichuraiana	Rw7G011410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	49
AciI	CCGC	3 cut(s)	178, 210, 473
AclI	AACGTT	1 cut(s)	804
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	3 cut(s)	277, 769, 871
AcuI	CTGAAG	3 cut(s)	228, 375, 695
AcyI	GRCGYC	1 cut(s)	659
AfaI	GTAC	2 cut(s)	31, 611
AfiI	CCNNNNNNNGG	2 cut(s)	63, 997
AgsI	TTSAA	7 cut(s)	85, 139, 217, 480, 512, 648, 745
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	5 cut(s)	268, 692, 741, 820, 904
AluI	AGCT	5 cut(s)	268, 692, 741, 820, 904
Alw21I	GWGCWC	1 cut(s)	727
Alw44I	GTGCAC	1 cut(s)	723
AlwI	GGATC	1 cut(s)	268
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	4 cut(s)	53, 636, 792, 962
ApaLI	GTGCAC	1 cut(s)	723
ApoI	RAATTY	3 cut(s)	277, 769, 871
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	4 cut(s)	54, 182, 636, 677
AsuHPI	GGTGA	1 cut(s)	124
AsuII	TTCGAA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	182, 677
BaeGI	GKGCMC	2 cut(s)	229, 727
BaeI	ACNNNNGTAYC	4 cut(s)	21, 54, 593, 626
Bbv12I	GWGCWC	1 cut(s)	727
BccI	CCATC	4 cut(s)	392, 439, 446, 521
BciT130I	CCWGG	1 cut(s)	614
BciVI	GTATCC	2 cut(s)	54, 298
BfmI	CTRYAG	1 cut(s)	973
BfuI	GTATCC	2 cut(s)	54, 298
Bme1390I	CCNGG	1 cut(s)	614
Bme18I	GGWCC	2 cut(s)	182, 677
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	4 cut(s)	54, 182, 636, 677
BmiI	GGNNCC	3 cut(s)	183, 637, 679
BmrFI	CCNGG	1 cut(s)	614
BmsI	GCATC	4 cut(s)	25, 383, 497, 696
Bpu14I	TTCGAA	1 cut(s)	424
BsaAI	YACGTR	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	659
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 997
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	614
BseGI	GGATG	2 cut(s)	81, 532
BseLI	CCNNNNNNNGG	2 cut(s)	63, 997
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	3 cut(s)	335, 404, 574
BseSI	GKGCMC	2 cut(s)	229, 727
BshFI	GGCC	4 cut(s)	55, 638, 794, 964
BsiHKAI	GWGCWC	1 cut(s)	727
BsiHKCI	CYCGRG	1 cut(s)	49
BslFI	GGGAC	2 cut(s)	195, 364
BslI	CCNNNNNNNGG	2 cut(s)	63, 997
BsmFI	GGGAC	2 cut(s)	195, 364
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	4 cut(s)	55, 638, 794, 964
BsoBI	CYCGRG	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	424
Bsp1286I	GDGCHC	2 cut(s)	229, 727
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	3 cut(s)	178, 210, 473
BspANI	GGCC	4 cut(s)	55, 638, 794, 964
BspCNI	CTCAG	3 cut(s)	334, 405, 573
BspLI	GGNNCC	3 cut(s)	183, 637, 679
BspMAI	CTGCAG	1 cut(s)	977
BspPI	GGATC	1 cut(s)	268
BspT104I	TTCGAA	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	369
BssMI	GATC	1 cut(s)	260
BssNI	GRCGYC	1 cut(s)	659
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	1 cut(s)	754
BstACI	GRCGYC	1 cut(s)	659
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	424
BstDEI	CTNAG	4 cut(s)	321, 413, 498, 560
BstF5I	GGATG	2 cut(s)	81, 532
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	1 cut(s)	263
BstMBI	GATC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 356, 418
BstNI	CCWGG	1 cut(s)	614
BstSCI	CCNGG	1 cut(s)	612
BstSFI	CTRYAG	1 cut(s)	973
BstSLI	GKGCMC	2 cut(s)	229, 727
BstSNI	TACGTA	1 cut(s)	42
BstXI	CCANNNNNNTGG	1 cut(s)	613
BsuI	GTATCC	2 cut(s)	54, 298
BsuRI	GGCC	4 cut(s)	55, 638, 794, 964
BtsCI	GGATG	2 cut(s)	81, 532
BtsI	GCAGTG	3 cut(s)	95, 229, 911
BtsIMutI	CAGTG	4 cut(s)	95, 229, 719, 911
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	4 cut(s)	54, 182, 636, 677
CseI	GACGC	1 cut(s)	667
Csp6I	GTAC	2 cut(s)	30, 610
CviAII	CATG	6 cut(s)	63, 175, 503, 607, 787, 812
CviQI	GTAC	2 cut(s)	30, 610
DdeI	CTNAG	4 cut(s)	321, 413, 498, 560
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	199
Eco105I	TACGTA	1 cut(s)	42
Eco47I	GGWCC	2 cut(s)	182, 677
Eco57I	CTGAAG	3 cut(s)	228, 375, 695
Eco88I	CYCGRG	1 cut(s)	49
EcoO109I	RGGNCCY	2 cut(s)	54, 677
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	612
FaeI	CATG	6 cut(s)	66, 178, 506, 610, 790, 815
FalI	AAGNNNNNCTT	4 cut(s)	441, 473, 572, 604
FaqI	GGGAC	2 cut(s)	195, 364
FatI	CATG	6 cut(s)	62, 174, 502, 606, 786, 811
FauI	CCCGC	1 cut(s)	171
FokI	GGATG	2 cut(s)	88, 539
GlaI	GCGC	1 cut(s)	143
HaeIII	GGCC	4 cut(s)	55, 638, 794, 964
HgaI	GACGC	1 cut(s)	667
HhaI	GCGC	1 cut(s)	144
Hin1I	GRCGYC	1 cut(s)	659
Hin1II	CATG	6 cut(s)	66, 178, 506, 610, 790, 815
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HindIII	AAGCTT	2 cut(s)	266, 818
HinfI	GANTC	4 cut(s)	532, 838, 953, 987
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	657, 725
Hpy188I	TCNGA	4 cut(s)	203, 355, 493, 986
Hpy188III	TCNNGA	4 cut(s)	703, 766, 894, 931
Hpy8I	GTNNAC	2 cut(s)	657, 725
HpyAV	CCTTC	4 cut(s)	223, 478, 486, 691
HpyCH4III	ACNGT	1 cut(s)	754
HpyCH4IV	ACGT	3 cut(s)	41, 542, 804
HpyCH4V	TGCA	8 cut(s)	16, 25, 374, 552, 725, 809, 916, 975
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 356, 418
HpyF3I	CTNAG	4 cut(s)	321, 413, 498, 560
HpySE526I	ACGT	3 cut(s)	41, 542, 804
Hsp92I	GRCGYC	1 cut(s)	659
Hsp92II	CATG	6 cut(s)	66, 178, 506, 610, 790, 815
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	260
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	7 cut(s)	11, 231, 242, 308, 599, 626, 832
LweI	GCATC	4 cut(s)	25, 383, 497, 696
MaeII	ACGT	3 cut(s)	41, 542, 804
MaeIII	GTNAC	2 cut(s)	37, 94
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	4 cut(s)	234, 461, 479, 909
MhlI	GDGCHC	2 cut(s)	229, 727
MluCI	AATT	7 cut(s)	277, 394, 553, 627, 769, 871, 887
MlyI	GAGTC	1 cut(s)	832
MseI	TTAA	6 cut(s)	192, 402, 621, 756, 822, 867
MslI	CAYNNNNRTG	2 cut(s)	605, 704
MspR9I	CCNGG	1 cut(s)	614
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	3 cut(s)	22, 356, 418
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	6 cut(s)	66, 178, 506, 610, 790, 815
NlaIV	GGNNCC	3 cut(s)	183, 637, 679
NspV	TTCGAA	1 cut(s)	424
PaeR7I	CTCGAG	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PctI	GAATGC	1 cut(s)	423
PfeI	GAWTC	3 cut(s)	532, 953, 987
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
Ppu21I	YACGTR	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	677
Psp1406I	AACGTT	1 cut(s)	804
Psp5II	RGGWCCY	1 cut(s)	677
Psp6I	CCWGG	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	3 cut(s)	183, 637, 679
PspPI	GGNCC	4 cut(s)	54, 182, 636, 677
PspPPI	RGGWCCY	1 cut(s)	677
PspXI	VCTCGAGB	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	977
RsaI	GTAC	2 cut(s)	31, 611
RsaNI	GTAC	2 cut(s)	30, 610
RseI	CAYNNNNRTG	2 cut(s)	605, 704
SaqAI	TTAA	6 cut(s)	192, 402, 621, 756, 822, 867
Sau3AI	GATC	1 cut(s)	260
Sau96I	GGNCC	4 cut(s)	54, 182, 636, 677
SchI	GAGTC	1 cut(s)	832
ScrFI	CCNGG	1 cut(s)	614
SduI	GDGCHC	2 cut(s)	229, 727
SfaNI	GCATC	4 cut(s)	25, 383, 497, 696
SfcI	CTRYAG	1 cut(s)	973
Sfr274I	CTCGAG	1 cut(s)	49
SfuI	TTCGAA	1 cut(s)	424
SinI	GGWCC	2 cut(s)	182, 677
SlaI	CTCGAG	1 cut(s)	49
SmiMI	CAYNNNNRTG	2 cut(s)	605, 704
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
SnaBI	TACGTA	1 cut(s)	42
Sse9I	AATT	7 cut(s)	277, 394, 553, 627, 769, 871, 887
SsiI	CCGC	3 cut(s)	178, 210, 473
StyD4I	CCNGG	1 cut(s)	612
TaaI	ACNGT	1 cut(s)	754
TaiI	ACGT	3 cut(s)	44, 545, 807
TaqI	TCGA	3 cut(s)	50, 424, 930
TasI	AATT	7 cut(s)	277, 394, 553, 627, 769, 871, 887
TfiI	GAWTC	3 cut(s)	532, 953, 987
Tru1I	TTAA	6 cut(s)	192, 402, 621, 756, 822, 867
Tru9I	TTAA	6 cut(s)	192, 402, 621, 756, 822, 867
TscAI	CASTG	4 cut(s)	95, 229, 719, 918
TspDTI	ATGAA	6 cut(s)	92, 378, 380, 497, 589, 673
TspGWI	ACGGA	2 cut(s)	553, 850
TspRI	CASTG	4 cut(s)	95, 229, 719, 918
VneI	GTGCAC	1 cut(s)	723
VpaK11BI	GGWCC	2 cut(s)	182, 677
XapI	RAATTY	3 cut(s)	277, 769, 871
XhoI	CTCGAG	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.